Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g1177 | ATGGAACTTACAGATATGCAGCAGACCACTCCTCAACACCATCACCCACAACAAAAGCAAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTGCTCAACTTCATCATGTGGTCCCTTTTGATGGAAGATCATCTTCGTCTCCTCAAGGGCCCTTCATGGGCTCCATCTCCATCCAACCTTCTTCTTCTTCTTCTTCTTCTAATACAACAACTACCACTGCTTCTGCAACCCCACTTCCTCACCTCCTCATCTCCTCCAGATCCGATCCCGACAACCCAAACCCATCTCCTCGATCCACACCTCTTCTTGATTCCGTCAATAATAACAACCAATTATCGGTCACCACCACCACCCCCTCTAACGCAGTCAAACGATCCACCAAAGATCGTCACACCAAAGTGGACGGCCGAGGCCGTCGTATCCGGATGCCCGCCACTTGCGCCGCTAGGGTTTTCCAATTAACCAGGGAATTGGGTCATAAGTCCGACGGCGAGACAATTGAGTGGCTACTGCAGCAAGCGGAGCCAGCGATCATCGCCGCTACCGGAACCGGTACAATTCCGGCCAATTTCTCATCGCTCAATATCTCGATTCGGAGTAGCGGAACGACGCTATCGGCACCGCCTTCGAAATCTGCACCTCATGCGTTTCATGGAGCTTTAGCTTTAGCTCATCATCCACAAAGCTATGAGGAAGGGTTTGCACATGCTGCTTTGTTAGGGTTTCACCATCACCACCATCAACAGCAGCAACAACATCATCATCAGCTCAATTTGATGACAGCTGATCAAATAGTAGAAGCCCTTCCGAGTGGTGGAACTGGAACTGGAGGAGAATCGAGTGAAAATTATATGAGAAAAAGGTTTAGAGAAGATCTGTTTAAAGAAGATACACAATCTCAAGGAGAGAGCAGTGGTGGTGGTGGTGGATCTCCTAAAGCAATTAAGAGTGATTTACAATTACATAAGCAGCAGCAGCAGCAGGCACAGGCAGGATCTTCAAGCCTGCTTAGGCCTTCTAATATAATGCCAGCGACAGCTATGTGGGCAGTGGCTCCGGCCCAGAATAGCGGAGCCAGCAATACATTTTGGATGTTACCAGTTACAACAGCTGCTACTTCAGGTGGAACAACTTCTGGGGCCGGGGCCGGGGCCGGTGGTGGCAGTGGTCCCTCTGAAGCTCAAATGTGGCCGTTTTCGACGGCTGTCCCGGCGAGTGCGAATACATTACAAGCGCCGTTACATTTCATGCCTAGATTTAACATTCCGGGTAGTTTAGAATTTCAAGCAGGTGGGGGAAGTGGAAGTGGAAGAGCGAGTCAATTACAATTGGGTTCTATGCTAATGCAGCAGCAGCAGCAACCCACTCAGCATTTGGGGCTTGGAGTATCAGAAACTAATTTGGGAGTTTTGGCGGCACTGAATGCCTATTCAAGAGGAAGTTTAAATATGAATATGAATATGAATTCAGAGCATCAGCAAAATCATGCATTGGATCAACAACAGCAGCAGCAGCATCATTCAAATCCACCACAGACTACTACTGATAGTGGGGACGAAGATCCCAACAATTCCCAATAA | 1584 | 48.74 | MELTDMQQTTPQHHHPQQKQTPPPPPPPPPSSAQLHHVVPFDGRSSSSPQGPFMGSISIQPSSSSSSSNTTTTTASATPLPHLLISSRSDPDNPNPSPRSTPLLDSVNNNNQLSVTTTTPSNAVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGTTLSAPPSKSAPHAFHGALALAHHPQSYEEGFAHAALLGFHHHHHQQQQQHHHQLNLMTADQIVEALPSGGTGTGGESSENYMRKRFREDLFKEDTQSQGESSGGGGGSPKAIKSDLQLHKQQQQQAQAGSSSLLRPSNIMPATAMWAVAPAQNSGASNTFWMLPVTTAATSGGTTSGAGAGAGGGSGPSEAQMWPFSTAVPASANTLQAPLHFMPRFNIPGSLEFQAGGGSGSGRASQLQLGSMLMQQQQQPTQHLGLGVSETNLGVLAALNAYSRGSLNMNMNMNSEHQQNHALDQQQQQQHHSNPPQTTTDSGDEDPNNSQ | 527 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 59074558 | 59076141 | + | evm.model.ptg000006l.30 | HCH1g1177 | 539196 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g1177 | 527 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
HCH1g1177 | 527 | Pfam | TCP family transcription factor | 127 | 258 | IPR017887 | - | |
HCH1g1177 | 527 | MobiDBLite | consensus disorder prediction | 319 | 339 | - | - | |
HCH1g1177 | 527 | MobiDBLite | consensus disorder prediction | 125 | 141 | - | - | |
HCH1g1177 | 527 | MobiDBLite | consensus disorder prediction | 378 | 397 | - | - | |
HCH1g1177 | 527 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 82 | 508 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
HCH1g1177 | 527 | ProSiteProfiles | TCP domain profile. | 128 | 182 | IPR017887 | - | |
HCH1g1177 | 527 | MobiDBLite | consensus disorder prediction | 41 | 124 | - | - | |
HCH1g1177 | 527 | MobiDBLite | consensus disorder prediction | 17 | 34 | - | - | |
HCH1g1177 | 527 | MobiDBLite | consensus disorder prediction | 297 | 339 | - | - | |
HCH1g1177 | 527 | MobiDBLite | consensus disorder prediction | 493 | 527 | - | - | |
HCH1g1177 | 527 | MobiDBLite | consensus disorder prediction | 1 | 142 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0935 | HCH-Chr1:57626817 | HCH1g1177 | HCH-Chr1:59074558 | 3.40E-37 | dispersed | |
HCH1g1177 | HCH-Chr1:59074558 | HCH8g1306 | HCH-Chr8:48103877 | 3.70E-36 | dispersed | |
HCH1g1177 | HCH-Chr1:59074558 | HCH9g0048 | HCH-Chr9:277479 | 4.80E-28 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33120 | PF03634 | TCP | 5.20E-39 | No_clan | HCH | TF |
Pathway information
