Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0003 ATGGGGATATCGTTGATAAAAGTGCTTCTTAGACATATTTCACTGTTTCCTCACCTGTCATCTTGTGACTACATAAATTTGCAACCTATTCTGAAGTACTATCATAAAATAGAAGGGGTATTGAAGCTATTGACGCCAATACTTGATGCAGTTGTTAATTCAGAAATAGCTTCTAATGAATTGCTTACTAAAGCCTTTGAAGAACTCGATCATGCTATTGATGAACTAAGGGCGCTCTTTGAAAATTGGCAGCCATTGTCAAGTAAAGTATATTTTGTACTGGAAAGTGAAGCTTTGATATTGAAGATTAGGGAATCTAGCCTGGATATCTTCCAGCTTCTGCAGTCTTCAAATGAAAATCTCCCAGAGGAATTGAGTTCAACATCTCTTGAGCTCTGCATCAAAAAAATTAAGCATATGGGAAATGAACAAATATCTTCCGTTGTTAAAGATGCTATAAGTAATCAAGTAGAGGGTGTTGGACCCAGCTCAGAGGTTTTGGTGAAGCTTGCAGACTCCCTGAGCTTGAGATCAAACCAAGAGATTTTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAGAATGCAGAACAAGCTGAAAATGCTGGAGAAGCTGAGTGCATTGATCAAATGGTTGCTCTTGTAACCTGCATGCATGAAAGACTTGTTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTGGAGCTGATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTACGAGCGGGTTTTTATCAAGAATTGGATTGATCTGGGGCTCAATGTTTGTCCAAAGACTAGACAGACATTGGCTCACACTAATCTTATACCCAATTACACTGTCAAGGCTCTAATTGCAAACTGGTGTGAGTCAAACAATGTGAAATTGTCTGATCCCTTGAGGTCTATAAACTTAAACCATCTTTCACCCCTTCTCGGGAGCTTTGAGCCTGACACACACCGAGAAGCCCTTTTTCCTCCTCCTGAAAAGAACTTGAACGCAGTTGGTGGAACTCAGTCAACTAGGTCTGCAGGTTCTGAAAAGAACTTGAACGCAGTTGGTGGAACTCAGCGAGATGGAACTTTTCCTTTGCTCTCCCATTCTTTCTCAGAGGATTCCTTGTCAAATGGTGCGGGAGATGAAACTGGGTTTGATGTTAGTAGGCTGTCGCTTACAAATTCGGAAGACCAATCAGTCAAATTGGAAGAGAATGGTGGCGATTCGGTTGCAAAACCATCTAGAACCAATGCTTCAAATAATGGTGAGGATGAGCTGTCACATAGTCATACTAGGACTGACTCGGCCTCTATCGTAGTCTCAAATGCTAATTTTTCTCGAGCAGTATCAGGAGATGCCAATGAGGATTCGCAACAGTTGACCAATCTGACTGGTTATGGCAGTGATGCTGCTGGGGAGGGTAAATTAGAGCCAATGACTGCTGGTACCTCAACTACCAGCCATGGAGAATCAGAGCTTCCAGTGAAACTAGTCGACTCGAGATCTCGAGGTCATACAATGTGGCTCCGGCCATCAGAGAGATTTGTTAGTAGAATAATTTCTTCATCTACAACTGAGACGAGGCCTGATCTTTCCGGCATTGAAGCACAAGTTCAGAAGGTGGTTGACGATTTGAAGAGCACTTCATTTGAAACTCTAACAGCTGCTACAGCTGAATTGCGGCTGTTGGCCAAGCATAATATGGATAATCGTATAGTGATTGCACAATGTGGGGCCATTGACTATTTGGTTGATTTGCTTCTCTCTACAGACTCAAAAATTCAGGAAAATGCTGTGACAGCACTTTTAAACCTATCCATAAATGATAATAACAAAAGTGCCATTGCTCAGGCCAATGCAATTGATCCTCTGATTCATGTTCTCAAAACTGGGAGCCCTGAGGCAAAGGAGAACTCAGCGGCAACACTTTTTAGCCTCTCAGTGATTGAGGAGAACAAGGTAAAGATTGGAAGGTCTGGGGCAATAGGGCCTCTGGTTGATTTGCTGGGTAATGGAACTCCAAGAGGAAAGAAGGATGCAGCGACAGCTTTGTTTAATTTGTCAATATTTCATGAGAACAAGGCTAGGATTGTACAAGCAGGAGCTGTGAGGTATCTTGTTGAGTTGATGGACCCGGCAGCTGGAATGGTTGACAAGGCTGTTGCTGTGCTGGCGAATCTTGCTACAATTCCCGAGGGTCGAACGGCAATTGGTCAGGAAGGAGGAATTCCTGTTTTAGTTGAAGTTGTGGAGTTGGGTTCTGCAAGAGGAAAGGAAAATGCAGCTGCAGCGTTATTGCAGCTATGCACAACAAGCAATAGGTATTGCAGTATGGTGCTCCAAGAAGGAGCAGTGCCACCATTAGTGGCATTGTCACAGTCCGGCACTGCCAGGGCGAAAGAAAAGGCCCAGGCACTTCTTAGCCATTTCAGAAGCCAAAGACATGGCAATTCAGGAAGAGGGTAA 2505 43.35 