Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1114 ATGGAAAATGGTTTTCCTGTTCAACGAAACCATGCGTTCCCGACTGGTCTTCATGTTCTCGTTGTCGATGACGATTTGACATGGCTGAAGATTCTGGAGAAAATGCTCAAGAAATGTTCTTATGAAGTGACGACATGCTGCTTAGCAAGGGAGGCTTTAAACTTGCTTCGAGAGAGGAAATATCGATATGATATCGTAATCAGCGATGTCAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGACCTCCCAGTCATTATGATGTCTGTTGATGGTGAAACTAGCAGAGTGATGAGGGGAGTGGAGCACGGAGCATGTGATTATCTTCTTAAGCCAATAAGACTGAAGGAACTGAGGAACATATGGCAGCATGTCTTAAGGAAGAGGATATATGAGACAGGATGTATTGATAGCCTCGAAGTCGTTCCAATGACGAGAAGCGCATCAGATCAGTATGATTGGCAGATCCTTGGAGGAAAAGACCACCTTACTTCCTTGAAGAAAAGGAAGGACATCAATGAGCATGATGACAAAGACTGTGCCGATTCTTCCTGCATGAAGAAATCTAGAGTCGTTTGGTCTGTTGATCTTCACCAGAAATTTGTTGATGCAGTAAATCAGATTGGGTTTGACAAAGTTGGCCCTAAGAAAATACTCGATATCATGAAGGTGCCGTGGCTAACGAGAGAAAATGTTGCGAGTCACTTGCAGAAGTATCGCCTCTACTTGACTAGGCTGCATAAAGAAAATGAGCTGCAAACGATTTATAGTGAAAATAAGCGTTCTGATTCATCCTTCAAAGATACTGACAGGAACTTTAGCCTTCATGAATCAGTATACTTGTACCAAGATAACGCTGCAGAGGGCGAAGACAGTTTCTCTGGTAACCATCTTCTTCAGAATATTCATTCCAAAAGCAATGGAAGTCATCTACAGGGGATATTTCCAGAACCAGCAAGTTCTGCTACTAGCGGTAATCCTGTTTCGAAGAATAAAAGATATTCACAATCGGAGTTCAATCATACCATAACATCACCAGAATCTAAAGAAAATTTTGAATCGCTTAATCCTAATACGCGAGATCACTACTTGTGGACTGGAGCTACTGAATTTCAACTCATACAAGAACACAAACCACTTACTTATTTTGAAAGTGGCTTTGGTAGCCTTCAAGTTGATCAATTACAATCAATTCCCCCGTTTAGTTCTGGATCTTCCATACAAGAGAACGATACATTATGTCGGGTCGAGAATACGTTCGATACCTGCTATCGGGATCCAACCAGAAGTACTAGTAGAATGGACTCTTTCCAAATCCAACCCATCGCTAACAACAATACATTTGAGATTTTAGCAGCTGCGATGAGCAGAAAGGATCCGAGCTGCACAACCAATTTAAGATGCAGATTGCCTTTTGCATATATGGATGATGACTTTCACACTTCTTGTTTCGAAACTGATAATTCAATCAATCACATTCCACATGAGAAGCCAGATAATCTTCCATCATACACTGATCGAGAGATCTCAAATAACATGAATGATGCCCTGAGAAGTTCTTGGGAATATTCTAATGACCCGAGCGAATATCGTGCAGGAGATCAAGGCCTATACATAGCTTGA 1644 41.12 MENGFPVQRNHAFPTGLHVLVVDDDLTWLKILEKMLKKCSYEVTTCCLAREALNLLRERKYRYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMRGVEHGACDYLLKPIRLKELRNIWQHVLRKRIYETGCIDSLEVVPMTRSASDQYDWQILGGKDHLTSLKKRKDINEHDDKDCADSSCMKKSRVVWSVDLHQKFVDAVNQIGFDKVGPKKILDIMKVPWLTRENVASHLQKYRLYLTRLHKENELQTIYSENKRSDSSFKDTDRNFSLHESVYLYQDNAAEGEDSFSGNHLLQNIHSKSNGSHLQGIFPEPASSATSGNPVSKNKRYSQSEFNHTITSPESKENFESLNPNTRDHYLWTGATEFQLIQEHKPLTYFESGFGSLQVDQLQSIPPFSSGSSIQENDTLCRVENTFDTCYRDPTRSTSRMDSFQIQPIANNNTFEILAAAMSRKDPSCTTNLRCRLPFAYMDDDFHTSCFETDNSINHIPHEKPDNLPSYTDREISNNMNDALRSSWEYSNDPSEYRAGDQGLYIA 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58745098 58747497 + evm.model.ptg000006l.93 HCH1g1114 539133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1114 547 PIRSF RR_ARR_type-B 2 542 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
HCH1g1114 547 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
HCH1g1114 547 MobiDBLite consensus disorder prediction 316 361 - -
HCH1g1114 547 SUPERFAMILY CheY-like 15 140 IPR011006 -
HCH1g1114 547 Gene3D - 192 254 - -
HCH1g1114 547 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
HCH1g1114 547 Gene3D - 17 183 - -
HCH1g1114 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 281 IPR045279 GO:0009736(InterPro)
HCH1g1114 547 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 248 IPR006447 GO:0003677(InterPro)
HCH1g1114 547 SUPERFAMILY Homeodomain-like 192 252 IPR009057 -
HCH1g1114 547 CDD REC_typeB_ARR-like 19 133 - -
HCH1g1114 547 Pfam Response regulator receiver domain 19 127 IPR001789 GO:0000160(InterPro)
HCH1g1114 547 Pfam Myb-like DNA-binding domain 197 247 IPR001005 -
HCH1g1114 547 FunFam Two-component response regulator 191 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1114 HCH-Chr1:58745098 HCH7g1048 HCH-Chr7:42435263 6.50E-76 dispersed
HCH1g1114 HCH-Chr1:58745098 HCH4g0079 HCH-Chr4:431322 1.40E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33115 PF00072 Response_reg 1.30E-23 CL0304 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1114 K14491 - csv:101204370 484.567