Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1137 ATGGTGTTTATAATGGGAGAGAAGAATCGTCATCATCTTCTTCTCCTCATTCTCAAATCCATCTTCATTTTCCACTTCCCATTCCTCGTTTCCTCCCTCTCACCAGACGGTCTCTCTCTCCTCTCTCTCAAATCCGCCGTCGACCAATCCTCCGACAACTTCATTTTCTCCGACTGGAACGAAAACGACACCACCCCTTGTCACTGGTCCGGCATTTCCTGCATGAACGTCTCCGGCAACCCACGTGTCGTCGGAATTGCTCTCTCCGGCAAAAATCTCCACGGCTACATTCCTTCCGAGCTCGGCAGCCTCATCTTTCTCCGACGATTAAATCTCCATAACAACAACTTCTACGGCTCGATTCCTTTACAACTCTTCAACGCCACGTCATTACACAGCCTCTTTCTCTATAACAACAATCTCTCTGGCTCTTTCCCTCCTTCTATCTGCAATATCCCACGGCTCCAAAACCTCGACCTTTCCAATAACTCTCTCACCGGAAAAATCTCGGAACATTTGAAGAATTGTAAGCAATTACAGCGTTTAATTCTCGCAAGAAATCAATTTAATGGAGAAATCCCATCTGGGGTCTGGTCAAAAATGGATAATTTACTTCAAATCGATCTCTCAGCCAACAATTTCAGTGGCCCAATTCCAGACGATTTAGGCCAAATTAAGAAACTTTCCGGCACTCTCAATTTATCCTTCAACCATTTATCTGGAAAAATCCCAAAAACGCTTGGAGATTTACCGGTTACCGTCAGCTTCGATTTTCGAAACAACAATTTAAGTGGAAGCATACCACAAACGGGGTCGTTTTCAAATCAAGGACCGACAGCTTTCCTTAACAATCCAATGCTGTGTGGTTTTCCACTTCAAAAATCATGTCAGAACTCAGAAGAAAGCTCAAGAGAAAATCCCGATTCAAGGGAAGTCCACGTCAGCACAAGAAAAGGCTTAAGTGCTGGATTAATCATTCTTATATCAGCTGCTGACGCAGCAGGAGTTGCATTCATTGGATTGGTGATAGTTTATATATATTGGAGAAAGAAAGATAATTCCAATGGCTGTAGTTGTACGGCAAAAGGGAAATTTGGTGGGAATCAGAAGTCAAATATTTGTTCATTTCCTTGCATGAATAACAGTAATTCTAAGAGTGAAGAATCAGAAATGGAAGAAGAAGAAAATAGTGATAGAAGTAGATCAGGAGGGGAAGGGGGGCTGGTGGCTGTGGATAAAGGATTTAATTTTGAATTGGATGAGTTACTGAGAGCCTCAGCTTACGTTCTGGGAAAGAGTGGATTGGGAATTGTGTATAAAGTGGTGCTCGGAAATGGGATTCCGGTGGCGGTGAGGAGATTAGGGGAGGGAGGAGAACAGAGATATAAGGAATTTGCGGCGGAGGTTTTGGCAATTGGGAAAGTGAAGCATCCTAATGTTGTCAAATTGAGAGCTTATTATTGGGCGCCTGATGAAAAGCTTCTTATTAGTGATTTTATCTCTAATGGAAACTTGGCCTCTGCACTTCGAGGAAAAAATGGTCAACCATCTTCAAGCCTTTTATGGTCAACGAGACTAAGAATTGCAAAAGGAACAGCTAGAGGATTAGCCTATCTCCACGAATGCAGTCCAAGGAAATTTGTCCATGGAGATATTAAACCATCCAACATTCTTCTCGACAACGAATTCCAACCCCACATCTCCGATTTCGGCCTCAACCGCTTAATTAGCATCACCGGCAATAATCCTTCTTCCGGCGGTCTTATTGGCGGAGCTTTTCCTTACCTTAAATCCGTACAAACTGACCGTACTAACAATTATTGCTCACCGGAGGCTCGTATTCCCGGAGCTAGACCGACCCAAAAATGGGATGTTTATTCATTTGGTGTCGTGATTTTGGAACTGCTCACCGGGAAGTCGCCGGAGCTTTCTCCAAACACGTCAACTTCTTTGGAAATTCCGGATTTGGTGAGGTGGGTTAAGAAGGGATTTGAAGAAGAAAAGCCTTTGTCGGATTTGGTGGATCCAATGTTGCTTCAAGAAGTTCATGCTAAGAAAGAGGTGCTTGCTGTGTTTCATTTGGCTCTTGCTTGCACTGAAAGTGACCCTGAAATTCGTCCTCGAATGAAGATGGTGTCTGAGAATTTTGATCGGATTTGA 2160 43.47 