MGISLIKVLLRHISLFPHLSSCDYINLQPILKYYHKIEGVLKLLTPILDAVVNSEIASNELLTKAFEELDHAIDELRALFENWQPLSSKVYFVLESEALILKIRESSLDIFQLLQSSNENLPEELSSTSLELCIKKIKHMGNEQISSVVKDAISNQVEGVGPSSEVLVKLADSLSLRSNQEILIEAVALEKLKENAEQAENAGEAECIDQMVALVTCMHERLVMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGLNVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLSDPLRSINLNHLSPLLGSFEPDTHREALFPPPEKNLNAVGGTQSTRSAGSEKNLNAVGGTQRDGTFPLLSHSFSEDSLSNGAGDETGFDVSRLSLTNSEDQSVKLEENGGDSVAKPSRTNASNNGEDELSHSHTRTDSASIVVSNANFSRAVSGDANEDSQQLTNLTGYGSDAAGEGKLEPMTAGTSTTSHGESELPVKLVDSRSRGHTMWLRPSERFVSRIISSSTTETRPDLSGIEAQVQKVVDDLKSTSFETLTAATAELRLLAKHNMDNRIVIAQCGAIDYLVDLLLSTDSKIQENAVTALLNLSINDNNKSAIAQANAIDPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRYLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRYCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 245033 249381 - evm.model.ptg000010l.1501 HCH2g0003 539228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0003 834 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0003 834 FunFam RING-type E3 ubiquitin transferase 534 829 - -
HCH2g0003 834 SUPERFAMILY RING/U-box 224 313 - -
HCH2g0003 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 633 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 Pfam U-box domain 236 306 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0003 834 Coils Coil 59 79 - -
HCH2g0003 834 MobiDBLite consensus disorder prediction 462 479 - -
HCH2g0003 834 MobiDBLite consensus disorder prediction 462 505 - -
HCH2g0003 834 MobiDBLite consensus disorder prediction 423 437 - -
HCH2g0003 834 MobiDBLite consensus disorder prediction 347 371 - -
HCH2g0003 834 Pfam Armadillo/beta-catenin-like repeat 664 701 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 Pfam Armadillo/beta-catenin-like repeat 621 660 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 Pfam Armadillo/beta-catenin-like repeat 582 619 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 CDD RING-Ubox_PUB 237 289 IPR045210 -
HCH2g0003 834 FunFam RING-type E3 ubiquitin transferase 235 310 - -
HCH2g0003 834 SUPERFAMILY ARM repeat 551 823 IPR016024 -
HCH2g0003 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 715 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 580 620 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 703 742 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 785 825 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 621 661 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 662 702 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 SMART arm_5 743 783 IPR000225 GO:0005515(InterPro)
HCH2g0003 834 Coils Coil 179 209 - -
