Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0003 ATGGGGATATCGTTGATAAAAGTGCTTCTTAGACATATTTCACTGTTTCCTCACCTGTCATCTTGTGACTACATAAATTTGCAACCTATTCTGAAGTACTATCATAAAATAGAAGGGGTATTGAAGCTATTGACGCCAATACTTGATGCAGTTGTTAATTCAGAAATAGCTTCTAATGAATTGCTTACTAAAGCCTTTGAAGAACTCGATCATGCTATTGATGAACTAAGGGCGCTCTTTGAAAATTGGCAGCCATTGTCAAGTAAAGTATATTTTGTACTGGAAAGTGAAGCTTTGATATTGAAGATTAGGGAATCTAGCCTGGATATCTTCCAGCTTCTGCAGTCTTCAAATGAAAATCTCCCAGAGGAATTGAGTTCAACATCTCTTGAGCTCTGCATCAAAAAAATTAAGCATATGGGAAATGAACAAATATCTTCCGTTGTTAAAGATGCTATAAGTAATCAAGTAGAGGGTGTTGGACCCAGCTCAGAGGTTTTGGTGAAGCTTGCAGACTCCCTGAGCTTGAGATCAAACCAAGAGATTTTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAGAATGCAGAACAAGCTGAAAATGCTGGAGAAGCTGAGTGCATTGATCAAATGGTTGCTCTTGTAACCTGCATGCATGAAAGACTTGTTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTGGAGCTGATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTACGAGCGGGTTTTTATCAAGAATTGGATTGATCTGGGGCTCAATGTTTGTCCAAAGACTAGACAGACATTGGCTCACACTAATCTTATACCCAATTACACTGTCAAGGCTCTAATTGCAAACTGGTGTGAGTCAAACAATGTGAAATTGTCTGATCCCTTGAGGTCTATAAACTTAAACCATCTTTCACCCCTTCTCGGGAGCTTTGAGCCTGACACACACCGAGAAGCCCTTTTTCCTCCTCCTGAAAAGAACTTGAACGCAGTTGGTGGAACTCAGTCAACTAGGTCTGCAGGTTCTGAAAAGAACTTGAACGCAGTTGGTGGAACTCAGCGAGATGGAACTTTTCCTTTGCTCTCCCATTCTTTCTCAGAGGATTCCTTGTCAAATGGTGCGGGAGATGAAACTGGGTTTGATGTTAGTAGGCTGTCGCTTACAAATTCGGAAGACCAATCAGTCAAATTGGAAGAGAATGGTGGCGATTCGGTTGCAAAACCATCTAGAACCAATGCTTCAAATAATGGTGAGGATGAGCTGTCACATAGTCATACTAGGACTGACTCGGCCTCTATCGTAGTCTCAAATGCTAATTTTTCTCGAGCAGTATCAGGAGATGCCAATGAGGATTCGCAACAGTTGACCAATCTGACTGGTTATGGCAGTGATGCTGCTGGGGAGGGTAAATTAGAGCCAATGACTGCTGGTACCTCAACTACCAGCCATGGAGAATCAGAGCTTCCAGTGAAACTAGTCGACTCGAGATCTCGAGGTCATACAATGTGGCTCCGGCCATCAGAGAGATTTGTTAGTAGAATAATTTCTTCATCTACAACTGAGACGAGGCCTGATCTTTCCGGCATTGAAGCACAAGTTCAGAAGGTGGTTGACGATTTGAAGAGCACTTCATTTGAAACTCTAACAGCTGCTACAGCTGAATTGCGGCTGTTGGCCAAGCATAATATGGATAATCGTATAGTGATTGCACAATGTGGGGCCATTGACTATTTGGTTGATTTGCTTCTCTCTACAGACTCAAAAATTCAGGAAAATGCTGTGACAGCACTTTTAAACCTATCCATAAATGATAATAACAAAAGTGCCATTGCTCAGGCCAATGCAATTGATCCTCTGATTCATGTTCTCAAAACTGGGAGCCCTGAGGCAAAGGAGAACTCAGCGGCAACACTTTTTAGCCTCTCAGTGATTGAGGAGAACAAGGTAAAGATTGGAAGGTCTGGGGCAATAGGGCCTCTGGTTGATTTGCTGGGTAATGGAACTCCAAGAGGAAAGAAGGATGCAGCGACAGCTTTGTTTAATTTGTCAATATTTCATGAGAACAAGGCTAGGATTGTACAAGCAGGAGCTGTGAGGTATCTTGTTGAGTTGATGGACCCGGCAGCTGGAATGGTTGACAAGGCTGTTGCTGTGCTGGCGAATCTTGCTACAATTCCCGAGGGTCGAACGGCAATTGGTCAGGAAGGAGGAATTCCTGTTTTAGTTGAAGTTGTGGAGTTGGGTTCTGCAAGAGGAAAGGAAAATGCAGCTGCAGCGTTATTGCAGCTATGCACAACAAGCAATAGGTATTGCAGTATGGTGCTCCAAGAAGGAGCAGTGCCACCATTAGTGGCATTGTCACAGTCCGGCACTGCCAGGGCGAAAGAAAAGGCCCAGGCACTTCTTAGCCATTTCAGAAGCCAAAGACATGGCAATTCAGGAAGAGGGTAA 2505 43.35 MGISLIKVLLRHISLFPHLSSCDYINLQPILKYYHKIEGVLKLLTPILDAVVNSEIASNELLTKAFEELDHAIDELRALFENWQPLSSKVYFVLESEALILKIRESSLDIFQLLQSSNENLPEELSSTSLELCIKKIKHMGNEQISSVVKDAISNQVEGVGPSSEVLVKLADSLSLRSNQEILIEAVALEKLKENAEQAENAGEAECIDQMVALVTCMHERLVMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGLNVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLSDPLRSINLNHLSPLLGSFEPDTHREALFPPPEKNLNAVGGTQSTRSAGSEKNLNAVGGTQRDGTFPLLSHSFSEDSLSNGAGDETGFDVSRLSLTNSEDQSVKLEENGGDSVAKPSRTNASNNGEDELSHSHTRTDSASIVVSNANFSRAVSGDANEDSQQLTNLTGYGSDAAGEGKLEPMTAGTSTTSHGESELPVKLVDSRSRGHTMWLRPSERFVSRIISSSTTETRPDLSGIEAQVQKVVDDLKSTSFETLTAATAELRLLAKHNMDNRIVIAQCGAIDYLVDLLLSTDSKIQENAVTALLNLSINDNNKSAIAQANAIDPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRYLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRYCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 