Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g1093 | ATGCTCCTCAAACTGGGATGCGTTCCAACGATCGTAATCTCCTCCGCCGATGCTGCAAAACAAGTGTTAAAAGTTCATGATCTTGACTGTTGCAGCAGACCTCTCTTAGTTGGTAATGGAAGATTATCATACAACTATTTAGACATAAGTTTTTCACCATATGGTGATCACTGGAGGGAAATTCGAAAGATTTGTGTGCTCGAGCTCTTCAGTATACGACGTGTGCAGTCTTTTCGGGTCACAAGAGAAGAAGAAATCAATCTGCTGATAAACTCAATCATGTCTCAGTCTCAGTCATCATCTTCTTCTTCAGTTGATCTCAGTGAAAAGTCGTATTCGCTTACCACAAGGATAATAAGCAAGGTTGCTTTTGGGAAGATCTTCACAAGGAGTGAGTTTGATAATGCAAATTTTCAAGAAGTTGTTCGTAGAGGTCTAATAGTTTCCGGGAGCTTCACTGCATCTGATTTCTTTCCTTACATTGGTTGGATTGTTGATCGGCTCACTGGTTTTCATGGAAGGTTGGAAAGGAGCTTCAAGGAGTTGGATACTTTCTTCCAACATGTAATCGATGATCGCATCAACCATGGGACGCAGACAACTTCTCAAAATGAAGAAAACGTTGTTGATGTTCTGTTGAAAATGGAGAGAGACCAAACTGAATTTGATGCTTTGCAACTCACTAAAGATTGCATTAAAGCAGTCATCATGGATATATTTCTAGCTGGAGTAGATACGGGAGCAGTCACCATAGTCTGGGCTATGACAGAACTAGTAAGGAATCCAAGAGTGATGAAGAAGCTAAAAGAAGAGATCAGAAGCTGCATAAAGGAAGATAAAGTAAAAGAAAACGAGCTTCACAAGCTTCCATATCTAAAAATGGTGGTAAAAGAGGTTTTGCGGCTGCATACGCCCGCGCCGCTTCTACTTCCAAGAGAAACAATTTCCCATTTTGAGCTCAATGGTTATGATATTGATCCAAAAACTCATGTCCATGTCAATGTTTGGGCAATTGGACGAGACCCAGATTGCTGGAAAAACCCAGAAGAGTTTTTTCCAGAGAGATTTATGGGAAGTTCCATTGATTATAAAGAACAGAACTTTGAGTTCTTACCCTTTGGAGCTGGTCGGAGAAGCTGTCCGGGGATGAATATGGCAGTGATTACGGTGGAGCTTGCTTTGGCAAATCTTCTACTTTGTTTTGATTGGAAATTGCCTCAAGGAATGAAAGAACAAGATATTGACATGGAGGAGGAAGCTGGTTTAACTGTTTCTAAAAAAACTCTTCTTCAACTTGTTCCAGTTCCAGTCACATTCTTGAGTTCTGATTCTTAG | 1335 | 40.6 | MLLKLGCVPTIVISSADAAKQVLKVHDLDCCSRPLLVGNGRLSYNYLDISFSPYGDHWREIRKICVLELFSIRRVQSFRVTREEEINLLINSIMSQSQSSSSSSVDLSEKSYSLTTRIISKVAFGKIFTRSEFDNANFQEVVRRGLIVSGSFTASDFFPYIGWIVDRLTGFHGRLERSFKELDTFFQHVIDDRINHGTQTTSQNEENVVDVLLKMERDQTEFDALQLTKDCIKAVIMDIFLAGVDTGAVTIVWAMTELVRNPRVMKKLKEEIRSCIKEDKVKENELHKLPYLKMVVKEVLRLHTPAPLLLPRETISHFELNGYDIDPKTHVHVNVWAIGRDPDCWKNPEEFFPERFMGSSIDYKEQNFEFLPFGAGRRSCPGMNMAVITVELALANLLLCFDWKLPQGMKEQDIDMEEEAGLTVSKKTLLQLVPVPVTFLSSDS | 444 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 58613469 | 58615345 | + | evm.model.ptg000006l.114 | HCH1g1093 | 539112 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g1093 | 444 | SUPERFAMILY | Cytochrome P450 | 2 | 432 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | PRINTS | P450 superfamily signature | 294 | 305 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | PRINTS | P450 superfamily signature | 371 | 380 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | PRINTS | P450 superfamily signature | 380 | 391 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | PRINTS | P450 superfamily signature | 242 | 259 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | CDD | CYP71-like | 1 | 430 | - | - | |
| HCH1g1093 | 444 | PRINTS | E-class P450 group I signature | 114 | 132 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | PRINTS | E-class P450 group I signature | 231 | 248 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | PRINTS | E-class P450 group I signature | 293 | 311 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | PRINTS | E-class P450 group I signature | 334 | 358 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | PRINTS | E-class P450 group I signature | 370 | 380 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | PRINTS | E-class P450 group I signature | 380 | 403 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | PRINTS | E-class P450 group I signature | 251 | 277 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | Coils | Coil | 265 | 285 | - | - | |
| HCH1g1093 | 444 | FunFam | Cytochrome P450 83B1 | 1 | 433 | - | - | |
| HCH1g1093 | 444 | Pfam | Cytochrome P450 | 3 | 427 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | PANTHER | CYTOCHROME P450 71B11-RELATED | 1 | 435 | IPR050193 | - | |
| HCH1g1093 | 444 | Gene3D | Cytochrome P450 | 1 | 436 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1093 | 444 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 373 | 382 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g1093 | HCH-Chr1:58613469 | HCH3g0384 | HCH-Chr3:2486947 | 5.00E-103 | dispersed | |
| HCH1g1093 | HCH-Chr1:58613469 | HCH1g1094 | HCH-Chr1:58619652 | 2.40E-137 | tandem | |
| HCH1g1093 | HCH-Chr1:58613469 | HCH3g0380 | HCH-Chr3:2401957 | 6.00E-96 | wgd | |
| HCH1g1093 | HCH-Chr1:58613469 | HCH8g1432 | HCH-Chr8:48903513 | 5.20E-100 | wgd |
Pathway information