Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1175 ATGGAGACTCACTTTCATCACAATCTCTTTGAGCGGCGACCCATCCTCAAGAACAAGGCTCCCGCTGTCAAATGGTTCAAAGAATGGGTTCCTCAAGATGTTGTTGCTACTGGAGGAAAGTGTTTTCTTTTCAAATGGGTTACAGAGGATACCTTGAAGGCATTACAAGAGAAGGCAAAACAGCCAGAGGCACCAGAACCTGAGCCAGAACCAACCACTGAAGTTCTTTTCCTATGTAGCTATGACGGCTGTGGGAAAACATTTATCGATGCTGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGACAATATGTTTGTCATTATGAGGGTTGTGGAAAGAAATTTTTAGATAGTTCAAAGTTGAAAAGACACTTTCTTATTCATACTGGTGAAAGAGATTTTGTTTGCCCTCATGAAGGCTGTGGAAAGGCATTTTCCCTGGATTTCAACTTGAGATCGCACATGAAAACGCATTCTCAAGAAAACTATCATATCTGTCCATATGCTGATTGTGGAAAGAGATTTGCGCATGAGTACAAGTTGAAGAACCATATTACGTCTCACCATGAAAAGAATATGACACCTGATGTGACCAAATATACAACACCACCTTCTGAGAAGCAAACGAAGGTTTCTAAACCTTCTGGAGGAACTTATGGTTCGGCATCGTCTGAACGCCCGTATGCTTGTCCTTATGAAGGGTGTGAAAAAGCTTATATCCACGAATACAAGCTTAAACTGCATTTGAGAAGAGAGCATCCTGGACATTTGGTAGAAGACAATGGCAATACTCCAAATAATGGAGAAAATGAGATAGAAGCCAGTGACCAAGATGGGTATGTAGGAAAACGTGTAAATGTGAAAAACCAGAAACGGATGAAGGCTAAACCAAACTTGAAGTTGCCACCTTCAAAAATAGCACAGAGAAAAGGTTCAACTCAATCTCCTGCTCCAATGAACACGGTTAAAAAACCGTGGCCAGTTAAAGAAGAGAGGTACGAGGAAGAGGATAGTGAAGAAACAGAGGAGGACCGTGAGAACGTGGAGGAAGGTTGGAGATATGCAGAAAATAACGAGGATGATGATGATGATGAGGAAACCGAGTATGAAGACTAA 1122 41.8 METHFHHNLFERRPILKNKAPAVKWFKEWVPQDVVATGGKCFLFKWVTEDTLKALQEKAKQPEAPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYADCGKRFAHEYKLKNHITSHHEKNMTPDVTKYTTPPSEKQTKVSKPSGGTYGSASSERPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNTPNNGENEIEASDQDGYVGKRVNVKNQKRMKAKPNLKLPPSKIAQRKGSTQSPAPMNTVKKPWPVKEERYEEEDSEETEEDRENVEEGWRYAENNEDDDDDEETEYED 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59064972 59067725 - evm.model.ptg000006l.32 HCH1g1175 539194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1175 373 Gene3D Classic Zinc Finger 162 191 - -
HCH1g1175 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
HCH1g1175 373 FunFam Zinc finger protein 410 134 161 - -
HCH1g1175 373 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
HCH1g1175 373 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
HCH1g1175 373 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
HCH1g1175 373 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
HCH1g1175 373 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
HCH1g1175 373 Gene3D Classic Zinc Finger 200 272 - -
HCH1g1175 373 MobiDBLite consensus disorder prediction 257 373 - -
HCH1g1175 373 FunFam zinc finger transcription factor YY1 163 194 - -
HCH1g1175 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
HCH1g1175 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
HCH1g1175 373 MobiDBLite consensus disorder prediction 198 224 - -
HCH1g1175 373 SMART c2h2final6 136 160 IPR013087 -
HCH1g1175 373 SMART c2h2final6 77 101 IPR013087 -
HCH1g1175 373 SMART c2h2final6 166 190 IPR013087 -
HCH1g1175 373 SMART c2h2final6 230 255 IPR013087 -
HCH1g1175 373 SMART c2h2final6 106 130 IPR013087 -
HCH1g1175 373 Gene3D Classic Zinc Finger 77 102 - -
HCH1g1175 373 Gene3D Classic Zinc Finger 134 161 - -
HCH1g1175 373 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 10 369 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
HCH1g1175 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
HCH1g1175 373 FunFam Putative zinc finger protein 143 103 133 - -
HCH1g1175 373 FunFam zinc finger transcription factor YY1 77 102 - -
HCH1g1175 373 MobiDBLite consensus disorder prediction 357 373 - -
HCH1g1175 373 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
HCH1g1175 373 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
HCH1g1175 373 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
HCH1g1175 373 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
HCH1g1175 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
HCH1g1175 373 Gene3D Classic Zinc Finger 103 133 - -
HCH1g1175 373 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
HCH1g1175 373 ProSitePatterns Zinc finger C2H2 type domain signature. 232 255 IPR013087 -
HCH1g1175 373 SUPERFAMILY beta-beta-alpha zinc fingers 225 253 IPR036236 -
HCH1g1175 373 MobiDBLite consensus disorder prediction 191 228 - -
HCH1g1175 373 FunFam Zinc finger transcription factor YY1 205 272 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33119 PF00096 zf-C2H2 0.0046 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1175 - - - 0.0