Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1203 ATGGATATTTGGGTTCAGGTAGTGATGTTATGGTATGTTTGTGCGATCCTAGTAGGAGTCGGAGTAGGAGCTGATTCGACTTGGGGTGGATCTGAGTCTGAGAGGAAGAGTTTCGAGCAAATTCATGAGAGAGAGGATGCATTGCTTTCTTCTCTTCCCATATCTCCCACTCCCCTTATGGTACCCCTCACTCTTATTAACGCTGCTGCTTTTAAAGGAGCTGTCTGTTTGGATGGCACACTACCTGGTTATCATCTGCATCCTGGCTATGGATCGGGTTCAAACAGCTGGATTGTACATTTAGAGGGAGGGGGCTGGTGTAATACGATCAGGAATTGTGTTTTTCGCAAAACCACACGCCGTGGTTCATCAAAATATATGGAAGAGCAATTACCCTTCACGGGAATATTGAGCAACAAGGCTGAGGAAAATCCTGATTTCTTCAACTGGAACAGAGTCAAGCTACGTTATTGCGATGGTGCATCTTTTAGTGGAGACACTGAGAATGAGGCAGCACAACTTTATTTCCGGGGGCAACGTATATGGTTGACTGCTATGGAAGAGTTAATATCCAAAGGAATGAAAAATGCCAACCAGGCTCTCCTTTCTGGATGCTCTGCTGGGGGTCTAGCATCCATACTGCATTGTGATGAATTCCATGAATTATTTCCCAAAACGACTAAAGTGAAATGCTTAAGTGATGCAGGATTTTTTCTTGACTCCATTGACGTATCTGGTGGGCGCACCTTGAGAAATATGTTTGGAGGCGTGGTTAGATTACAGGAACTGCAGAAAAATCTTCCAAGAACTTGCATCAACCACCTGGATCCAACATCGTGCTTCTTTCCTCAGAATATAATAGCTGACGTCAAGACCCCACTGTTTCTTCTCAATGCAGCATACGATGCATGGCAGGTCCAAGATAGTTTGGCTCCACCATCTGCCGATCCTCACGGATCTTGGAAGGAATGCAAGTTGAACCATGCACATTGTAATTCATCTCAGATAAAATTTCTTCAAGACTTCAGAAATGAAATGTTGAATGCAGTAAAAGATTTCACGTCGTCCGATCAAAATGGCGTGTTCATAAATTCTTGTTTTGCTCATTGCCAGTCTGAGAGGCAAGACACATGGTTTGCAGATGATTCTCCTATTATTGGAAACCAGGCGATTGCAGTGTCAGTTGGGGAGTGGTACTTTGATAGAGCAAGTGTTAAAGCCATTGATTGTGCATACCCTTGTGACACAACCTGCCATAATTTGGTCTTCAACTGA 1275 43.76 MDIWVQVVMLWYVCAILVGVGVGADSTWGGSESERKSFEQIHEREDALLSSLPISPTPLMVPLTLINAAAFKGAVCLDGTLPGYHLHPGYGSGSNSWIVHLEGGGWCNTIRNCVFRKTTRRGSSKYMEEQLPFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDTENEAAQLYFRGQRIWLTAMEELISKGMKNANQALLSGCSAGGLASILHCDEFHELFPKTTKVKCLSDAGFFLDSIDVSGGRTLRNMFGGVVRLQELQKNLPRTCINHLDPTSCFFPQNIIADVKTPLFLLNAAYDAWQVQDSLAPPSADPHGSWKECKLNHAHCNSSQIKFLQDFRNEMLNAVKDFTSSDQNGVFINSCFAHCQSERQDTWFADDSPIIGNQAIAVSVGEWYFDRASVKAIDCAYPCDTTCHNLVFN 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59180259 59183026 - evm.model.ptg000006l.4 HCH1g1203 539222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1203 424 PANTHER NOTUM-RELATED 55 421 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
HCH1g1203 424 Pfam Pectinacetylesterase 58 403 IPR004963 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1228 HCH-Chr11:44503973 HCH1g1203 HCH-Chr1:59180259 9.10E-120 dispersed
HCH1g1203 HCH-Chr1:59180259 HCH8g0014 HCH-Chr8:988028 3.30E-176 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1203 K19882 - mtr:11442062 664.455