Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1177 ATGGAACTTACAGATATGCAGCAGACCACTCCTCAACACCATCACCCACAACAAAAGCAAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTGCTCAACTTCATCATGTGGTCCCTTTTGATGGAAGATCATCTTCGTCTCCTCAAGGGCCCTTCATGGGCTCCATCTCCATCCAACCTTCTTCTTCTTCTTCTTCTTCTAATACAACAACTACCACTGCTTCTGCAACCCCACTTCCTCACCTCCTCATCTCCTCCAGATCCGATCCCGACAACCCAAACCCATCTCCTCGATCCACACCTCTTCTTGATTCCGTCAATAATAACAACCAATTATCGGTCACCACCACCACCCCCTCTAACGCAGTCAAACGATCCACCAAAGATCGTCACACCAAAGTGGACGGCCGAGGCCGTCGTATCCGGATGCCCGCCACTTGCGCCGCTAGGGTTTTCCAATTAACCAGGGAATTGGGTCATAAGTCCGACGGCGAGACAATTGAGTGGCTACTGCAGCAAGCGGAGCCAGCGATCATCGCCGCTACCGGAACCGGTACAATTCCGGCCAATTTCTCATCGCTCAATATCTCGATTCGGAGTAGCGGAACGACGCTATCGGCACCGCCTTCGAAATCTGCACCTCATGCGTTTCATGGAGCTTTAGCTTTAGCTCATCATCCACAAAGCTATGAGGAAGGGTTTGCACATGCTGCTTTGTTAGGGTTTCACCATCACCACCATCAACAGCAGCAACAACATCATCATCAGCTCAATTTGATGACAGCTGATCAAATAGTAGAAGCCCTTCCGAGTGGTGGAACTGGAACTGGAGGAGAATCGAGTGAAAATTATATGAGAAAAAGGTTTAGAGAAGATCTGTTTAAAGAAGATACACAATCTCAAGGAGAGAGCAGTGGTGGTGGTGGTGGATCTCCTAAAGCAATTAAGAGTGATTTACAATTACATAAGCAGCAGCAGCAGCAGGCACAGGCAGGATCTTCAAGCCTGCTTAGGCCTTCTAATATAATGCCAGCGACAGCTATGTGGGCAGTGGCTCCGGCCCAGAATAGCGGAGCCAGCAATACATTTTGGATGTTACCAGTTACAACAGCTGCTACTTCAGGTGGAACAACTTCTGGGGCCGGGGCCGGGGCCGGTGGTGGCAGTGGTCCCTCTGAAGCTCAAATGTGGCCGTTTTCGACGGCTGTCCCGGCGAGTGCGAATACATTACAAGCGCCGTTACATTTCATGCCTAGATTTAACATTCCGGGTAGTTTAGAATTTCAAGCAGGTGGGGGAAGTGGAAGTGGAAGAGCGAGTCAATTACAATTGGGTTCTATGCTAATGCAGCAGCAGCAGCAACCCACTCAGCATTTGGGGCTTGGAGTATCAGAAACTAATTTGGGAGTTTTGGCGGCACTGAATGCCTATTCAAGAGGAAGTTTAAATATGAATATGAATATGAATTCAGAGCATCAGCAAAATCATGCATTGGATCAACAACAGCAGCAGCAGCATCATTCAAATCCACCACAGACTACTACTGATAGTGGGGACGAAGATCCCAACAATTCCCAATAA 1584 48.74 MELTDMQQTTPQHHHPQQKQTPPPPPPPPPSSAQLHHVVPFDGRSSSSPQGPFMGSISIQPSSSSSSSNTTTTTASATPLPHLLISSRSDPDNPNPSPRSTPLLDSVNNNNQLSVTTTTPSNAVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGTTLSAPPSKSAPHAFHGALALAHHPQSYEEGFAHAALLGFHHHHHQQQQQHHHQLNLMTADQIVEALPSGGTGTGGESSENYMRKRFREDLFKEDTQSQGESSGGGGGSPKAIKSDLQLHKQQQQQAQAGSSSLLRPSNIMPATAMWAVAPAQNSGASNTFWMLPVTTAATSGGTTSGAGAGAGGGSGPSEAQMWPFSTAVPASANTLQAPLHFMPRFNIPGSLEFQAGGGSGSGRASQLQLGSMLMQQQQQPTQHLGLGVSETNLGVLAALNAYSRGSLNMNMNMNSEHQQNHALDQQQQQQHHSNPPQTTTDSGDEDPNNSQ 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59074558 59076141 + evm.model.ptg000006l.30 HCH1g1177 539196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1177 527 MobiDBLite consensus disorder prediction 1 16 - -
HCH1g1177 527 Pfam TCP family transcription factor 127 258 IPR017887 -
HCH1g1177 527 MobiDBLite consensus disorder prediction 319 339 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 125 141 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 378 397 - -
HCH1g1177 527 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 82 508 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH1g1177 527 ProSiteProfiles TCP domain profile. 128 182 IPR017887 -
HCH1g1177 527 MobiDBLite consensus disorder prediction 41 124 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 17 34 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 297 339 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 493 527 - -
HCH1g1177 527 MobiDBLite consensus disorder prediction 1 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0935 HCH-Chr1:57626817 HCH1g1177 HCH-Chr1:59074558 3.40E-37 dispersed
HCH1g1177 HCH-Chr1:59074558 HCH8g1306 HCH-Chr8:48103877 3.70E-36 dispersed
HCH1g1177 HCH-Chr1:59074558 HCH9g0048 HCH-Chr9:277479 4.80E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33120 PF03634 TCP 5.20E-39 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1177 - - - 0.0