Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1114 ATGGAAAATGGTTTTCCTGTTCAACGAAACCATGCGTTCCCGACTGGTCTTCATGTTCTCGTTGTCGATGACGATTTGACATGGCTGAAGATTCTGGAGAAAATGCTCAAGAAATGTTCTTATGAAGTGACGACATGCTGCTTAGCAAGGGAGGCTTTAAACTTGCTTCGAGAGAGGAAATATCGATATGATATCGTAATCAGCGATGTCAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGACCTCCCAGTCATTATGATGTCTGTTGATGGTGAAACTAGCAGAGTGATGAGGGGAGTGGAGCACGGAGCATGTGATTATCTTCTTAAGCCAATAAGACTGAAGGAACTGAGGAACATATGGCAGCATGTCTTAAGGAAGAGGATATATGAGACAGGATGTATTGATAGCCTCGAAGTCGTTCCAATGACGAGAAGCGCATCAGATCAGTATGATTGGCAGATCCTTGGAGGAAAAGACCACCTTACTTCCTTGAAGAAAAGGAAGGACATCAATGAGCATGATGACAAAGACTGTGCCGATTCTTCCTGCATGAAGAAATCTAGAGTCGTTTGGTCTGTTGATCTTCACCAGAAATTTGTTGATGCAGTAAATCAGATTGGGTTTGACAAAGTTGGCCCTAAGAAAATACTCGATATCATGAAGGTGCCGTGGCTAACGAGAGAAAATGTTGCGAGTCACTTGCAGAAGTATCGCCTCTACTTGACTAGGCTGCATAAAGAAAATGAGCTGCAAACGATTTATAGTGAAAATAAGCGTTCTGATTCATCCTTCAAAGATACTGACAGGAACTTTAGCCTTCATGAATCAGTATACTTGTACCAAGATAACGCTGCAGAGGGCGAAGACAGTTTCTCTGGTAACCATCTTCTTCAGAATATTCATTCCAAAAGCAATGGAAGTCATCTACAGGGGATATTTCCAGAACCAGCAAGTTCTGCTACTAGCGGTAATCCTGTTTCGAAGAATAAAAGATATTCACAATCGGAGTTCAATCATACCATAACATCACCAGAATCTAAAGAAAATTTTGAATCGCTTAATCCTAATACGCGAGATCACTACTTGTGGACTGGAGCTACTGAATTTCAACTCATACAAGAACACAAACCACTTACTTATTTTGAAAGTGGCTTTGGTAGCCTTCAAGTTGATCAATTACAATCAATTCCCCCGTTTAGTTCTGGATCTTCCATACAAGAGAACGATACATTATGTCGGGTCGAGAATACGTTCGATACCTGCTATCGGGATCCAACCAGAAGTACTAGTAGAATGGACTCTTTCCAAATCCAACCCATCGCTAACAACAATACATTTGAGATTTTAGCAGCTGCGATGAGCAGAAAGGATCCGAGCTGCACAACCAATTTAAGATGCAGATTGCCTTTTGCATATATGGATGATGACTTTCACACTTCTTGTTTCGAAACTGATAATTCAATCAATCACATTCCACATGAGAAGCCAGATAATCTTCCATCATACACTGATCGAGAGATCTCAAATAACATGAATGATGCCCTGAGAAGTTCTTGGGAATATTCTAATGACCCGAGCGAATATCGTGCAGGAGATCAAGGCCTATACATAGCTTGA 1644 41.12 MENGFPVQRNHAFPTGLHVLVVDDDLTWLKILEKMLKKCSYEVTTCCLAREALNLLRERKYRYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMRGVEHGACDYLLKPIRLKELRNIWQHVLRKRIYETGCIDSLEVVPMTRSASDQYDWQILGGKDHLTSLKKRKDINEHDDKDCADSSCMKKSRVVWSVDLHQKFVDAVNQIGFDKVGPKKILDIMKVPWLTRENVASHLQKYRLYLTRLHKENELQTIYSENKRSDSSFKDTDRNFSLHESVYLYQDNAAEGEDSFSGNHLLQNIHSKSNGSHLQGIFPEPASSATSGNPVSKNKRYSQSEFNHTITSPESKENFESLNPNTRDHYLWTGATEFQLIQEHKPLTYFESGFGSLQVDQLQSIPPFSSGSSIQENDTLCRVENTFDTCYRDPTRSTSRMDSFQIQPIANNNTFEILAAAMSRKDPSCTTNLRCRLPFAYMDDDFHTSCFETDNSINHIPHEKPDNLPSYTDREISNNMNDALRSSWEYSNDPSEYRAGDQGLYIA 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58745098 58747497 + evm.model.ptg000006l.93 HCH1g1114 539133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1114 547 PIRSF RR_ARR_type-B 2 542 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
HCH1g1114 547 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
HCH1g1114 547 MobiDBLite consensus disorder prediction 316 361 - -
HCH1g1114 547 SUPERFAMILY CheY-like 15 140 IPR011006 -
HCH1g1114 547 Gene3D - 192 254 - -
HCH1g1114 547 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
HCH1g1114 547 Gene3D - 17 183 - -
