Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0003 | ATGGGGATATCGTTGATAAAAGTGCTTCTTAGACATATTTCACTGTTTCCTCACCTGTCATCTTGTGACTACATAAATTTGCAACCTATTCTGAAGTACTATCATAAAATAGAAGGGGTATTGAAGCTATTGACGCCAATACTTGATGCAGTTGTTAATTCAGAAATAGCTTCTAATGAATTGCTTACTAAAGCCTTTGAAGAACTCGATCATGCTATTGATGAACTAAGGGCGCTCTTTGAAAATTGGCAGCCATTGTCAAGTAAAGTATATTTTGTACTGGAAAGTGAAGCTTTGATATTGAAGATTAGGGAATCTAGCCTGGATATCTTCCAGCTTCTGCAGTCTTCAAATGAAAATCTCCCAGAGGAATTGAGTTCAACATCTCTTGAGCTCTGCATCAAAAAAATTAAGCATATGGGAAATGAACAAATATCTTCCGTTGTTAAAGATGCTATAAGTAATCAAGTAGAGGGTGTTGGACCCAGCTCAGAGGTTTTGGTGAAGCTTGCAGACTCCCTGAGCTTGAGATCAAACCAAGAGATTTTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAGAATGCAGAACAAGCTGAAAATGCTGGAGAAGCTGAGTGCATTGATCAAATGGTTGCTCTTGTAACCTGCATGCATGAAAGACTTGTTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTGGAGCTGATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTACGAGCGGGTTTTTATCAAGAATTGGATTGATCTGGGGCTCAATGTTTGTCCAAAGACTAGACAGACATTGGCTCACACTAATCTTATACCCAATTACACTGTCAAGGCTCTAATTGCAAACTGGTGTGAGTCAAACAATGTGAAATTGTCTGATCCCTTGAGGTCTATAAACTTAAACCATCTTTCACCCCTTCTCGGGAGCTTTGAGCCTGACACACACCGAGAAGCCCTTTTTCCTCCTCCTGAAAAGAACTTGAACGCAGTTGGTGGAACTCAGTCAACTAGGTCTGCAGGTTCTGAAAAGAACTTGAACGCAGTTGGTGGAACTCAGCGAGATGGAACTTTTCCTTTGCTCTCCCATTCTTTCTCAGAGGATTCCTTGTCAAATGGTGCGGGAGATGAAACTGGGTTTGATGTTAGTAGGCTGTCGCTTACAAATTCGGAAGACCAATCAGTCAAATTGGAAGAGAATGGTGGCGATTCGGTTGCAAAACCATCTAGAACCAATGCTTCAAATAATGGTGAGGATGAGCTGTCACATAGTCATACTAGGACTGACTCGGCCTCTATCGTAGTCTCAAATGCTAATTTTTCTCGAGCAGTATCAGGAGATGCCAATGAGGATTCGCAACAGTTGACCAATCTGACTGGTTATGGCAGTGATGCTGCTGGGGAGGGTAAATTAGAGCCAATGACTGCTGGTACCTCAACTACCAGCCATGGAGAATCAGAGCTTCCAGTGAAACTAGTCGACTCGAGATCTCGAGGTCATACAATGTGGCTCCGGCCATCAGAGAGATTTGTTAGTAGAATAATTTCTTCATCTACAACTGAGACGAGGCCTGATCTTTCCGGCATTGAAGCACAAGTTCAGAAGGTGGTTGACGATTTGAAGAGCACTTCATTTGAAACTCTAACAGCTGCTACAGCTGAATTGCGGCTGTTGGCCAAGCATAATATGGATAATCGTATAGTGATTGCACAATGTGGGGCCATTGACTATTTGGTTGATTTGCTTCTCTCTACAGACTCAAAAATTCAGGAAAATGCTGTGACAGCACTTTTAAACCTATCCATAAATGATAATAACAAAAGTGCCATTGCTCAGGCCAATGCAATTGATCCTCTGATTCATGTTCTCAAAACTGGGAGCCCTGAGGCAAAGGAGAACTCAGCGGCAACACTTTTTAGCCTCTCAGTGATTGAGGAGAACAAGGTAAAGATTGGAAGGTCTGGGGCAATAGGGCCTCTGGTTGATTTGCTGGGTAATGGAACTCCAAGAGGAAAGAAGGATGCAGCGACAGCTTTGTTTAATTTGTCAATATTTCATGAGAACAAGGCTAGGATTGTACAAGCAGGAGCTGTGAGGTATCTTGTTGAGTTGATGGACCCGGCAGCTGGAATGGTTGACAAGGCTGTTGCTGTGCTGGCGAATCTTGCTACAATTCCCGAGGGTCGAACGGCAATTGGTCAGGAAGGAGGAATTCCTGTTTTAGTTGAAGTTGTGGAGTTGGGTTCTGCAAGAGGAAAGGAAAATGCAGCTGCAGCGTTATTGCAGCTATGCACAACAAGCAATAGGTATTGCAGTATGGTGCTCCAAGAAGGAGCAGTGCCACCATTAGTGGCATTGTCACAGTCCGGCACTGCCAGGGCGAAAGAAAAGGCCCAGGCACTTCTTAGCCATTTCAGAAGCCAAAGACATGGCAATTCAGGAAGAGGGTAA | 2505 | 43.35 | MGISLIKVLLRHISLFPHLSSCDYINLQPILKYYHKIEGVLKLLTPILDAVVNSEIASNELLTKAFEELDHAIDELRALFENWQPLSSKVYFVLESEALILKIRESSLDIFQLLQSSNENLPEELSSTSLELCIKKIKHMGNEQISSVVKDAISNQVEGVGPSSEVLVKLADSLSLRSNQEILIEAVALEKLKENAEQAENAGEAECIDQMVALVTCMHERLVMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGLNVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLSDPLRSINLNHLSPLLGSFEPDTHREALFPPPEKNLNAVGGTQSTRSAGSEKNLNAVGGTQRDGTFPLLSHSFSEDSLSNGAGDETGFDVSRLSLTNSEDQSVKLEENGGDSVAKPSRTNASNNGEDELSHSHTRTDSASIVVSNANFSRAVSGDANEDSQQLTNLTGYGSDAAGEGKLEPMTAGTSTTSHGESELPVKLVDSRSRGHTMWLRPSERFVSRIISSSTTETRPDLSGIEAQVQKVVDDLKSTSFETLTAATAELRLLAKHNMDNRIVIAQCGAIDYLVDLLLSTDSKIQENAVTALLNLSINDNNKSAIAQANAIDPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRYLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRYCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG | 834 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 245033 | 249381 | - | evm.model.ptg000010l.1501 | HCH2g0003 | 539228 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0003 | 834 | ProSiteProfiles | U-box domain profile. | 235 | 309 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH2g0003 | 834 | FunFam | RING-type E3 ubiquitin transferase | 534 | 829 | - | - | |
