Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1177 ATGGAACTTACAGATATGCAGCAGACCACTCCTCAACACCATCACCCACAACAAAAGCAAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTGCTCAACTTCATCATGTGGTCCCTTTTGATGGAAGATCATCTTCGTCTCCTCAAGGGCCCTTCATGGGCTCCATCTCCATCCAACCTTCTTCTTCTTCTTCTTCTTCTAATACAACAACTACCACTGCTTCTGCAACCCCACTTCCTCACCTCCTCATCTCCTCCAGATCCGATCCCGACAACCCAAACCCATCTCCTCGATCCACACCTCTTCTTGATTCCGTCAATAATAACAACCAATTATCGGTCACCACCACCACCCCCTCTAACGCAGTCAAACGATCCACCAAAGATCGTCACACCAAAGTGGACGGCCGAGGCCGTCGTATCCGGATGCCCGCCACTTGCGCCGCTAGGGTTTTCCAATTAACCAGGGAATTGGGTCATAAGTCCGACGGCGAGACAATTGAGTGGCTACTGCAGCAAGCGGAGCCAGCGATCATCGCCGCTACCGGAACCGGTACAATTCCGGCCAATTTCTCATCGCTCAATATCTCGATTCGGAGTAGCGGAACGACGCTATCGGCACCGCCTTCGAAATCTGCACCTCATGCGTTTCATGGAGCTTTAGCTTTAGCTCATCATCCACAAAGCTATGAGGAAGGGTTTGCACATGCTGCTTTGTTAGGGTTTCACCATCACCACCATCAACAGCAGCAACAACATCATCATCAGCTCAATTTGATGACAGCTGATCAAATAGTAGAAGCCCTTCCGAGTGGTGGAACTGGAACTGGAGGAGAATCGAGTGAAAATTATATGAGAAAAAGGTTTAGAGAAGATCTGTTTAAAGAAGATACACAATCTCAAGGAGAGAGCAGTGGTGGTGGTGGTGGATCTCCTAAAGCAATTAAGAGTGATTTACAATTACATAAGCAGCAGCAGCAGCAGGCACAGGCAGGATCTTCAAGCCTGCTTAGGCCTTCTAATATAATGCCAGCGACAGCTATGTGGGCAGTGGCTCCGGCCCAGAATAGCGGAGCCAGCAATACATTTTGGATGTTACCAGTTACAACAGCTGCTACTTCAGGTGGAACAACTTCTGGGGCCGGGGCCGGGGCCGGTGGTGGCAGTGGTCCCTCTGAAGCTCAAATGTGGCCGTTTTCGACGGCTGTCCCGGCGAGTGCGAATACATTACAAGCGCCGTTACATTTCATGCCTAGATTTAACATTCCGGGTAGTTTAGAATTTCAAGCAGGTGGGGGAAGTGGAAGTGGAAGAGCGAGTCAATTACAATTGGGTTCTATGCTAATGCAGCAGCAGCAGCAACCCACTCAGCATTTGGGGCTTGGAGTATCAGAAACTAATTTGGGAGTTTTGGCGGCACTGAATGCCTATTCAAGAGGAAGTTTAAATATGAATATGAATATGAATTCAGAGCATCAGCAAAATCATGCATTGGATCAACAACAGCAGCAGCAGCATCATTCAAATCCACCACAGACTACTACTGATAGTGGGGACGAAGATCCCAACAATTCCCAATAA 1584 48.74 MELTDMQQTTPQHHHPQQKQTPPPPPPPPPSSAQLHHVVPFDGRSSSSPQGPFMGSISIQPSSSSSSSNTTTTTASATPLPHLLISSRSDPDNPNPSPRSTPLLDSVNNNNQLSVTTTTPSNAVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGTTLSAPPSKSAPHAFHGALALAHHPQSYEEGFAHAALLGFHHHHHQQQQQHHHQLNLMTADQIVEALPSGGTGTGGESSENYMRKRFREDLFKEDTQSQGESSGGGGGSPKAIKSDLQLHKQQQQQAQAGSSSLLRPSNIMPATAMWAVAPAQNSGASNTFWMLPVTTAATSGGTTSGAGAGAGGGSGPSEAQMWPFSTAVPASANTLQAPLHFMPRFNIPGSLEFQAGGGSGSGRASQLQLGSMLMQQQQQPTQHLGLGVSETNLGVLAALNAYSRGSLNMNMNMNSEHQQNHALDQQQQQQHHSNPPQTTTDSGDEDPNNSQ 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59074558 59076141 + evm.model.ptg000006l.30 HCH1g1177 539196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1177 527 MobiDBLite consensus disorder prediction 1 16 - -
HCH1g1177 527 Pfam TCP family transcription factor 127 258 IPR017887 -
HCH1g1177 527 MobiDBLite consensus disorder prediction 319 339 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 125 141 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 378 397 - -
HCH1g1177 527 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 82 508 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH1g1177 527 ProSiteProfiles TCP domain profile. 128 182 IPR017887 -
HCH1g1177 527 MobiDBLite consensus disorder prediction 41 124 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 17 34 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 297 339 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 493 527 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 1 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1177 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0935 HCH-Chr1:57626817 HCH1g1177 HCH-Chr1:59074558 3.40E-37 dispersed
HCH1g1177 HCH-Chr1:59074558 HCH8g1306 HCH-Chr8:48103877 3.70E-36 dispersed
HCH1g1177 HCH-Chr1:59074558 HCH9g0048 HCH-Chr9:277479 4.80E-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0544 . 28 238 TCP Transcription Factor Family AT5G23280 57.8 2.0e-56 216.1
HCH10g1153 . 22 252 TCP Transcription Factor Family AT5G23280 54.5 2.4e-54 209.1
HCH13g1174 . 64 332 TCP Transcription Factor Family AT2G45680 55.0 3.5e-62 235.7
HCH1g0935 . 76 180 TCP Transcription Factor Family AT3G47620 85.0 1.9e-42 170.6
HCH3g0046 . 52 161 TCP Transcription Factor Family AT3G47620 79.3 1.9e-39 160.6
HCH1g1177 . 127 209 TCP Transcription Factor Family AT3G47620 89.2 2.6e-36 150.2
HCH9g0048 . 1 307 TCP Transcription Factor Family AT3G27010 56.5 1.9e-67 253.1
HCH1g0544 . 25 236 TCP Transcription Factor Family AT5G08330 60.9 3.3e-56 215.3
HCH10g1153 . 1 251 TCP Transcription Factor Family AT5G08330 51.9 2.1e-55 212.6
HCH8g1238 . 33 227 TCP Transcription Factor Family AT5G60970 51.3 2.5e-44 176.4
HCH9g0307 . 31 131 TCP Transcription Factor Family AT3G02150 75.7 2.0e-38 156.8
HCH6g0648 . 21 224 TCP Transcription Factor Family AT2G31070 51.4 1.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33120 PF03634 TCP 5.20E-39 No_clan HCH TF