HCH1g1114 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 281 IPR045279 GO:0009736(InterPro)
HCH1g1114 547 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 248 IPR006447 GO:0003677(InterPro)
HCH1g1114 547 SUPERFAMILY Homeodomain-like 192 252 IPR009057 -
HCH1g1114 547 CDD REC_typeB_ARR-like 19 133 - -
HCH1g1114 547 Pfam Response regulator receiver domain 19 127 IPR001789 GO:0000160(InterPro)
HCH1g1114 547 Pfam Myb-like DNA-binding domain 197 247 IPR001005 -
HCH1g1114 547 FunFam Two-component response regulator 191 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1114 K14491 - - csv:101204370 484.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1114 HCH-Chr1:58745098 HCH7g1048 HCH-Chr7:42435263 6.50E-76 dispersed
HCH1g1114 HCH-Chr1:58745098 HCH4g0079 HCH-Chr4:431322 1.40E-147 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g1114 . 52 253 Response Regulator Gene Family AT3G16857 52.0 1.1e-52 204.9
HCH8g0917 . 18 421 Response Regulator Gene Family AT4G31920 52.1 1.1e-91 334.3
HCH12g0404 . 1 360 Response Regulator Gene Family AT4G31920 54.2 5.2e-89 325.5
HCH10g0367 . 17 338 Response Regulator Gene Family AT4G31920 56.8 1.0e-84 311.2
HCH6g1728 . 2 257 Response Regulator Gene Family AT4G31920 55.1 4.0e-73 272.7
HCH7g1048 . 16 293 Response Regulator Gene Family AT4G31920 51.6 9.1e-70 261.5
HCH4g0079 . 11 258 Response Regulator Gene Family AT4G31920 52.2 4.4e-64 242.7
HCH7g1048 . 99 262 Response Regulator Gene Family AT1G67710 54.4 3.0e-39 159.8
HCH12g0404 . 93 251 Response Regulator Gene Family AT1G67710 52.6 4.0e-39 159.5
HCH8g0917 . 99 269 Response Regulator Gene Family AT1G67710 51.1 7.5e-38 155.2
HCH8g0917 . 16 389 Response Regulator Gene Family AT2G25180 56.2 2.0e-99 360.1
HCH10g0367 . 17 436 Response Regulator Gene Family AT2G25180 50.6 7.3e-97 351.7
HCH4g0079 . 11 255 Response Regulator Gene Family AT2G25180 55.4 2.4e-68 256.9
HCH1g1114 . 13 267 Response Regulator Gene Family AT2G25180 53.3 3.0e-66 250.0
HCH6g1728 . 65 298 Response Regulator Gene Family AT2G01760 50.2 1.7e-52 203.4
HCH4g0079 . 72 263 Response Regulator Gene Family AT2G01760 51.2 6.7e-49 191.4
HCH1g1114 . 72 256 Response Regulator Gene Family AT2G01760 50.5 4.5e-45 178.7
HCH10g0367 . 79 275 Response Regulator Gene Family AT2G01760 51.2 2.5e-40 162.9
HCH4g0079 . 9 257 Response Regulator Gene Family AT5G58080 50.4 4.7e-62 236.1
HCH6g1728 . 3 228 Response Regulator Gene Family AT4G16110 65.4 9.9e-79 291.6
HCH7g1048 . 18 242 Response Regulator Gene Family AT4G16110 65.7 2.4e-77 287.0
HCH12g0404 . 11 229 Response Regulator Gene Family AT4G16110 58.2 3.5e-60 229.9
HCH4g0079 . 10 234 Response Regulator Gene Family AT4G16110 53.6 1.6e-57 221.1
HCH10g0367 . 16 264 Response Regulator Gene Family AT4G16110 51.7 6.2e-57 219.2
HCH8g0917 . 17 249 Response Regulator Gene Family AT4G16110 55.2 2.4e-56 217.2
