Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1112 ATGGGGTGTTCTTGTTTTCTGATTATACTTGTCTTTTTCACATATTCTGCCAATTCCCAGGTTAAAGAGTTTATCAGTATAGATTGTGGAGGAACAAAGAATTACACCGACCCACTTACAGGATTATCATGGATTTCAGACACTGGAATCATGAACTCTGGAAGCTCAATACAGGTAGAAAATCCAAATGGAAACTCTATGCAGTATCAAACAAGGAGAGATTTTCCTATAGATAGCAAGAAATACTGTTACACTTTGAACACTGAAGAGAGGAGGAGGTATTTGGTAAGGGCAAGTTTTCAATATGGTAGTCTAAAAAATGAGGAGACATATCCTAAATTTCAGCTCTATCTGGACACAACGAAATGGTCGACCGTTACAATTTTCGATGCTTCGAGAGTGTATGTGAAGGAGATGATTATCAGGGCACCCTCAAATTCATTTGATGTGTGTATATGTTGTGCAACAACTGGTTCTCCATTCATATCGACTCTGGAGCTTCGGCCTTTTAACCTTTCAATGTATGCAACAGACTTTGAAGATGAGTTCTTCCTGGAAGTAGCAGCTAGAGTAAACTTTGGTGCTCTAACCAAGGATGCCATCAGGTACCCAGATGATCCATATGACAGAATTTGGAATTCAGATCTTGAAAAAAGGCAAAACTATCTTGTTGGGGTGGCTCCAGGAACAGAAAGAATTAGTACTTCGAACAATATAGATATAATGACAAGAGAATACCCGCCGGTAAAGGTGATGCAAACTGCAGTTCTTGGCACAAAAGGAGTGCTAAGCTACAGATTAAATTTGGATGATTTCCCTGCCAATGCCAGGGCTTTTGCATATTTTGCTGAGATTGAGGAACTTGGTGCAAATGATACGCGGAAGTTTAAATTGCAAGAACCAAACATACCGGACTATAGCAATGCGGTGGTAAATGTTGCAGAGAATGCCAATGGGACCTATACTCTTTATGAACCAAGTTATATGAATGTGAGTCTGGATTTTGTGCTTTCGTTCTCCTTTGTCAAGACCCGAGATTCTACTCGAGGTCCAATTTTGAATGCGTTGGAAATAAGCAAATATGTAGAGATTGCTGCCAAGACCGATAAGCGAGATGTGACTGCTATCAATGCGTTCCGTATCATGTCTGCAGAAAGTGTTTGGACAGATGAAGGTGATCCTTGTGTTCCCACAAACTGGGAATGGGTTACTTGTAGTGCCACAAAACCACCAAGAATAACTAAAATTGAGCTTTCGGGAAAGAACGCTGATGTTGAAATTCCTTCCGGGATTAATGATATGGATGGGTTAACAGAATTGTGGTTAGACAGTAATTCCCTGACAGGACCGCTGCCTGATATGAATAATCTAATAAACTTAAAAATTCTACATCTAGAGAATAACAAATTGACAGGGCCATTACCTCTTTACCTGGGCAGCTTGCCTAACTTACAAGAATTGTACATTCAGAACAATACTTTTTCGGGTGAAATACCTCCTGAACTATTGACAGGGAAACTCATCTTCCATTATGATGGTAACCCAACTCTGCACAAGAGTAAACAATACAAGATACATCCTAAGGTTATCGTCGGAATTTCAGCTGGAGTGCTTGTGATTCTGTCCTTTCTACTTTTAGGAAGTTTACTATTGCTGCGTAGGCTTCGAAGAACAACACCATATCAGAAAAGTAGTGAAAGAGGTGGTTCTCTGCATACCAGCACCAAGCGTTCTAATGCCTATTCAATTGGTAGAGGGGATGAAGGCATAGCCTACTATTTCTCTCTTTCTGAGCTGGAAGAAGCTACTAACAATTTTTCTAAGAAAATTGGTAAAGGTAGCTTTGGACCTGTCTATTATGGGAAAATGACCGATGGAAAAGAAGTGGCGGTTAAAATCATGGCGGATTCATCGACACATATGAATCAACAATTTATGACTGAGGTAGCCCTCTTATCAAGAATTCATCATAGAAATTTGGTTCCTTTAGTAGGATACTGTGAAGAAGAACATCAACGGATTCTGGTTTATGAATATATGCACAACGGAACCTTGCGAGATCACCTATACGGTCCTTCCGACCAGAAGCGCTTGGACTGGCTAGCTCGCCTCCACATTGCAGAAGATGCAGCTAAAGGGCTCGAGTATTTGCATACGGGATGCAGTCCTAGTATCATTCATCGAGATGTAAAAACAAGCAACATCCTCCTAGACATCAATATGAGAGCCAAAGTTTCTGATTTTGGACTTTCAAGGCAGGCTGAGGAAGATTTGACCCATGTATCTAGCGTTGCTCGAGGGACAGTAGGCTACTTGGATCCTGAGTACTATGCTTGTCAACAATTGACCGAAAAGAGCGATGTGTACAGTTTTGGTGTTGTTCTGCTGGAACTGATCTCAGGGAAGAAACCCGTCTCGCCAGAAGACTATGGCAGTGAATTAAATATTGTTCACTGGGCGAGGTCCCTTATCCACAAAGGGGATGTGACAAGCATCATAGATCCTTTCCTACAAGGAAATATCAAGATTGAGTCTATCTGGAGAATTGCTGAAGTTGCCATCCAGTGTGTGCAGCAGCATGGAGTTTCCAGACCAAGGATGCAGGAAATAATCTTGGCTATACAAGAAGCTACTAAGATCGAAAAGGGCACTGATGCAAATCAAAAACTATCCTCATCAGGCAGTTCGAAAGCACAATCATCCCGGAAAACGTTGCTAACTACTTTCCTTGAAATCGAGAGCCCCGACTTATCAAACGGCTCCCTGCTACCATCTGCAAGATGA 2784 41.38 