Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0010 ATGATGAGAATTCTTGTTCTTGTTTTTGTTGTTGTTGTTGAATGTTGTTATGGACTAAACTCAGATGGTGTTTTTCTTCTTTCTTTCAAATATGGGATTTTGAGTGATCCTCTCTCTCTCCTTCAAAACTGGAATTACTCCGATGACACTCCTTGCTCATGGCATGGCGTTTCCTGTTCCGACCAATCTTCAGTTATCACTATCTCTCTTCCTAATTCTCTCCTTCTTGGCTCTCTCTCTCCTCATCTTGGTTTCATTCAGAATCTCCAGTCTCTCGATCTCTCTAATAATTCTCTCAATGGATCTCTTCCTCCTTCTCTCTTTAGCGCCACCCAACTCCGCTTTCTTCATTTGTCCGACAATTCCATCTCCGGCGACCTCCCCGACACTCTCGGACTCTCCATCAATCTTCAGGTTTTTAACCTCTCTGATAATTCATTGACGGGAACAATCCCTCCTAATCTCACTGCTTTGGATAATCTAACTCTTGTTTCTTTGAAGGGAAATTACCTTTCCGGTAATCTTCCAACTGGGTTTAAAGCTGTTCAGGTTTTAGATCTGTCTTCTAATTTGATCAACGGATCTTTACCGTCTGATTTCGGAGGCGATCGTTTGCATTACTTGAACATCTCTTACAACAAACTCTCCGGCGAAATCCCACCGGAATTCGTTAAAAAAATTCCGGCCAACGCAACACTTGACTTCTCTTCCAACAATCTCACCGGAGAAATCCCTAAATCTGACGCTTTCATGAACCAAGAAACAAGTTCGTTCGCGGGAAATCCTAACCTTTGCGGTGAGCCGACGAAAAACCCATGTCCAATTCCATCATCACCGGTGTCCCTACCGCCGGCGATCGCCGCCATTCCTAAAACATTAGACCCAAGTACACGAGATACGACGGCACCTGAAAAACAGAGGAAAACGGGGTTTAAAGCGTCTACAATAATAGCGATTGTACTTGGAGATATTGTAGGACTTGGAATTCTGTTTGTTCTTTTCTTTTACGTTTACCATTTAAAGAAAAAGAATAAAAAATGTGAAAGGACATTGAAAAAGGAAGCGAAAGATAGCTGGTCGACATCTTCATCTTCTTCATCAGAATCAAGAGGGTTTACGAGATGGTCATGCCTGAGAAAGAATGGAGAAGAGGAAGATGAAATGAAAGGAGAAGAGAGAAATGAAGGTGGAGAAGAAGAAGAAGGAGAGAAAAGAAGGGGAAGTCTAGTAACAGTGGATGGAGAAAAGGAACTGGAATTGGAGACACTGTTAAAGGCATCTGCGTATATTCTTGGAGCGAGTGGTACGAGTATAACCTATAAAGCAGTTCTTGAAGATGGTACGATGTTTGCTGTTCGGAGAATCGGGGAAGGTGGGGTTGAGAAATACAAGGACTTTGAAAACCAAGTCAGGATTGTTGGTAAATTGGTTCATCCAAATCTTGTTCATATTCGTGGCTTTTATTGGGGTGTTGATGACAAACTTATCATCTATGATTTCGTCCCTAATGGTAGCCTTGCTAATGCTCGTTACAGGAAAGTGGGGTCCTCTCCTTGTCATCTTCCATGGGAATCACGATTAAGAATAGCAAAAGGAGTGGCAAATGGGCTCTCTTATCTTCACGAGAAGAAGCATGTCCATGGAAATTTGAGGCCCAAAAATATTCTATTGGGCCATGATATGGAGCCCAAAATAGGAGAATTTGGTCTTGAGAAGCTTTTATCATTGGGTGATACAAGCTACAAAGCTGGAGCCTCTAATCGTAATTTTGGAAGTAAGAGATCCACTGCTTCACGTGAGAGCTTCCAAGATTTAGTAAATGGGCCGAGTCCTGGGCCAAGCCCAAGTTCAATTGGAGGGGTATCTCCCTACATAGCACCGGAATCACTACGGAGCTTAAAGCCCAATCCAAAGTGGGACGTCTACTCTTTCGGGATCATATTGCTTGAGCTATTAACAGGAAAGCTCGTGGTTATGGATCAAATGGGCCAATCACTTGGGCTTGCAGTGGAAGACAAGAATCGGGCCTTCAAAATGGCTGACATGGCAATTCGTGCTGACCTGGAAGGGAAAGAAGAAGCCTTACTCTCTTGCTTTAAATTAGGGTTTAGTTGTGCTTCTTCAGCCCCACAAAAGAGACCAAGTATGAAAGAAGCATTCCAAGTTTTGGAGAAATTTCCATCTTCATCAACAAAATCATATCATTACGCTCTCTAA 2217 42.58 