Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH2g0004 | ATGCACCCTGAAGAACGGGCTTTGTTAGTGGAGGAGGAGGAGGAAGAAGAAGAATTAGAAGAAAATGCTTATGACTTGATCGATAAAGTTGTGGTGATTGGGATCAATGAATCAGAGGGTGGATCATTCTCATTCTCATGGAAAAAGCTATGGCTTTTTACAGGGCCTGGGTTTTTGATGAGCATAGCCTTTCTAGACCCTGGGAATTTGGAGTCCAATCTTCAATCAGGCGCGATTGCTGGCTATTCACTGTTATGGCTTTTGTTTTGGGCAACGGCGATGGGTCTTTTGATCCAATTATTATCAGCCAGACTTGGGGTCGTCACTGGAAGACATTTAGCCGAGCTTTGTAGGGAAGAATACCCGACTTGGGCAAGAATGGTTCTTTGGGTTATGGCTGAGTTGGCTCTCATTGGCTCTGATATTCAGGAGGTTATTGGTAGTGCTATTGCTATTAAGATTTTATCTAATGGTGCTTTGCCTCTTTGGGCTGGGGTTATCATCACTGCTTTAGACTGTTTTATCTTTCTCTTTCTTGAGAACTATGGTGTGAGGAAATTGGAGGCTGTTTTTGCTTTTCTTATTGCTATTATGGCCCTCTCATTTGCTTGGATGTTTGGTGAAACGAAACCAAATGGCAAGGAGCTTCTACTGGGTCTTTTAATTCCAAAACTTAGCTCCAACACCATAAAGCAAGCTGTTGGAATTGTGGGATGTATCATTATGCCTCATAATGTATTTTTGCACTCAGCTCTTGTACAATCAAGAGATATCAATCCCACCAACAGAGGGCGGGTGCAAGAAGCTCTCAAATACTACTCCATTGAGTCCACGATTGCCCTTTTAGTCTCCTTCATCATCAATCTCTTTGTTACCACTGTCTTTGCGAAAGCTTTTTATGCTACACAATTTGCCGATACCATTGGCCTTGTAAATGCTGGACAGTATCTTCAAGATGAATATGGTGGTGGACTTTTACCCATTTTGTACATCTGGGCTATTGGTTTGTTAGCGGCTGGCCAAAGCAGTACTATTACTGGTACTTATGCAGGCCAGTTTATCATGGGAGGCTTCCTAAACTTGAAGTTGAAAAAGTGGCTTAGAGCATTAATCACTCGAAGCTTTGCAATTGTCCCCACCATGATAGTCGCTCTCGTTTTCGAATCTTCTGACTCAATGGTGGATGTGCTAAATGAATGGCTCAATGTCCTCCAGTCGATTCAGATCCCTTTTGCACTGATTCCTCTTCTCTGTTTGGCTTCTAAGGAACATATTATGGGCACTTTTAAAATTGGACCTCTTTTAAAGACATTCTCTTGGCTCGTGGCGATTTTGGTGATGGCTATTAATGGGTATCTTTTGGTGGATTTCTTCTCATCGGAAGTGAATGGAATTTTTGTGGCCGTCTTCGTTTGTGTGTTCATTGCTGCATATATTGCCTTTGTTGTTTACCTGGTTTTTCAAAGTGTTTCATTATCGAGTTGGCACAAGTTAATAAACAAGAAGAGTCACACTGGCATAGGTAACTGA | 1530 | 41.9 | MHPEERALLVEEEEEEEELEENAYDLIDKVVVIGINESEGGSFSFSWKKLWLFTGPGFLMSIAFLDPGNLESNLQSGAIAGYSLLWLLFWATAMGLLIQLLSARLGVVTGRHLAELCREEYPTWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGALPLWAGVIITALDCFIFLFLENYGVRKLEAVFAFLIAIMALSFAWMFGETKPNGKELLLGLLIPKLSSNTIKQAVGIVGCIIMPHNVFLHSALVQSRDINPTNRGRVQEALKYYSIESTIALLVSFIINLFVTTVFAKAFYATQFADTIGLVNAGQYLQDEYGGGLLPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALVFESSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKEHIMGTFKIGPLLKTFSWLVAILVMAINGYLLVDFFSSEVNGIFVAVFVCVFIAAYIAFVVYLVFQSVSLSSWHKLINKKSHTGIGN | 509 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 279668 | 281751 | - | evm.model.ptg000010l.1500 | HCH2g0004 | 539229 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH2g0004 | 509 | PRINTS | Natural resistance-associated macrophage protein signature | 368 | 385 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH2g0004 | 509 | PRINTS | Natural resistance-associated macrophage protein signature | 159 | 178 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH2g0004 | 509 | PRINTS | Natural resistance-associated macrophage protein signature | 233 | 256 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH2g0004 | 509 | PRINTS | Natural resistance-associated macrophage protein signature | 129 | 155 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH2g0004 | 509 | PRINTS | Natural resistance-associated macrophage protein signature | 184 | 205 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH2g0004 | 509 | PRINTS | Natural resistance-associated macrophage protein signature | 340 | 359 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH2g0004 | 509 | PRINTS | Natural resistance-associated macrophage protein signature | 402 | 421 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH2g0004 | 509 | Coils | Coil | 2 | 29 | - | - | |
| HCH2g0004 | 509 | NCBIfam | Nramp family divalent metal transporter | 55 | 423 | - | - | |
| HCH2g0004 | 509 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 28 | 494 | IPR001046 | GO:0005384(PANTHER)|GO:0005774(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0042742(PANTHER)|GO:0046873(InterPro)|GO:0055072(PANTHER)|GO:2000379(PANTHER) | |
| HCH2g0004 | 509 | Hamap | Divalent metal cation transporter MntH [mntH]. | 27 | 458 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH2g0004 | 509 | Pfam | Natural resistance-associated macrophage protein-like | 71 | 432 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| HCH2g0004 | 509 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 48 | 426 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH2g0004 | HCH-Chr2:279668 | HCH6g0290 | HCH-Chr6:4090832 | 6.40E-86 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH2g0004 | K21398 | - | csv:101211711 | 837.41 |