MGCSCFLIILVFFTYSANSQVKEFISIDCGGTKNYTDPLTGLSWISDTGIMNSGSSIQVENPNGNSMQYQTRRDFPIDSKKYCYTLNTEERRRYLVRASFQYGSLKNEETYPKFQLYLDTTKWSTVTIFDASRVYVKEMIIRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDEFFLEVAARVNFGALTKDAIRYPDDPYDRIWNSDLEKRQNYLVGVAPGTERISTSNNIDIMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAFAYFAEIEELGANDTRKFKLQEPNIPDYSNAVVNVAENANGTYTLYEPSYMNVSLDFVLSFSFVKTRDSTRGPILNALEISKYVEIAAKTDKRDVTAINAFRIMSAESVWTDEGDPCVPTNWEWVTCSATKPPRITKIELSGKNADVEIPSGINDMDGLTELWLDSNSLTGPLPDMNNLINLKILHLENNKLTGPLPLYLGSLPNLQELYIQNNTFSGEIPPELLTGKLIFHYDGNPTLHKSKQYKIHPKVIVGISAGVLVILSFLLLGSLLLLRRLRRTTPYQKSSERGGSLHTSTKRSNAYSIGRGDEGIAYYFSLSELEEATNNFSKKIGKGSFGPVYYGKMTDGKEVAVKIMADSSTHMNQQFMTEVALLSRIHHRNLVPLVGYCEEEHQRILVYEYMHNGTLRDHLYGPSDQKRLDWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYACQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGSELNIVHWARSLIHKGDVTSIIDPFLQGNIKIESIWRIAEVAIQCVQQHGVSRPRMQEIILAIQEATKIEKGTDANQKLSSSGSSKAQSSRKTLLTTFLEIESPDLSNGSLLPSAR 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58734409 58739180 - evm.model.ptg000006l.95 HCH1g1112 539131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1112 927 FunFam Leucine-rich repeat receptor-like protein kinase 575 679 - -
HCH1g1112 927 SUPERFAMILY L domain-like 396 502 - -
HCH1g1112 927 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515(InterPro)
HCH1g1112 927 Pfam Leucine Rich Repeat 483 502 IPR001611 GO:0005515(InterPro)
HCH1g1112 927 ProSiteProfiles Protein kinase domain profile. 604 878 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g1112 927 Gene3D Phosphorylase Kinase; domain 1 582 679 - -
HCH1g1112 927 Gene3D Transferase(Phosphotransferase) domain 1 680 900 - -
HCH1g1112 927 Pfam Malectin-like domain 27 360 IPR024788 -
HCH1g1112 927 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 680 887 - -
HCH1g1112 927 Gene3D Ribonuclease Inhibitor 374 515 IPR032675 -
HCH1g1112 927 SMART serkin_6 604 863 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g1112 927 Pfam Protein tyrosine and serine/threonine kinase 606 871 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g1112 927 SUPERFAMILY Protein kinase-like (PK-like) 590 871 IPR011009 -
HCH1g1112 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 725 737 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g1112 927 PANTHER OS07G0107800 PROTEIN-RELATED 454 882 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1378 HCH-Chr11:45489167 HCH1g1112 HCH-Chr1:58734409 1.10E-102 dispersed
HCH13g0658 HCH-Chr13:5208819 HCH1g1112 HCH-Chr1:58734409 6.50E-60 dispersed
HCH1g1112 HCH-Chr1:58734409 HCH6g0131 HCH-Chr6:1635589 3.70E-116 dispersed
HCH6g0136 HCH-Chr6:1842128 HCH1g1112 HCH-Chr1:58734409 9.90E-60 dispersed
HCH6g0137 HCH-Chr6:1847272 HCH1g1112 HCH-Chr1:58734409 2.10E-92 dispersed
HCH7g1113 HCH-Chr7:43847739 HCH1g1112 HCH-Chr1:58734409 1.50E-50 dispersed
HCH9g0381 HCH-Chr9:2423616 HCH1g1112 HCH-Chr1:58734409 3.80E-62 dispersed
HCH1g1112 HCH-Chr1:58734409 HCH11g0245 HCH-Chr11:2218111 3.00E-235 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81300 PF12819 Malectin_like 1.20E-88 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1112 - - - 0.0