HCH1g1114 . 13 232 Response Regulator Gene Family AT4G16110 51.3 2.1e-52 204.1
HCH8g1351 . 20 176 Response Regulator Gene Family AT3G48100 71.7 1.2e-55 213.0
HCH1g0993 . 29 155 Response Regulator Gene Family AT3G48100 71.5 5.6e-48 187.6
HCH9g1007 . 10 158 Response Regulator Gene Family AT3G48100 56.4 1.9e-40 162.5
HCH13g0137 . 1 161 Response Regulator Gene Family AT3G48100 50.6 7.3e-40 160.6
HCH1g0268 . 2 141 Response Regulator Gene Family AT3G48100 55.6 1.3e-39 159.8
HCH1g0631 . 11 178 Response Regulator Gene Family AT3G48100 50.6 1.3e-39 159.8
HCH10g1194 . 10 147 Response Regulator Gene Family AT3G48100 59.4 3.6e-39 158.3
HCH1g0993 . 1 174 Response Regulator Gene Family AT1G59940 61.7 9.2e-54 207.6
HCH8g1351 . 19 158 Response Regulator Gene Family AT1G59940 65.7 1.8e-49 193.4
HCH1g0631 . 9 149 Response Regulator Gene Family AT1G59940 60.3 1.2e-40 164.1
HCH10g1194 . 8 148 Response Regulator Gene Family AT1G59940 61.7 3.4e-40 162.5
HCH1g0268 . 13 140 Response Regulator Gene Family AT1G59940 63.3 2.2e-39 159.8
HCH13g0137 . 17 159 Response Regulator Gene Family AT1G59940 57.6 8.3e-39 157.9
HCH9g1007 . 11 154 Response Regulator Gene Family AT1G59940 56.9 8.3e-39 157.9
HCH1g0993 . 23 199 Response Regulator Gene Family AT1G10470 63.1 5.5e-51 198.0
HCH8g1351 . 19 175 Response Regulator Gene Family AT1G10470 63.1 6.7e-49 191.0
HCH9g1007 . 17 168 Response Regulator Gene Family AT1G10470 57.5 5.7e-40 161.4
HCH1g0631 . 11 171 Response Regulator Gene Family AT1G10470 53.4 2.8e-39 159.1
HCH1g0268 . 13 140 Response Regulator Gene Family AT1G10470 62.5 3.7e-39 158.7
HCH10g1194 . 10 148 Response Regulator Gene Family AT1G10470 60.4 8.3e-39 157.5
HCH13g0137 . 17 159 Response Regulator Gene Family AT1G10470 57.6 1.8e-38 156.4
HCH8g1351 . 20 176 Response Regulator Gene Family AT3G48100 71.7 1.2e-55 213.0
HCH1g0993 . 29 155 Response Regulator Gene Family AT3G48100 71.5 5.6e-48 187.6
HCH9g1007 . 10 158 Response Regulator Gene Family AT3G48100 56.4 1.9e-40 162.5
HCH13g0137 . 1 161 Response Regulator Gene Family AT3G48100 50.6 7.3e-40 160.6
HCH1g0268 . 2 141 Response Regulator Gene Family AT3G48100 55.6 1.3e-39 159.8
HCH1g0631 . 11 178 Response Regulator Gene Family AT3G48100 50.6 1.3e-39 159.8
HCH10g1194 . 10 147 Response Regulator Gene Family AT3G48100 59.4 3.6e-39 158.3
HCH8g1351 . 29 161 Response Regulator Gene Family AT5G62920 76.7 7.6e-53 203.8
HCH1g0993 . 15 155 Response Regulator Gene Family AT5G62920 65.8 8.2e-47 183.7
HCH9g1007 . 12 156 Response Regulator Gene Family AT5G62920 57.2 2.2e-39 159.1
HCH13g0137 . 1 157 Response Regulator Gene Family AT5G62920 53.8 3.7e-39 158.3
HCH10g1194 . 10 147 Response Regulator Gene Family AT5G62920 59.4 8.2e-39 157.1
HCH1g0268 . 13 141 Response Regulator Gene Family AT5G62920 60.5 3.1e-38 155.2
HCH1g0631 . 11 168 Response Regulator Gene Family AT5G62920 51.9 5.3e-38 154.5
