Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1156 ATGGGAACTTGCATCAAGAATTTGGTTGAAGATGATGAACACATTTTTCGCAGCCAACTTCCTGCTGTCCGAGTTCCTGATGATATCACTTTGCCAGAATTTGTACTTCAGAATGCTGAATTGTATGCAGAAAATGTGGCATTTGTGGAGGCTGTGAGCGGAAAGCAATTCACTTATCGTGAAGTTGTTAGAGATACGAAGAGATTCGCTAAGGCCTTGAGCTCTCTGGGGTTGAGGAAGGGGCAGGTGGTTATAGTTGTTTTACCAAATGTTGCAGAATATGCTATTATTGCTCTAGGGATAATGACTGCTGGGGGTGTGTTTTCTGGTGTGAATCCAGCAGCTCACATATCAGAAATCAAAAAACAGGTGGAGGTTGCAGGCGCCAAGCTTGTCGTTACCAACAGTCCAAACTTTGAAAAGGTGAAGGCACTAAAGCTACCAGTGGTATTATTGGGTGACGAGCTGATTGAAGGTTCGATGAACTGGTACAAACTGCTCGAAGCAGCAGACCGTGCAGGCACCAATTATGTCAAAGAAGATATCAAACAGACTGATTTATGTGCCCTTCCATTCTCATCAGGCACCACAGGGGTTTCCAAAGGTGTAATGCTAACTCACCGAAATCTAGTCGCAAACTTGTGTTCTACTCTCTCTGGTGTACCGCCAGAAATGGTGGGCAAGGTCACAACATTAGGCCTCATTCCATTTTTTCATATTTACGGGATTACTGGAATATGTTGCGCCACACTTAGAAACAAGGGAAAAGTTGTGGTGATGGGAAGATTTGATCTCAGGATATTCATTAATGCATTGATAACACAGGAGGTCACATTTGCTCCTATTGTTCCTCCCATCATCTTGGCTTTGGTTAAGAATCCTATAGTGGAAGAATTTGATCTTAGCACTCTCAAACTTGAGGCTATCATGACTGCAGCCGCTCCACTCGCACCAGAACTTCAAACTGCCTTTGAAAATAAGTTCCCGGGTGTCGATGTTCAAGAGGCATATGGACTAACCGAGCACAGTTGCATCACACTCAACTATGGAAGTATAGGTAGAGATAATCCCACTGCAAGGAAAAACACCGTTGGCCGCATTCTTCCTAATTTAGAAGTCAAATTCATCGACCCCGACAGTGGTAGGTCTCTGCCGAAGAATACTCCTGGCGAAATCTGTGTAAGAAGCCAGTGTGTTATGCAAGGTTACTACAAAAATGAAGAGGAGACTTCAAGGACCATAGATAAGCAAGGCTGGCTACACACCGGTGACATTGGATATATCGATGAGGAGGGCGATGTCTTTATTGTGGATCGTATTAAAGAGTTGATTAAATACAAAGGCTTTCAAGTTGCTCCAGCTGAGTTAGAGGCAATCCTTTTTAGTCATCCCTCCATTGAAGATGCAGCTGTTGTGCCGCTGCCAGATGAAGAAGCCGGTGAGATCCCAGCAGCAAGCATCGTAATGGCTCCGAATTCGAAAGAAACCGAAGAAGAAATAATCAAGTACGTAGGCTCGAATGTTGCACACTACAAGAAAGTCAGGGTGGTACATTTTGTGGATTCCATCCCAAAATCACCTTCTGGGAAAGTGATGAGAAGATTGATCAGAGAGAAGATGATCGAAAAGATTCGAAACGAGACTACTTGA 1650 43.88 MGTCIKNLVEDDEHIFRSQLPAVRVPDDITLPEFVLQNAELYAENVAFVEAVSGKQFTYREVVRDTKRFAKALSSLGLRKGQVVIVVLPNVAEYAIIALGIMTAGGVFSGVNPAAHISEIKKQVEVAGAKLVVTNSPNFEKVKALKLPVVLLGDELIEGSMNWYKLLEAADRAGTNYVKEDIKQTDLCALPFSSGTTGVSKGVMLTHRNLVANLCSTLSGVPPEMVGKVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFDLRIFINALITQEVTFAPIVPPIILALVKNPIVEEFDLSTLKLEAIMTAAAPLAPELQTAFENKFPGVDVQEAYGLTEHSCITLNYGSIGRDNPTARKNTVGRILPNLEVKFIDPDSGRSLPKNTPGEICVRSQCVMQGYYKNEEETSRTIDKQGWLHTGDIGYIDEEGDVFIVDRIKELIKYKGFQVAPAELEAILFSHPSIEDAAVVPLPDEEAGEIPAASIVMAPNSKETEEEIIKYVGSNVAHYKKVRVVHFVDSIPKSPSGKVMRRLIREKMIEKIRNETT 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58955150 58957292 - evm.model.ptg000006l.51 HCH1g1156 539175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1156 549 CDD 4CL 25 534 - -
HCH1g1156 549 Gene3D - 13 441 IPR042099 -
HCH1g1156 549 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
HCH1g1156 549 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
HCH1g1156 549 Gene3D - 442 544 IPR045851 -
HCH1g1156 549 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 536 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
HCH1g1156 549 Pfam AMP-binding enzyme 38 404 IPR000873 -
HCH1g1156 549 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
HCH1g1156 549 SUPERFAMILY Acetyl-CoA synthetase-like 21 543 - -
HCH1g1156 549 FunFam 4-coumarate--CoA ligase 2 442 543 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1156 HCH-Chr1:58955150 HCH2g0350 HCH-Chr2:45029420 3.30E-112 dispersed
HCH1g1156 HCH-Chr1:58955150 HCH6g0312 HCH-Chr6:4851461 2.20E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1156 K01904 - csv:101220731 946.036