HCH2g0003 834 MobiDBLite consensus disorder prediction 340 371 - -
HCH2g0003 834 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0003 834 PANTHER U BOX DOMAIN-CONTAINING 30 827 - -
HCH2g0003 834 Gene3D - 534 830 IPR011989 -
HCH2g0003 834 MobiDBLite consensus disorder prediction 409 448 - -
HCH2g0003 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
HCH2g0003 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 714 755 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0003 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0335 HCH-Chr14:32191876 HCH2g0003 HCH-Chr2:245033 4.50E-29 dispersed
HCH2g0003 HCH-Chr2:245033 HCH3g1349 HCH-Chr3:51169913 1.70E-11 dispersed
HCH5g1327 HCH-Chr5:50340912 HCH2g0003 HCH-Chr2:245033 1.30E-82 transposed
HCH14g0334 HCH-Chr14:32162704 HCH2g0003 HCH-Chr2:245033 2.30E-111 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0270 . 1 1039 U-box Gene Family AT5G15400 75.0 0.0e+00 1534.2
HCH2g0003 . 1 834 U-box Gene Family AT5G67340 50.2 1.9e-128 456.8
HCH2g0003 . 196 834 U-box Gene Family AT2G23140 65.4 4.1e-122 435.6
HCH4g0103 . 1 765 U-box Gene Family AT1G24330 59.8 3.4e-248 854.7
HCH1g1136 . 1 756 U-box Gene Family AT1G24330 58.2 4.8e-234 807.7
HCH4g0103 . 1 764 U-box Gene Family AT1G67530 59.6 6.5e-247 850.5
HCH1g1136 . 1 762 U-box Gene Family AT1G67530 58.4 1.7e-231 799.3
HCH14g0857 . 8 367 U-box Gene Family AT4G21350 61.8 2.1e-118 422.5
HCH5g0206 . 134 456 U-box Gene Family AT3G07360 56.7 3.6e-82 302.0
HCH1g0050 . 233 447 U-box Gene Family AT1G71020 65.8 8.8e-77 284.6
HCH10g1311 . 266 454 U-box Gene Family AT1G71020 59.4 1.1e-55 214.5
HCH2g1094 . 253 433 U-box Gene Family AT1G71020 58.3 2.2e-51 200.3
HCH1g0691 . 251 418 U-box Gene Family AT1G71020 60.2 7.0e-50 195.3
HCH3g1349 . 258 430 U-box Gene Family AT1G71020 58.0 2.7e-49 193.4
HCH1g0050 . 20 651 U-box Gene Family AT1G23030 58.0 1.4e-111 400.6
HCH10g1311 . 19 650 U-box Gene Family AT1G23030 55.5 1.2e-99 360.9
HCH2g1094 . 95 637 U-box Gene Family AT2G28830 53.2 4.4e-107 385.6
HCH3g1349 . 92 638 U-box Gene Family AT2G28830 59.0 2.0e-99 360.1
HCH2g1094 . 1 637 U-box Gene Family AT3G46510 67.7 9.3e-170 594.0
HCH3g1349 . 1 637 U-box Gene Family AT3G46510 67.2 5.6e-159 558.1
HCH1g0691 . 15 625 U-box Gene Family AT3G46510 58.5 4.2e-122 435.6
HCH1g0691 . 11 626 U-box Gene Family AT3G54850 69.0 9.2e-167 583.9
HCH2g1094 . 15 644 U-box Gene Family AT3G54850 56.2 2.7e-118 422.9
HCH2g0608 . 77 628 U-box Gene Family AT5G42340 65.8 5.0e-131 465.3
HCH9g0828 . 1 679 U-box Gene Family AT5G01830 57.0 4.2e-202 701.4
HCH3g0732 . 1 714 U-box Gene Family AT1G29340 69.2 3.9e-254 874.4
