Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1136 ATGGAAGTTCCTGTAATTGAAGAAATATTTTTTGCTGCTGCTGATGCCAAGTTACATGGAGAAATGTACAAGAAGCTTGCTGCTGTTTATTGTCAAGTTATGTCGATTTTTCCTTCCTTAGAAGCAGCACGGCCAAGGAGCAAATCCGGTATTCGGGCTTTATGTTCATTACATGTAGCTCTTGAGAAGACTAAGAATATTCTTCAGCATTGCTCAGAATCTAGCAAACTTTACTTGGCGATAACCGGAGATGCTGTTCTTGCGAAATTTGAAAAGGCGAAAGGTTCACTTGAAGAGAGTCTTAGATGTGTTGAAGATATTGTTTCACAGTCTATTGGTTATCAGATTCAGCAGATACTGAATGAACTCAAGGGCACTGTATTTTTACTCGATCCACTAGAGAAGCAAGTTGGTGATGACATTATTGCATTACTTTTGCAAGAAAGAAAATTCGATGATTCTAATGGCCTTAACGAGCTGGAGCATTTTCATCAGGCTGCCACAAAACTTGGAATCACCTCCTCCAAAGCAGCTCTCACAGAGAGGAGAGCTCTTAAGAGACTCGTAGAACGAGCTCGCTCAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTATCTTTTGCATCTCATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGTCAGATGATAATGATTCACAGGGGTCAAGTCCTTGTTCTCCCACTGTTCAGAGTTCTCTCGAGGATAGTGGAGTAACAGCTAATGGTCAAGCCTTTGAACAGCAGCTTTCGAAGCTTAGTTCTTTTAATTTCAAGCCAACATATGGGGTATCAGATCAGATACCTCTACCACCTGAGGAATTGAGGTGTCCAATATCTTTGCAGCTTATGCATGACCCAGTCATAATTGATTCTGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTCGACGACGGTCATAAAACCTGCCCAAAGACTCAACAGAAGCTCTCCCATCTTTCCTTGACACCCAATTACTCAGTCAAGGGTCTCATTGCTAATTGGTGTGAACATAATGGAGTTTCCATTCCTGGCGGTCCACCACAGTCACTTGACCTCAACTATTGGCGGCTTGCATTGTCTGATTGCGAGTCTGGAAATTCAAGATCTGTGAACAGTGTTGGTTCTTGCAAATTAAAGGGAGTCAAGGTAGTTCCTTTGGAGGAAAGTGGAACTATCAAGATAGCTGAAGAAAATGAAGCAGTTGATAATATGTACCTGCAGGAGTCATCAGATGTCATTACATTAGAAAGTTGTGTAAATTTCATGGCTGTATTGACTGAAGGAGGAGACTTGAAGAAAAAGTGTAAGGTTGTGGAGCAGATAAGGCTCTTACTGAAGGATGATGACGAGGCTCGAATTTTGATGGGAGCCAATGGGTTTGCTGAAGCACTTATGGAATTCCTTACTTTGGCCCTTATTGAAGAAAATGCTGATGCTCAGGAAAGCGGAGCCATGGCCCTCTTCAATCTTTCTGTCAACAGTAACAGGAACAAGGAAGTGATGTTAGCAGCAGGTGTTATCTCATTGTTGGAAGATATGATTTTGAAGCCCAATTTACAAGGACCTGCAACAGCCCTATATTTGAACCTTTCCAGCCTAGAAGATGCCAAGCCTATCATTAGCTCGAGTACCGCTGTTCCTCTCTTGATTCAGCTGCTTACTAGTGATGCTGAATCCCAAATCAGGCTTGATGCACTTCATTCCCTCTATAACCTCTCTACCGTGCGCTCCATTATCCCCATTCTTCTTTCTGCTGGCCTTGTGGGTGGACTTCAATTTTTGCTTACAGATCCTGGTGATAATGTGTGGATTGAGACTTCCTTAGCTGTCTTTTTAAATTTAGCTTCAACCCAGATGGGGATAGATGAAATAACTTTGGCCCCAGAACTTATTAGTGGGGTGGCTGCAATAGTGGATTCTGGCGAACCAGCTGAGCAAGAGCAAGCTGTCTCGTGTTTGTTGATTTTGTGCAAAGGAAGTGAGAAATGCAGTCAAATGGTCTTACAGGAAGGGGTGATTCCTGGATTGGTGTCGATTACCGTAAATGGGACAACGAGAGGGAAAGTGAAAGCTCAGAAACTTCTGATGGTGTTTAGGGAGCAGAGGCAAAAAGATACCGATATTCATCAGCGTGTTGAAAGTAGTGGCACATCTGTGCCTGCTTCCGAACCAAAGCCGTTATGCAAATCCACATCGAGGAAAAAGATGGGGAGACCATTTAGCTTTTTTTCCAAGAGCAAAGGCTTTTCGCTCTACCAATGTTAA 