HCH8g1351 . 15 176 Response Regulator Gene Family AT1G19050 66.7 5.0e-53 204.5
HCH1g0993 . 28 184 Response Regulator Gene Family AT1G19050 56.6 3.6e-43 171.8
HCH9g1007 . 11 161 Response Regulator Gene Family AT1G19050 53.0 1.6e-38 156.4
HCH1g0268 . 13 141 Response Regulator Gene Family AT1G19050 58.9 2.6e-38 155.6
HCH1g0631 . 9 171 Response Regulator Gene Family AT1G19050 51.5 3.5e-38 155.2
HCH13g0137 . 17 151 Response Regulator Gene Family AT1G19050 59.6 2.2e-37 152.5
HCH9g1007 . 8 251 Response Regulator Gene Family AT2G41310 56.6 3.4e-63 238.4
HCH10g1194 . 1 150 Response Regulator Gene Family AT2G41310 69.3 5.4e-53 204.5
HCH1g0631 . 7 153 Response Regulator Gene Family AT2G41310 67.3 1.2e-49 193.4
HCH13g0137 . 10 158 Response Regulator Gene Family AT2G41310 59.6 1.2e-44 176.8
HCH1g0993 . 25 155 Response Regulator Gene Family AT2G41310 59.6 2.8e-41 165.6
HCH1g0268 . 13 141 Response Regulator Gene Family AT2G41310 58.1 3.6e-41 165.2
HCH8g1351 . 28 158 Response Regulator Gene Family AT2G41310 59.0 3.1e-40 162.2
HCH12g0816 . 8 157 Response Regulator Gene Family AT2G41310 51.7 9.0e-40 160.6
HCH9g1007 . 8 251 Response Regulator Gene Family AT3G57040 55.9 1.6e-63 239.6
HCH10g1194 . 1 150 Response Regulator Gene Family AT3G57040 71.5 3.5e-55 211.8
HCH1g0631 . 1 153 Response Regulator Gene Family AT3G57040 70.1 5.6e-53 204.5
HCH13g0137 . 13 158 Response Regulator Gene Family AT3G57040 61.2 5.6e-45 177.9
HCH1g0993 . 25 155 Response Regulator Gene Family AT3G57040 59.4 4.5e-42 168.3
HCH1g0268 . 13 141 Response Regulator Gene Family AT3G57040 59.4 7.6e-42 167.5
HCH8g1351 . 28 186 Response Regulator Gene Family AT3G57040 53.3 1.7e-41 166.4
HCH12g0816 . 8 157 Response Regulator Gene Family AT3G57040 53.6 6.5e-41 164.5
HCH8g1351 . 26 181 Response Regulator Gene Family AT1G74890 70.7 2.6e-54 208.8
HCH1g0993 . 25 186 Response Regulator Gene Family AT1G74890 60.8 4.5e-46 181.4
HCH9g1007 . 12 164 Response Regulator Gene Family AT1G74890 55.8 1.7e-40 162.9
HCH1g0268 . 5 137 Response Regulator Gene Family AT1G74890 60.2 1.1e-39 160.2
HCH1g0631 . 9 154 Response Regulator Gene Family AT1G74890 56.2 1.1e-39 160.2
HCH10g1194 . 8 142 Response Regulator Gene Family AT1G74890 58.5 7.7e-38 154.1
HCH13g0137 . 17 151 Response Regulator Gene Family AT1G74890 58.1 8.5e-37 150.6
HCH1g0268 . 13 142 Response Regulator Gene Family AT2G40670 71.4 1.7e-48 189.1
HCH1g0993 . 26 156 Response Regulator Gene Family AT2G40670 58.4 5.0e-40 161.0
HCH8g1351 . 27 158 Response Regulator Gene Family AT2G40670 60.3 2.5e-39 158.7
HCH1g0631 . 7 152 Response Regulator Gene Family AT2G40670 55.4 4.7e-38 154.5
HCH13g0137 . 14 160 Response Regulator Gene Family AT2G40670 51.7 8.9e-37 150.2
HCH1g0268 . 4 142 Response Regulator Gene Family AT3G56380 69.9 7.7e-51 196.8
HCH1g0993 . 26 151 Response Regulator Gene Family AT3G56380 60.8 4.7e-40 161.0