HCH11g0480 . 2 407 U-box Gene Family AT3G52450 57.5 5.8e-136 481.1
HCH9g1187 . 4 416 U-box Gene Family AT3G52450 55.3 4.0e-129 458.4
HCH11g0480 . 2 407 U-box Gene Family AT2G35930 59.3 7.1e-136 480.7
HCH9g1187 . 2 415 U-box Gene Family AT2G35930 54.6 4.8e-124 441.4
HCH11g0896 . 1 427 U-box Gene Family AT3G19380 62.7 1.2e-143 506.5
HCH11g0896 . 1 427 U-box Gene Family AT1G49780 63.6 1.5e-149 526.2
HCH2g0197 . 1 411 U-box Gene Family AT5G64660 52.8 3.6e-111 398.7
HCH2g0197 . 1 411 U-box Gene Family AT5G09800 51.7 9.4e-104 374.0
HCH2g0197 . 7 411 U-box Gene Family AT3G18710 50.1 1.2e-98 357.1
HCH12g0544 . 1 451 U-box Gene Family AT3G49810 67.8 5.9e-168 587.4
HCH4g0575 . 1 394 U-box Gene Family AT3G49810 65.5 1.1e-142 503.4
HCH12g0544 . 1 451 U-box Gene Family AT5G65920 66.2 1.1e-161 566.6
HCH4g0575 . 1 394 U-box Gene Family AT5G65920 66.0 3.6e-141 498.4
HCH13g1129 . 89 610 U-box Gene Family AT2G45910 54.7 1.6e-155 547.0
HCH5g0667 . 25 822 U-box Gene Family AT4G25160 51.4 4.5e-222 768.1
HCH4g0858 . 34 843 U-box Gene Family AT1G76390 62.0 3.3e-278 954.5
HCH4g0858 . 42 841 U-box Gene Family AT1G20780 62.6 4.7e-285 977.2
HCH4g0103 . 1 767 U-box Gene Family AT1G27910 63.4 5.8e-272 933.7
HCH1g1136 . 1 765 U-box Gene Family AT1G27910 63.2 1.4e-262 902.5
HCH14g0364 . 1 592 U-box Gene Family AT5G67530 75.0 5.8e-264 906.7
HCH7g1556 . 3 157 U-box Gene Family AT5G67530 53.5 2.9e-45 180.3
HCH5g0667 . 12 822 U-box Gene Family AT5G61550 50.2 4.9e-224 774.6
HCH7g1364 . 1 518 U-box Gene Family AT1G04510 74.7 3.6e-225 777.7
HCH7g1364 . 1 485 U-box Gene Family AT2G33340 74.7 1.9e-212 735.3
HCH5g0205 . 5 273 U-box Gene Family AT3G07370 66.2 2.5e-100 362.1
HCH9g0270 . 1 1039 U-box Gene Family AT5G15400 75.0 0.0e+00 1534.2
HCH2g0003 . 1 834 U-box Gene Family AT5G67340 50.2 1.9e-128 456.8
HCH2g0003 . 196 834 U-box Gene Family AT2G23140 65.4 4.1e-122 435.6
HCH4g0103 . 1 765 U-box Gene Family AT1G24330 59.8 3.4e-248 854.7
HCH1g1136 . 1 756 U-box Gene Family AT1G24330 58.2 4.8e-234 807.7
HCH4g0103 . 1 764 U-box Gene Family AT1G67530 59.6 6.5e-247 850.5
HCH1g1136 . 1 762 U-box Gene Family AT1G67530 58.4 1.7e-231 799.3
HCH14g0857 . 8 367 U-box Gene Family AT4G21350 61.8 2.1e-118 422.5
HCH5g0206 . 134 456 U-box Gene Family AT3G07360 56.7 3.6e-82 302.0
HCH1g0050 . 233 447 U-box Gene Family AT1G71020 65.8 8.8e-77 284.6
HCH10g1311 . 266 454 U-box Gene Family AT1G71020 59.4 1.1e-55 214.5
HCH2g1094 . 253 433 U-box Gene Family AT1G71020 58.3 2.2e-51 200.3
HCH1g0691 . 251 418 U-box Gene Family AT1G71020 60.2 7.0e-50 195.3
HCH3g1349 . 258 430 U-box Gene Family AT1G71020 58.0 2.7e-49 193.4
