Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1050 ATGAATTTTTCCTGCAACAAACACCATTATTCAATCCCATTATTTCTCATGCTCTCGTTATGTTTGTTAAATCAATCCATGTCTGATCCAAGAGCCACAGAAGCAGCTCTTGTTTGTACAAACAACAGTGCTTCCGCAGCCGAAAGATCAACTTTTGTTTCCAATTTCTTAGATTCCATGGATGCTGTAACCCCTCTTATTGCATCACAAAGATATGCTGCTATTGTTAATGGAACTGGGAATTCTTCAGTTTATGCTTTTGGTGAGTGTATGAATGATCTTTCTCAATCAGATTGTGATCTTTGTTTTGCCCAGATGAAAACTCAGATTCTTAGATGCCTTCCTTTTCAGCTTGCTACTCGTGGGGGGAGGTTGTTTTTTGATGGATGTTATATTAGATATGATTCTTATGATTTTTTCAATGAATCTTTGAGTATATTGGATAGAACTGTTTGTGGAAAGTCGAATTTTAGTGGGGATCATTCGGTTTTTAGAGCGAATGCGGTGAAATTGGTGAGGAATTTGAGTGTAGAAGCACCAAAGAACAGTGGATTTGCTGTTGGTTTGGTGAATTTTCGGAACACTTCGGTTTACGGATTGGCTCAATGTTGGAAATTTGTGAGAGGGGGTTCTTGTTCTAGGTGTTTGGTTGATGCAGCTAATGAAATTGGGTCTTGTCCTCCTAAAGATGAAGGGAGGGTCTTGAATGCTGGATGCTACTTCAGATATTCGACTCAGAGGTTTTATTTTAATAGCACAGATACTGGCACCGGAGGAGGAAATGGAAGACGTCGTTTGGCAATCATTTTAGCTTCAGTATCTGCTGCTGTGGCTGCTCTATTGACTATTGCAACAATTCTTTTCTGTGCAAGAAAGAAAGTACTGAAGAGACGTGAAGAGAGAAAGCAACTAGGTCCTCTTGTGGCAATGGTGAACAAGTCGAAGCTCAATTTTCCATATGAAACTCTCGAGAAGGCCACAAATTATTTCAACCAATCCAATAAACTAGGACAAGGAGGTTCTGGTTCGGTTTATAAAGGAACTCTACCAGATGGCAGAGTTGTAGCAATCAAGAGACTTTTCTTCAATTCAAGACAATGGGTGGATCATTTCTTTAATGAAGTAAATTTGATAAGTGATATCAAACACAAAAATCTTGTTGGGCTGCTGGGATGCAGTATTACCGGTCCTGAGAGTCTCCTTGTTTACGAATACGTGCCGAATCAGAGCCTGCACGATTACCTTTTTGGTAACAACAACGTCCAACCACTGAGTTGGGAATACAGGTTTAAGATAGTATTGGGCACAGCTGAAGGTTTGGCTTATCTTCATGAGGAATCAAAGGTGAAAATCATTCATAGAGACATAAAACTGAGCAATATTCTGCTTGACAATGATTTCACACCAAAGATTGCTGATTTCGGACTTGCTAGATTACTTCCCGAAGATAAGACACATATTAGCACTGCAATTGCTGGCACACTAGGTTACATGGCTCCAGAATATGTAGTGCGCGGCAAGTTATCAGAAAAGGCAGATGTTTACAGTTTTGGGGTTTTTGCCATTGAAGTTATCACAGGAAGGAGAAATGGTTACTTCTTCCATGATTCAATGTCCATTCTGCAATTGGTCTGGAATCATTATAGAGAGAATAAGCTACTTGAAGCTGTTGATCAATTTCTTGGAAGTGATTATCCACGAGAGGCGGCATCTCGTTTGCTGAAAATTTGCCTTGTTTGTGTGCAAGCCTCGGCAGAGCTGAGGCCATCGATGTCGATGGTTGTGAAAATGCTTATAGGACATTGCGAGATTCCGCAGCCAAAACAACCGCCATTTCTTCATCCTTCAAGTGGAGACATAAAACCGGATCTTCATTTGAAAAATTACAAATCCATTGTGGATTCTAACTCACAATCTTCAGGAAATAGCATGACCCAAAGCATCATTGAGCCTAGATGA 1959 40.17 MNFSCNKHHYSIPLFLMLSLCLLNQSMSDPRATEAALVCTNNSASAAERSTFVSNFLDSMDAVTPLIASQRYAAIVNGTGNSSVYAFGECMNDLSQSDCDLCFAQMKTQILRCLPFQLATRGGRLFFDGCYIRYDSYDFFNESLSILDRTVCGKSNFSGDHSVFRANAVKLVRNLSVEAPKNSGFAVGLVNFRNTSVYGLAQCWKFVRGGSCSRCLVDAANEIGSCPPKDEGRVLNAGCYFRYSTQRFYFNSTDTGTGGGNGRRRLAIILASVSAAVAALLTIATILFCARKKVLKRREERKQLGPLVAMVNKSKLNFPYETLEKATNYFNQSNKLGQGGSGSVYKGTLPDGRVVAIKRLFFNSRQWVDHFFNEVNLISDIKHKNLVGLLGCSITGPESLLVYEYVPNQSLHDYLFGNNNVQPLSWEYRFKIVLGTAEGLAYLHEESKVKIIHRDIKLSNILLDNDFTPKIADFGLARLLPEDKTHISTAIAGTLGYMAPEYVVRGKLSEKADVYSFGVFAIEVITGRRNGYFFHDSMSILQLVWNHYRENKLLEAVDQFLGSDYPREAASRLLKICLVCVQASAELRPSMSMVVKMLIGHCEIPQPKQPPFLHPSSGDIKPDLHLKNYKSIVDSNSQSSGNSMTQSIIEPR 