Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g1142 | ATGAAACTCTTCATTTTCCTCACTCTCTCACTCCTATTTTCCTCATCAATTTTCCCTTTCTCTCTCCTAAACTTTTTGATAATTTTCTCCCTCCTTGCCTTTTTCCTTAATTATTGGCTGATCCCTGGAGGCTTTGCATGGAGAAATCACCACAAAAACTCACCAAACCTAGTTGGTCCATTTGGTTGGCCCATATTAGGAACCTTACCTCACATGGGGTCTCTTTCTCATCGTAAATTAGCAGCCATTGCTCTATCTCTCAAAGCCACAAGGCTCATGTCCTTCAGTTTGGGTTCCAATAGAGTCATTATAAGCAGCCACCCTGATACTGCAAAGGAAATCCTCTGTGGGTCCTCATTTTCAGACCGTCCCATTAAGGAATCAGCTCGTTTGTTAATGTTTGAACGTGCCATTGGCTTTGCTTCATACGGTACCTATTGGCGCCACCTTCGGAGAATCTCGGCCCACCATATGTTCTCGCCGAGGCGAATCTCCGGCCTCGAAGCGCTTCGGCAGGACGTCGCGGACGAAATGTCGGAGCGAGTGTGGAGGAGCATGGAGGTGGATGGGGTGGTGGATTTGAGAGAGATTTTGCAAAAGTGTTCGTTGAGGAATATAATAGAGAGTGTGTTTGGAAGTGACTTAGAAATTATTAGGAAAGAGAAGTTGGAAATTATGGTGAGGGAAGGGTATGAATTGATAGGGAAATTTAATTGGGAAGATTATTTTGGTTTTAGGTTTTTGGATTTTAATGGAGTGAAGAGAAAGTGTCATGAGTTGGCGGGTAATGTCAATATCTTGGTTGGTAAGATTGTTGAAGAAAGAAGAAGTGATGATCAGCTTATAAATGAAGGAAATGACTTTCTTAGTGCTCTATTGTCATTGCCAAAGGAGGATCAATTAAGTGATTCAGATATGGTAGCTGTTTTATGGGAAATGATATTTCGTGGCACCGACACTATCGCCATCCTTCTCGAATGGATAATGGCCAGAATGATATTACATCCAGAAATCCAAACCAAAGCTCAAATGGAGATCGACACGTGCGTTGGCAGCAACCGGCACGTGCAAGGTTCCGACATTCCAAATCTTCCTTATCTCCAAGCCATTGTCAAAGAAGTTCTTCGCTTACACCCTCCAGGCCCATTACTCTCATGGGCCCGTCTCGCTATTCATGATGTCCACGTGGACAAGATCTTTATTCCAGCTGGCACCACCGCAATGGTCAATATGTGGGCCATAACCCACGACCCATCCATCTGGAAAGATCCACGGGCCTTCCGGCCAGAACGATTCATCGAAGAGGACGTGTCGGTTATGGGGTCGGATCTGAGGTTGGCTCCATTCGGGTCGGGTAGGAGGGTTTGCCCGGGAAAGAGCTTGGGTTTAGTCACAGTGCAGCTCTGGCTAGCTAGGCTTCTTCATGGGTACAGATGGGCCCCACGTTCAGATTCAGAAAAAACAGTGGATTTATCAGAATGTTTGAAGTTGTCTCTTGAAATGAAGAATCCATTGAATTGTTGTGTGGTTCGTCGTTAA | 1539 | 45.16 | MKLFIFLTLSLLFSSSIFPFSLLNFLIIFSLLAFFLNYWLIPGGFAWRNHHKNSPNLVGPFGWPILGTLPHMGSLSHRKLAAIALSLKATRLMSFSLGSNRVIISSHPDTAKEILCGSSFSDRPIKESARLLMFERAIGFASYGTYWRHLRRISAHHMFSPRRISGLEALRQDVADEMSERVWRSMEVDGVVDLREILQKCSLRNIIESVFGSDLEIIRKEKLEIMVREGYELIGKFNWEDYFGFRFLDFNGVKRKCHELAGNVNILVGKIVEERRSDDQLINEGNDFLSALLSLPKEDQLSDSDMVAVLWEMIFRGTDTIAILLEWIMARMILHPEIQTKAQMEIDTCVGSNRHVQGSDIPNLPYLQAIVKEVLRLHPPGPLLSWARLAIHDVHVDKIFIPAGTTAMVNMWAITHDPSIWKDPRAFRPERFIEEDVSVMGSDLRLAPFGSGRRVCPGKSLGLVTVQLWLARLLHGYRWAPRSDSEKTVDLSECLKLSLEMKNPLNCCVVRR | 512 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 58889835 | 58892405 | + | evm.model.ptg000006l.65 | HCH1g1142 | 539161 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g1142 | 512 | Pfam | Cytochrome P450 | 59 | 490 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | FunFam | Cytochrome P450 78A5 | 49 | 512 | - | - | |
| HCH1g1142 | 512 | PANTHER | CYTOCHROME P450 78A7-RELATED | 15 | 508 | IPR051996 | - | |
| HCH1g1142 | 512 | PRINTS | P450 superfamily signature | 316 | 333 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | PRINTS | P450 superfamily signature | 456 | 467 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | PRINTS | P450 superfamily signature | 447 | 456 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | PRINTS | P450 superfamily signature | 369 | 380 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | SUPERFAMILY | Cytochrome P450 | 59 | 512 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | PRINTS | E-class P450 group I signature | 325 | 351 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | PRINTS | E-class P450 group I signature | 410 | 434 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | PRINTS | E-class P450 group I signature | 446 | 456 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | PRINTS | E-class P450 group I signature | 456 | 479 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | PRINTS | E-class P450 group I signature | 305 | 322 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | PRINTS | E-class P450 group I signature | 368 | 386 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g1142 | 512 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 449 | 458 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH1g1142 | 512 | Gene3D | Cytochrome P450 | 46 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g1142 | HCH-Chr1:58889835 | HCH4g0157 | HCH-Chr4:876781 | 1.20E-151 | dispersed | |
| HCH1g1142 | HCH-Chr1:58889835 | HCH3g0127 | HCH-Chr3:811990 | 8.50E-155 | transposed |
Pathway information