Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1146 ATGGCTTCTGCTTTTGCTTCTTCTGCTATTGCAACTGCGGCAATCTCTTCATCCAGTTCTCAGAAGAATGGGGCACCCAAGGCTTCTTTCCTAAGTGGGAAGAACCTGAGGCTGAGAAAGTACACAGCCGCCGCCGCCGCCACTCCACGATCAGCTACCATATGCGCTGCGGCGGACCCCAACCGACCTCTTTGGTTCCCCGGCAGCGTCCCTCCTCCATGGCTCGACGGTAGCCTCCCCGGCGACTTCGGTTTTGATCCTCTTGGTCTTTCATCTGATCCCGAAAGTCTAAGATGGAACACGCAAGCGGAGCTAGTTCACTGCCGATGGGCAATGTTGGGAGCTGCAGGAATTTTTATCCCGGAATTCTTGACGAAGATCGGAATTCTAAACACACCTTCTTGGTACTCCGCCGGAGAATTAGAATACTTCACCGACACAACCACCCTCTTCATCGTGGAGCTCATTTTCATCGGCTGGGCCGAGGGTAGACGGTGGGCCGACATCCTTAAACCGGGTTCCGTGAACACCGACCCAATCTTCCCTAACAACAAGCTCACCGGAACCGATGTCGGGTACCCGGGTGGGCTTTGGTTCGACCCACTCGGATGGGGAACCGGTTCACCGGAAAAGCTAAAGGAATTGAGAACAAAGGAAATTAAAAATGGGAGATTGGCTATGTTGGCTGTGATGGGGGCTTGGTTCCAACACATTTACACCGGCACCGGACCCATCGATAACCTCTTCGCCCATCTTGCTGATCCCGGCCACGCTACCGTTTTCGCCGCTTTTACACCCAAGTGA 804 53.98 MASAFASSAIATAAISSSSSQKNGAPKASFLSGKNLRLRKYTAAAAATPRSATICAAADPNRPLWFPGSVPPPWLDGSLPGDFGFDPLGLSSDPESLRWNTQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58915362 58916511 + evm.model.ptg000006l.61 HCH1g1146 539165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1146 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 13 262 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
HCH1g1146 267 Pfam Chlorophyll A-B binding protein 71 237 IPR022796 -
HCH1g1146 267 Gene3D Chlorophyll a/b binding protein domain 72 257 - -
HCH1g1146 267 SUPERFAMILY Chlorophyll a-b binding protein 57 265 - -
HCH1g1146 267 FunFam Chlorophyll a-b binding protein, chloroplastic 72 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1146 HCH-Chr1:58915362 HCH8g0587 HCH-Chr8:42695706 7.80E-83 dispersed
HCH1g1146 HCH-Chr1:58915362 HCH3g0069 HCH-Chr3:401129 1.50E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1146 K08908 - csv:101214055 479.944