Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1052 ATGGAGGTCGAGGGCGGCGCCGGAGAATCTCCGCCACAAAAATTCTCTCTTCCAGTAGATTCCGAACACAAATCCACAAAATTCAACATATTCTCAATAGCCGCCCCGCACATGCGAGCTTTCCACCTCTCTTGGATTTCCTTCTTCGCATGCTTCGTTTCTAGTTTCGCAGCAGCTCCGTTACTCCCCATAATCCGCGACAACCTTAATCTCACCGACACAGACATTGGGAACGCCGGAATCGCCTCTGTCTCCGGCGCTGTCTTCGCACGTGTCATGATGGGCACCGCCTGTGACTTAGTGGGCCCACGTCTCGCCTCCGCTTCTCTCATTCTTATTACTTCGCCAGCCGTTTACTTAACTTCCATAGCTTCATCTCCCGCTTCTTTCCTCCTCGTCCGTTTCTTCACCGGATTCTCTCTCGGTACTTTCGTCTCCACCCAGTTCTGGATGAGTTCCATGTTCTCTGCCACCGTCGTCGGTACTGCCAACGGCTTCTCCGGTGGTTGGGGCAACCTCGGAGGCGGCGCAACGCAACTCATCATGCCGTACGTTTTCGCTATCATTAATAACATTGGTGCAACAAAATTCACTGCATGGAGAATAGCTTTCTTTATTCCAGCTTTTTTTCAAACCATGTCGGCTTTCGCCGTGCTTTTGCTCGGTCAAGACACGCCGGACGGGAACTTCAGGCGGCTACAAAAATCCGGGGATAAAGCAAAAGACAAATTCTCAAAAGTATTTTATCAAGGAGTGAGGAATTATAGAGGGTGGATTTTGGCTTTGACTTACGGATATTGTTTTGGAGTGGAATTAACGGTTGATAATATAATAGCAAACTATTTCTATGATAGATTTAATTTGAATCTTCATACAGCAGGGATTGTGGCAGCAAGTTTTGGGTTAGCAAATTTGTTTTCTAGGCCTTATGGAGGGATCCTGTCTGATGTTGTGGCAAAGAGATATGGAATGAGGGGGAGATTATGGGCATTGTGGTTGGTGCAGACAATAGGAGGTGTTCTTTGTGTAATTCTTGGGATGGTTGGTTCTTTGAGTGTTTCAATTGCTGTCATGATTGTTTTCTCTTTGTTTGTTCAAGCTGCTTGCGGCCTTACTTTTGGCGTTGTTCCTTTCGTCTCGAGAAGGTCATTAGGAGTAATATCAGGGATGACAGGAGGAGGAGGAAATGTGGGATCAGTAATAACACAGTTGATATTTTTCAGAGGGTCAAGATATACAAAAGAAAGAGGAATAACTCTAATGGGAGTTATGATAATCTGCTGCTCTCTCCCACTTCTTTTAATCTATTTCCCTCAGTGGGGTGGGATGTTTTGTGGGCCATCATCTAATAGTAAGATTGTTTCTGAAGAAGATTATTATTTATCAGAATGGAGCTCTGAAGAGAAGGAGAAAGGCTTTCATTTGGCAAGTGTGAAATTTGCTGAAAATAGTAAAAGGGAAAGAGGTCATAGATATCATCAGAACACAACAACTAATGATGCCTCAACTACTCCTGTTTAA 1521 44.71 MEVEGGAGESPPQKFSLPVDSEHKSTKFNIFSIAAPHMRAFHLSWISFFACFVSSFAAAPLLPIIRDNLNLTDTDIGNAGIASVSGAVFARVMMGTACDLVGPRLASASLILITSPAVYLTSIASSPASFLLVRFFTGFSLGTFVSTQFWMSSMFSATVVGTANGFSGGWGNLGGGATQLIMPYVFAIINNIGATKFTAWRIAFFIPAFFQTMSAFAVLLLGQDTPDGNFRRLQKSGDKAKDKFSKVFYQGVRNYRGWILALTYGYCFGVELTVDNIIANYFYDRFNLNLHTAGIVAASFGLANLFSRPYGGILSDVVAKRYGMRGRLWALWLVQTIGGVLCVILGMVGSLSVSIAVMIVFSLFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGSVITQLIFFRGSRYTKERGITLMGVMIICCSLPLLLIYFPQWGGMFCGPSSNSKIVSEEDYYLSEWSSEEKEKGFHLASVKFAENSKRERGHRYHQNTTTNDASTTPV 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58362827 58364672 - evm.model.ptg000006l.155 HCH1g1052 539071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1052 506 FunFam High affinity nitrate transporter 2.5 33 229 - -
HCH1g1052 506 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 10 491 IPR044772 GO:0005886(PANTHER)|GO:0015112(InterPro)|GO:0015112(PANTHER)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
HCH1g1052 506 Gene3D MFS general substrate transporter like domains 35 230 IPR036259 -
HCH1g1052 506 Pfam Major Facilitator Superfamily 45 401 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
HCH1g1052 506 ProSiteProfiles Major facilitator superfamily (MFS) profile. 40 440 IPR020846 GO:0022857(InterPro)
HCH1g1052 506 FunFam Nitrate transporter 2.1 241 442 - -
HCH1g1052 506 SUPERFAMILY MFS general substrate transporter 35 437 IPR036259 -
HCH1g1052 506 MobiDBLite consensus disorder prediction 484 506 - -
HCH1g1052 506 CDD MFS_NRT2_like 41 434 IPR044772 GO:0015112(InterPro)
HCH1g1052 506 Gene3D MFS general substrate transporter like domains 239 441 IPR036259 -
HCH1g1052 506 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1052 HCH-Chr1:58362827 HCH3g1217 HCH-Chr3:44977227 2.00E-172 dispersed
HCH1g1052 HCH-Chr1:58362827 HCH4g0040 HCH-Chr4:247930 6.10E-230 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1052 K02575 - csv:101212365 826.239