HCH2g0003 | 834 | SUPERFAMILY | RING/U-box | 224 | 313 | - | - | |
HCH2g0003 | 834 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 591 | 633 | IPR000225 | GO:0005515(InterPro) | |
HCH2g0003 | 834 | Pfam | U-box domain | 236 | 306 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH2g0003 | 834 | Coils | Coil | 59 | 79 | - | - | |
HCH2g0003 | 834 | MobiDBLite | consensus disorder prediction | 462 | 479 | - | - | |
HCH2g0003 | 834 | MobiDBLite | consensus disorder prediction | 462 | 505 | - | - | |
HCH2g0003 | 834 | MobiDBLite | consensus disorder prediction | 423 | 437 | - | - | |
HCH2g0003 | 834 | MobiDBLite | consensus disorder prediction | 347 | 371 | - | - | |
HCH2g0003 | 834 | Pfam | Armadillo/beta-catenin-like repeat | 664 | 701 | IPR000225 | GO:0005515(InterPro) | |
HCH2g0003 | 834 | Pfam | Armadillo/beta-catenin-like repeat | 621 | 660 | IPR000225 | GO:0005515(InterPro) | |
HCH2g0003 | 834 | Pfam | Armadillo/beta-catenin-like repeat | 582 | 619 | IPR000225 | GO:0005515(InterPro) | |
HCH2g0003 | 834 | CDD | RING-Ubox_PUB | 237 | 289 | IPR045210 | - | |
HCH2g0003 | 834 | FunFam | RING-type E3 ubiquitin transferase | 235 | 310 | - | - | |
HCH2g0003 | 834 | SUPERFAMILY | ARM repeat | 551 | 823 | IPR016024 | - | |
HCH2g0003 | 834 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 673 | 715 | IPR000225 | GO:0005515(InterPro) | |
HCH2g0003 | 834 | SMART | arm_5 | 580 | 620 | IPR000225 | GO:0005515(InterPro) | |
HCH2g0003 | 834 | SMART | arm_5 | 703 | 742 | IPR000225 | GO:0005515(InterPro) | |
HCH2g0003 | 834 | SMART | arm_5 | 785 | 825 | IPR000225 | GO:0005515(InterPro) | |
HCH2g0003 | 834 | SMART | arm_5 | 621 | 661 | IPR000225 | GO:0005515(InterPro) | |
HCH2g0003 | 834 | SMART | arm_5 | 662 | 702 | IPR000225 | GO:0005515(InterPro) | |
HCH2g0003 | 834 | SMART | arm_5 | 743 | 783 | IPR000225 | GO:0005515(InterPro) | |
HCH2g0003 | 834 | Coils | Coil | 179 | 209 | - | - | |
HCH2g0003 | 834 | MobiDBLite | consensus disorder prediction | 340 | 371 | - | - | |
HCH2g0003 | 834 | SMART | Ubox_2 | 239 | 302 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH2g0003 | 834 | PANTHER | U BOX DOMAIN-CONTAINING | 30 | 827 | - | - | |
HCH2g0003 | 834 | Gene3D | - | 534 | 830 | IPR011989 | - | |
HCH2g0003 | 834 | MobiDBLite | consensus disorder prediction | 409 | 448 | - | - | |
HCH2g0003 | 834 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 310 | IPR013083 | - | |
HCH2g0003 | 834 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 714 | 755 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0335 | HCH-Chr14:32191876 | HCH2g0003 | HCH-Chr2:245033 | 4.50E-29 | dispersed | |
HCH2g0003 | HCH-Chr2:245033 | HCH3g1349 | HCH-Chr3:51169913 | 1.70E-11 | dispersed | |
HCH5g1327 | HCH-Chr5:50340912 | HCH2g0003 | HCH-Chr2:245033 | 1.30E-82 | transposed | |
HCH14g0334 | HCH-Chr14:32162704 | HCH2g0003 | HCH-Chr2:245033 | 2.30E-111 | wgd |
Pathway information