HCH1g0050 . 20 651 U-box Gene Family AT1G23030 58.0 1.4e-111 400.6
HCH10g1311 . 19 650 U-box Gene Family AT1G23030 55.5 1.2e-99 360.9
HCH2g1094 . 95 637 U-box Gene Family AT2G28830 53.2 4.4e-107 385.6
HCH3g1349 . 92 638 U-box Gene Family AT2G28830 59.0 2.0e-99 360.1
HCH2g1094 . 1 637 U-box Gene Family AT3G46510 67.7 9.3e-170 594.0
HCH3g1349 . 1 637 U-box Gene Family AT3G46510 67.2 5.6e-159 558.1
HCH1g0691 . 15 625 U-box Gene Family AT3G46510 58.5 4.2e-122 435.6
HCH1g0691 . 11 626 U-box Gene Family AT3G54850 69.0 9.2e-167 583.9
HCH2g1094 . 15 644 U-box Gene Family AT3G54850 56.2 2.7e-118 422.9
HCH2g0608 . 77 628 U-box Gene Family AT5G42340 65.8 5.0e-131 465.3
HCH9g0828 . 1 679 U-box Gene Family AT5G01830 57.0 4.2e-202 701.4
HCH3g0732 . 1 714 U-box Gene Family AT1G29340 69.2 3.9e-254 874.4
HCH11g0480 . 2 407 U-box Gene Family AT3G52450 57.5 5.8e-136 481.1
HCH9g1187 . 4 416 U-box Gene Family AT3G52450 55.3 4.0e-129 458.4
HCH11g0480 . 2 407 U-box Gene Family AT2G35930 59.3 7.1e-136 480.7
HCH9g1187 . 2 415 U-box Gene Family AT2G35930 54.6 4.8e-124 441.4
HCH11g0896 . 1 427 U-box Gene Family AT3G19380 62.7 1.2e-143 506.5
HCH11g0896 . 1 427 U-box Gene Family AT1G49780 63.6 1.5e-149 526.2
HCH2g0197 . 1 411 U-box Gene Family AT5G64660 52.8 3.6e-111 398.7
HCH2g0197 . 1 411 U-box Gene Family AT5G09800 51.7 9.4e-104 374.0
HCH2g0197 . 7 411 U-box Gene Family AT3G18710 50.1 1.2e-98 357.1
HCH12g0544 . 1 451 U-box Gene Family AT3G49810 67.8 5.9e-168 587.4
HCH4g0575 . 1 394 U-box Gene Family AT3G49810 65.5 1.1e-142 503.4
HCH12g0544 . 1 451 U-box Gene Family AT5G65920 66.2 1.1e-161 566.6
HCH4g0575 . 1 394 U-box Gene Family AT5G65920 66.0 3.6e-141 498.4
HCH13g1129 . 89 610 U-box Gene Family AT2G45910 54.7 1.6e-155 547.0
HCH5g0667 . 25 822 U-box Gene Family AT4G25160 51.4 4.5e-222 768.1
HCH4g0858 . 34 843 U-box Gene Family AT1G76390 62.0 3.3e-278 954.5
HCH4g0858 . 42 841 U-box Gene Family AT1G20780 62.6 4.7e-285 977.2
HCH4g0103 . 1 767 U-box Gene Family AT1G27910 63.4 5.8e-272 933.7
HCH1g1136 . 1 765 U-box Gene Family AT1G27910 63.2 1.4e-262 902.5
HCH14g0364 . 1 592 U-box Gene Family AT5G67530 75.0 5.8e-264 906.7
HCH7g1556 . 3 157 U-box Gene Family AT5G67530 53.5 2.9e-45 180.3
HCH5g0667 . 12 822 U-box Gene Family AT5G61550 50.2 4.9e-224 774.6
HCH7g1364 . 1 518 U-box Gene Family AT1G04510 74.7 3.6e-225 777.7
HCH7g1364 . 1 485 U-box Gene Family AT2G33340 74.7 1.9e-212 735.3
HCH5g0205 . 5 273 U-box Gene Family AT3G07370 66.2 2.5e-100 362.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004594 2 4 1 2 2 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 42