HCH8g1351 . 21 153 Response Regulator Gene Family AT3G56380 62.0 6.2e-40 160.6
HCH1g0631 . 3 152 Response Regulator Gene Family AT3G56380 53.6 3.1e-39 158.3
HCH9g1007 . 13 156 Response Regulator Gene Family AT3G56380 55.2 1.5e-38 156.0
HCH13g0137 . 13 155 Response Regulator Gene Family AT3G56380 54.5 4.4e-38 154.5
HCH10g1194 . 4 149 Response Regulator Gene Family AT3G56380 53.7 3.7e-37 151.4
HCH1g1114 . 52 253 Response Regulator Gene Family AT3G16857 52.0 1.1e-52 204.9
HCH6g1728 . 3 228 Response Regulator Gene Family AT4G16110 65.4 9.9e-79 291.6
HCH7g1048 . 18 242 Response Regulator Gene Family AT4G16110 65.7 2.4e-77 287.0
HCH12g0404 . 11 229 Response Regulator Gene Family AT4G16110 58.2 3.5e-60 229.9
HCH4g0079 . 10 234 Response Regulator Gene Family AT4G16110 53.6 1.6e-57 221.1
HCH10g0367 . 16 264 Response Regulator Gene Family AT4G16110 51.7 6.2e-57 219.2
HCH8g0917 . 17 249 Response Regulator Gene Family AT4G16110 55.2 2.4e-56 217.2
HCH1g1114 . 13 232 Response Regulator Gene Family AT4G16110 51.3 2.1e-52 204.1
HCH8g0917 . 18 421 Response Regulator Gene Family AT4G31920 52.1 1.1e-91 334.3
HCH12g0404 . 1 360 Response Regulator Gene Family AT4G31920 54.2 5.2e-89 325.5
HCH10g0367 . 17 338 Response Regulator Gene Family AT4G31920 56.8 1.0e-84 311.2
HCH6g1728 . 2 257 Response Regulator Gene Family AT4G31920 55.1 4.0e-73 272.7
HCH7g1048 . 16 293 Response Regulator Gene Family AT4G31920 51.6 9.1e-70 261.5
HCH4g0079 . 11 258 Response Regulator Gene Family AT4G31920 52.2 4.4e-64 242.7
HCH7g1048 . 99 262 Response Regulator Gene Family AT1G67710 54.4 3.0e-39 159.8
HCH12g0404 . 93 251 Response Regulator Gene Family AT1G67710 52.6 4.0e-39 159.5
HCH8g0917 . 99 269 Response Regulator Gene Family AT1G67710 51.1 7.5e-38 155.2
HCH8g0917 . 16 389 Response Regulator Gene Family AT2G25180 56.2 2.0e-99 360.1
HCH10g0367 . 17 436 Response Regulator Gene Family AT2G25180 50.6 7.3e-97 351.7
HCH4g0079 . 11 255 Response Regulator Gene Family AT2G25180 55.4 2.4e-68 256.9
HCH1g1114 . 13 267 Response Regulator Gene Family AT2G25180 53.3 3.0e-66 250.0
HCH6g1728 . 65 298 Response Regulator Gene Family AT2G01760 50.2 1.7e-52 203.4
HCH4g0079 . 72 263 Response Regulator Gene Family AT2G01760 51.2 6.7e-49 191.4
HCH1g1114 . 72 256 Response Regulator Gene Family AT2G01760 50.5 4.5e-45 178.7
HCH10g0367 . 79 275 Response Regulator Gene Family AT2G01760 51.2 2.5e-40 162.9
HCH4g0079 . 9 257 Response Regulator Gene Family AT5G58080 50.4 4.7e-62 236.1
HCH9g0616 . 58 279 Response Regulator Gene Family AT5G60100 60.1 2.4e-59 226.5
HCH5g0915 . 64 224 Response Regulator Gene Family AT5G60100 55.8 1.3e-44 177.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007972 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 3 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33115 PF00072 Response_reg 1.30E-23 CL0304 HCH TF