2298 42.56 MEVPVIEEIFFAAADAKLHGEMYKKLAAVYCQVMSIFPSLEAARPRSKSGIRALCSLHVALEKTKNILQHCSESSKLYLAITGDAVLAKFEKAKGSLEESLRCVEDIVSQSIGYQIQQILNELKGTVFLLDPLEKQVGDDIIALLLQERKFDDSNGLNELEHFHQAATKLGITSSKAALTERRALKRLVERARSEEDKRKESIVAYLLHLMRKYSKLFRSELSDDNDSQGSSPCSPTVQSSLEDSGVTANGQAFEQQLSKLSSFNFKPTYGVSDQIPLPPEELRCPISLQLMHDPVIIDSGQTYERICIEKWFDDGHKTCPKTQQKLSHLSLTPNYSVKGLIANWCEHNGVSIPGGPPQSLDLNYWRLALSDCESGNSRSVNSVGSCKLKGVKVVPLEESGTIKIAEENEAVDNMYLQESSDVITLESCVNFMAVLTEGGDLKKKCKVVEQIRLLLKDDDEARILMGANGFAEALMEFLTLALIEENADAQESGAMALFNLSVNSNRNKEVMLAAGVISLLEDMILKPNLQGPATALYLNLSSLEDAKPIISSSTAVPLLIQLLTSDAESQIRLDALHSLYNLSTVRSIIPILLSAGLVGGLQFLLTDPGDNVWIETSLAVFLNLASTQMGIDEITLAPELISGVAAIVDSGEPAEQEQAVSCLLILCKGSEKCSQMVLQEGVIPGLVSITVNGTTRGKVKAQKLLMVFREQRQKDTDIHQRVESSGTSVPASEPKPLCKSTSRKKMGRPFSFFSKSKGFSLYQC 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58839570 58842828 - evm.model.ptg000006l.71 HCH1g1136 539155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1136 765 SUPERFAMILY RING/U-box 270 354 - -
HCH1g1136 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
HCH1g1136 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g1136 765 SMART arm_5 544 585 IPR000225 GO:0005515(InterPro)
HCH1g1136 765 SMART arm_5 459 503 IPR000225 GO:0005515(InterPro)
HCH1g1136 765 SMART arm_5 505 543 IPR000225 GO:0005515(InterPro)
HCH1g1136 765 Pfam U-box domain 280 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g1136 765 MobiDBLite consensus disorder prediction 224 246 - -
HCH1g1136 765 CDD RING-Ubox_PUB 280 332 IPR045210 -
HCH1g1136 765 Gene3D - 550 710 IPR011989 -
HCH1g1136 765 Coils Coil 175 195 - -
HCH1g1136 765 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g1136 765 MobiDBLite consensus disorder prediction 717 745 - -
HCH1g1136 765 MobiDBLite consensus disorder prediction 222 246 - -
HCH1g1136 765 PANTHER U BOX DOMAIN-CONTAINING 23 713 - -
HCH1g1136 765 SUPERFAMILY ARM repeat 439 692 IPR016024 -
HCH1g1136 765 Gene3D - 426 549 IPR011989 -
HCH1g1136 765 FunFam RING-type E3 ubiquitin transferase 278 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1136 HCH-Chr1:58839570 HCH3g1349 HCH-Chr3:51169913 5.90E-35 dispersed
HCH1g1136 HCH-Chr1:58839570 HCH4g0103 HCH-Chr4:549611 5.30E-286 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1136 - - - 0.0