MVFIMGEKNRHHLLLLILKSIFIFHFPFLVSSLSPDGLSLLSLKSAVDQSSDNFIFSDWNENDTTPCHWSGISCMNVSGNPRVVGIALSGKNLHGYIPSELGSLIFLRRLNLHNNNFYGSIPLQLFNATSLHSLFLYNNNLSGSFPPSICNIPRLQNLDLSNNSLTGKISEHLKNCKQLQRLILARNQFNGEIPSGVWSKMDNLLQIDLSANNFSGPIPDDLGQIKKLSGTLNLSFNHLSGKIPKTLGDLPVTVSFDFRNNNLSGSIPQTGSFSNQGPTAFLNNPMLCGFPLQKSCQNSEESSRENPDSREVHVSTRKGLSAGLIILISAADAAGVAFIGLVIVYIYWRKKDNSNGCSCTAKGKFGGNQKSNICSFPCMNNSNSKSEESEMEEEENSDRSRSGGEGGLVAVDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFAAEVLAIGKVKHPNVVKLRAYYWAPDEKLLISDFISNGNLASALRGKNGQPSSSLLWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNEFQPHISDFGLNRLISITGNNPSSGGLIGGAFPYLKSVQTDRTNNYCSPEARIPGARPTQKWDVYSFGVVILELLTGKSPELSPNTSTSLEIPDLVRWVKKGFEEEKPLSDLVDPMLLQEVHAKKEVLAVFHLALACTESDPEIRPRMKMVSENFDRI 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58862562 58865758 + evm.model.ptg000006l.70 HCH1g1137 539156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1137 719 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 33 199 - -
HCH1g1137 719 Pfam Protein kinase domain 429 656 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g1137 719 MobiDBLite consensus disorder prediction 382 405 - -
HCH1g1137 719 FunFam Leucine-rich repeat receptor-like protein kinase 407 499 - -
HCH1g1137 719 SMART serkin_6 428 719 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g1137 719 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
HCH1g1137 719 CDD STKc_IRAK 430 719 - -
HCH1g1137 719 Pfam Leucine rich repeat 153 214 IPR001611 GO:0005515(InterPro)
HCH1g1137 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g1137 719 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 176 716 IPR046959 -
HCH1g1137 719 ProSiteProfiles Protein kinase domain profile. 424 719 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g1137 719 FunFam Os07g0541700 protein 507 588 - -
HCH1g1137 719 Pfam Leucine Rich Repeat 107 126 IPR001611 GO:0005515(InterPro)
HCH1g1137 719 Pfam Leucine Rich Repeat 231 250 IPR001611 GO:0005515(InterPro)
HCH1g1137 719 Pfam Leucine Rich Repeat 130 151 IPR001611 GO:0005515(InterPro)
HCH1g1137 719 Gene3D Transferase(Phosphotransferase) domain 1 500 719 - -
HCH1g1137 719 Gene3D Ribonuclease Inhibitor 35 197 IPR032675 -
HCH1g1137 719 Gene3D Phosphorylase Kinase; domain 1 413 499 - -
HCH1g1137 719 SUPERFAMILY L domain-like 38 293 - -
HCH1g1137 719 SUPERFAMILY Protein kinase-like (PK-like) 429 713 IPR011009 -
HCH1g1137 719 Gene3D Ribonuclease Inhibitor 199 294 IPR032675 -
HCH1g1137 719 FunFam Leucine-rich repeat receptor-like protein kinase 203 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1291 HCH-Chr10:45366271 HCH1g1137 HCH-Chr1:58862562 7.90E-106 dispersed
HCH1g1137 HCH-Chr1:58862562 HCH9g1129 HCH-Chr9:14515102 1.50E-93 dispersed
HCH1g1137 HCH-Chr1:58862562 HCH1g0742 HCH-Chr1:56205829 4.80E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81302 PF00069 Pkinase 6.60E-31 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1137 - - - 0.0