MMRILVLVFVVVVECCYGLNSDGVFLLSFKYGILSDPLSLLQNWNYSDDTPCSWHGVSCSDQSSVITISLPNSLLLGSLSPHLGFIQNLQSLDLSNNSLNGSLPPSLFSATQLRFLHLSDNSISGDLPDTLGLSINLQVFNLSDNSLTGTIPPNLTALDNLTLVSLKGNYLSGNLPTGFKAVQVLDLSSNLINGSLPSDFGGDRLHYLNISYNKLSGEIPPEFVKKIPANATLDFSSNNLTGEIPKSDAFMNQETSSFAGNPNLCGEPTKNPCPIPSSPVSLPPAIAAIPKTLDPSTRDTTAPEKQRKTGFKASTIIAIVLGDIVGLGILFVLFFYVYHLKKKNKKCERTLKKEAKDSWSTSSSSSSESRGFTRWSCLRKNGEEEDEMKGEERNEGGEEEEGEKRRGSLVTVDGEKELELETLLKASAYILGASGTSITYKAVLEDGTMFAVRRIGEGGVEKYKDFENQVRIVGKLVHPNLVHIRGFYWGVDDKLIIYDFVPNGSLANARYRKVGSSPCHLPWESRLRIAKGVANGLSYLHEKKHVHGNLRPKNILLGHDMEPKIGEFGLEKLLSLGDTSYKAGASNRNFGSKRSTASRESFQDLVNGPSPGPSPSSIGGVSPYIAPESLRSLKPNPKWDVYSFGIILLELLTGKLVVMDQMGQSLGLAVEDKNRAFKMADMAIRADLEGKEEALLSCFKLGFSCASSAPQKRPSMKEAFQVLEKFPSSSTKSYHYAL 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 695399 698024 + evm.model.ptg000010l.1494 HCH2g0010 539235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0010 738 Gene3D Ribonuclease Inhibitor 180 275 IPR032675 -
HCH2g0010 738 Pfam Leucine rich repeat N-terminal domain 19 60 IPR013210 -
HCH2g0010 738 Pfam Leucine Rich Repeat 112 132 IPR001611 GO:0005515(InterPro)
HCH2g0010 738 Pfam Leucine Rich Repeat 88 108 IPR001611 GO:0005515(InterPro)
HCH2g0010 738 Pfam Leucine Rich Repeat 205 223 IPR001611 GO:0005515(InterPro)
HCH2g0010 738 Pfam Leucine Rich Repeat 136 157 IPR001611 GO:0005515(InterPro)
HCH2g0010 738 Pfam Leucine Rich Repeat 182 201 IPR001611 GO:0005515(InterPro)
HCH2g0010 738 SUPERFAMILY L domain-like 21 268 - -
HCH2g0010 738 FunFam Leucine-rich repeat receptor-like protein kinase 19 177 - -
HCH2g0010 738 Gene3D Phosphorylase Kinase; domain 1 398 500 - -
HCH2g0010 738 ProSiteProfiles Leucine-rich repeat profile. 112 134 IPR001611 GO:0005515(InterPro)
HCH2g0010 738 SUPERFAMILY Protein kinase-like (PK-like) 430 726 IPR011009 -
HCH2g0010 738 ProSiteProfiles Leucine-rich repeat profile. 88 110 IPR001611 GO:0005515(InterPro)
HCH2g0010 738 ProSiteProfiles Protein kinase domain profile. 425 726 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0010 738 FunFam Leucine-rich repeat receptor-like protein kinase 181 275 - -
HCH2g0010 738 MobiDBLite consensus disorder prediction 382 410 - -
HCH2g0010 738 Gene3D Transferase(Phosphotransferase) domain 1 501 736 - -
HCH2g0010 738 MobiDBLite consensus disorder prediction 587 617 - -
HCH2g0010 738 MobiDBLite consensus disorder prediction 587 620 - -
HCH2g0010 738 Pfam Protein kinase domain 431 721 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0010 738 PANTHER OS05G0588300 PROTEIN 136 728 IPR050994 -
HCH2g0010 738 Gene3D Ribonuclease Inhibitor 19 179 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0742 HCH-Chr1:56205829 HCH2g0010 HCH-Chr2:695399 5.30E-86 dispersed
HCH2g0010 HCH-Chr2:695399 HCH4g1857 HCH-Chr4:48540912 3.80E-156 dispersed
HCH2g0010 HCH-Chr2:695399 HCH10g1291 HCH-Chr10:45366271 8.40E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81306 PF00069 Pkinase 1.40E-28 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0010 - - - 0.0