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58350804 58354247 - evm.model.ptg000006l.157 HCH1g1050 539069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1050 652 SUPERFAMILY Protein kinase-like (PK-like) 316 624 IPR011009 -
HCH1g1050 652 SMART serkin_6 330 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g1050 652 Gene3D Phosphorylase Kinase; domain 1 290 405 - -
HCH1g1050 652 ProSiteProfiles Gnk2-homologous domain profile. 145 248 IPR002902 -
HCH1g1050 652 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524(InterPro)
HCH1g1050 652 FunFam Cysteine-rich receptor-like protein kinase 3 148 248 - -
HCH1g1050 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g1050 652 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
HCH1g1050 652 MobiDBLite consensus disorder prediction 633 652 - -
HCH1g1050 652 Pfam Salt stress response/antifungal 39 137 IPR002902 -
HCH1g1050 652 Pfam Salt stress response/antifungal 152 246 IPR002902 -
HCH1g1050 652 FunFam Cysteine-rich receptor-like protein kinase 2 296 405 - -
HCH1g1050 652 FunFam Cysteine-rich receptor-like protein kinase 2 32 139 - -
HCH1g1050 652 Pfam Protein kinase domain 331 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g1050 652 ProSiteProfiles Protein kinase domain profile. 330 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g1050 652 Gene3D - 146 248 IPR038408 -
HCH1g1050 652 Gene3D - 33 139 IPR038408 -
HCH1g1050 652 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 169 626 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
HCH1g1050 652 CDD STKc_IRAK 336 598 - -
HCH1g1050 652 FunFam Cysteine-rich receptor-like protein kinase 2 406 605 - -
HCH1g1050 652 Gene3D Transferase(Phosphotransferase) domain 1 406 606 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1050 HCH-Chr1:58350804 HCH4g0039 HCH-Chr4:241828 2.20E-139 dispersed
HCH8g0246 HCH-Chr8:11676060 HCH1g1050 HCH-Chr1:58350804 1.20E-45 transposed
HCH1g1050 HCH-Chr1:58350804 HCH3g0350 HCH-Chr3:2243040 1.20E-140 wgd
HCH1g1050 HCH-Chr1:58350804 HCH4g0038 HCH-Chr4:237869 2.30E-128 wgd
HCH1g1050 HCH-Chr1:58350804 HCH9g0130 HCH-Chr9:723123 2.30E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81298 PF00069 Pkinase 6.00E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1050 - - - 0.0