Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1093 ATGCTCCTCAAACTGGGATGCGTTCCAACGATCGTAATCTCCTCCGCCGATGCTGCAAAACAAGTGTTAAAAGTTCATGATCTTGACTGTTGCAGCAGACCTCTCTTAGTTGGTAATGGAAGATTATCATACAACTATTTAGACATAAGTTTTTCACCATATGGTGATCACTGGAGGGAAATTCGAAAGATTTGTGTGCTCGAGCTCTTCAGTATACGACGTGTGCAGTCTTTTCGGGTCACAAGAGAAGAAGAAATCAATCTGCTGATAAACTCAATCATGTCTCAGTCTCAGTCATCATCTTCTTCTTCAGTTGATCTCAGTGAAAAGTCGTATTCGCTTACCACAAGGATAATAAGCAAGGTTGCTTTTGGGAAGATCTTCACAAGGAGTGAGTTTGATAATGCAAATTTTCAAGAAGTTGTTCGTAGAGGTCTAATAGTTTCCGGGAGCTTCACTGCATCTGATTTCTTTCCTTACATTGGTTGGATTGTTGATCGGCTCACTGGTTTTCATGGAAGGTTGGAAAGGAGCTTCAAGGAGTTGGATACTTTCTTCCAACATGTAATCGATGATCGCATCAACCATGGGACGCAGACAACTTCTCAAAATGAAGAAAACGTTGTTGATGTTCTGTTGAAAATGGAGAGAGACCAAACTGAATTTGATGCTTTGCAACTCACTAAAGATTGCATTAAAGCAGTCATCATGGATATATTTCTAGCTGGAGTAGATACGGGAGCAGTCACCATAGTCTGGGCTATGACAGAACTAGTAAGGAATCCAAGAGTGATGAAGAAGCTAAAAGAAGAGATCAGAAGCTGCATAAAGGAAGATAAAGTAAAAGAAAACGAGCTTCACAAGCTTCCATATCTAAAAATGGTGGTAAAAGAGGTTTTGCGGCTGCATACGCCCGCGCCGCTTCTACTTCCAAGAGAAACAATTTCCCATTTTGAGCTCAATGGTTATGATATTGATCCAAAAACTCATGTCCATGTCAATGTTTGGGCAATTGGACGAGACCCAGATTGCTGGAAAAACCCAGAAGAGTTTTTTCCAGAGAGATTTATGGGAAGTTCCATTGATTATAAAGAACAGAACTTTGAGTTCTTACCCTTTGGAGCTGGTCGGAGAAGCTGTCCGGGGATGAATATGGCAGTGATTACGGTGGAGCTTGCTTTGGCAAATCTTCTACTTTGTTTTGATTGGAAATTGCCTCAAGGAATGAAAGAACAAGATATTGACATGGAGGAGGAAGCTGGTTTAACTGTTTCTAAAAAAACTCTTCTTCAACTTGTTCCAGTTCCAGTCACATTCTTGAGTTCTGATTCTTAG 1335 40.6 MLLKLGCVPTIVISSADAAKQVLKVHDLDCCSRPLLVGNGRLSYNYLDISFSPYGDHWREIRKICVLELFSIRRVQSFRVTREEEINLLINSIMSQSQSSSSSSVDLSEKSYSLTTRIISKVAFGKIFTRSEFDNANFQEVVRRGLIVSGSFTASDFFPYIGWIVDRLTGFHGRLERSFKELDTFFQHVIDDRINHGTQTTSQNEENVVDVLLKMERDQTEFDALQLTKDCIKAVIMDIFLAGVDTGAVTIVWAMTELVRNPRVMKKLKEEIRSCIKEDKVKENELHKLPYLKMVVKEVLRLHTPAPLLLPRETISHFELNGYDIDPKTHVHVNVWAIGRDPDCWKNPEEFFPERFMGSSIDYKEQNFEFLPFGAGRRSCPGMNMAVITVELALANLLLCFDWKLPQGMKEQDIDMEEEAGLTVSKKTLLQLVPVPVTFLSSDS 444
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 58613469 58615345 + evm.model.ptg000006l.114 HCH1g1093 539112
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1093 444 SUPERFAMILY Cytochrome P450 2 432 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 PRINTS P450 superfamily signature 294 305 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 PRINTS P450 superfamily signature 371 380 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 PRINTS P450 superfamily signature 242 259 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 CDD CYP71-like 1 430 - -
HCH1g1093 444 PRINTS E-class P450 group I signature 114 132 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 PRINTS E-class P450 group I signature 231 248 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 PRINTS E-class P450 group I signature 293 311 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 PRINTS E-class P450 group I signature 334 358 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 PRINTS E-class P450 group I signature 370 380 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 PRINTS E-class P450 group I signature 380 403 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 PRINTS E-class P450 group I signature 251 277 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 Coils Coil 265 285 - -
HCH1g1093 444 FunFam Cytochrome P450 83B1 1 433 - -
HCH1g1093 444 Pfam Cytochrome P450 3 427 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 PANTHER CYTOCHROME P450 71B11-RELATED 1 435 IPR050193 -
HCH1g1093 444 Gene3D Cytochrome P450 1 436 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g1093 444 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 373 382 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1093 HCH-Chr1:58613469 HCH3g0384 HCH-Chr3:2486947 5.00E-103 dispersed
HCH1g1093 HCH-Chr1:58613469 HCH1g1094 HCH-Chr1:58619652 2.40E-137 tandem
HCH1g1093 HCH-Chr1:58613469 HCH3g0380 HCH-Chr3:2401957 6.00E-96 wgd
HCH1g1093 HCH-Chr1:58613469 HCH8g1432 HCH-Chr8:48903513 5.20E-100 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1093 - - - 0.0