245033 249381 - evm.model.ptg000010l.1501 HCH2g0003 539228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0003 834 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0003 834 FunFam RING-type E3 ubiquitin transferase 534 829 - -
HCH2g0003 834 SUPERFAMILY RING/U-box 224 313 - -
HCH2g0003 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 633 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 Pfam U-box domain 236 306 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0003 834 Coils Coil 59 79 - -
HCH2g0003 834 MobiDBLite consensus disorder prediction 462 479 - -
HCH2g0003 834 MobiDBLite consensus disorder prediction 462 505 - -
HCH2g0003 834 MobiDBLite consensus disorder prediction 423 437 - -
HCH2g0003 834 MobiDBLite consensus disorder prediction 347 371 - -
HCH2g0003 834 Pfam Armadillo/beta-catenin-like repeat 664 701 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 Pfam Armadillo/beta-catenin-like repeat 621 660 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 Pfam Armadillo/beta-catenin-like repeat 582 619 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 CDD RING-Ubox_PUB 237 289 IPR045210 -
HCH2g0003 834 FunFam RING-type E3 ubiquitin transferase 235 310 - -
HCH2g0003 834 SUPERFAMILY ARM repeat 551 823 IPR016024 -
HCH2g0003 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 715 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 580 620 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 703 742 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 785 825 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 621 661 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 662 702 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 743 783 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 Coils Coil 179 209 - -
HCH2g0003 834 MobiDBLite consensus disorder prediction 340 371 - -
HCH2g0003 834 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0003 834 PANTHER U BOX DOMAIN-CONTAINING 30 827 - -
HCH2g0003 834 Gene3D - 534 830 IPR011989 -
HCH2g0003 834 MobiDBLite consensus disorder prediction 409 448 - -
HCH2g0003 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
HCH2g0003 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 714 755 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0335 HCH-Chr14:32191876 HCH2g0003 HCH-Chr2:245033 4.50E-29 dispersed
HCH2g0003 HCH-Chr2:245033 HCH3g1349 HCH-Chr3:51169913 1.70E-11 dispersed
HCH5g1327 HCH-Chr5:50340912 HCH2g0003 HCH-Chr2:245033 1.30E-82 transposed
HCH14g0334 HCH-Chr14:32162704 HCH2g0003 HCH-Chr2:245033 2.30E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0003 - - - 0.0