Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0022 ATGAATGCTCATCATTTGAGCTTCGTTTTATTTCTTTCTTTCTCTTTTTCATTCATCCGAGGATTACCCCTTTTTCCCAACCGAAGAATTCTCCATCAACCACTCTTTCCGGTCGCCTCCCAACCACCACCGGAGTTCGACATTCCGCCTCCTCCTCCTCCACCAGAACAAGGAGGAGGAGAAGAAGAACCGTTTTTTCACGAACTGCCAAATGGAGCGACTCCAGATCAGAGTCAACCACAGAGTTCAGCTACTAATGGAAATGGAAGCATGCCAATCCCAGCCGCTACTCAAACCTCTAATAAACCCACTAAAACCCTCGCCATTGCTATTTCTGTCGGAATCGTCACTCTCGGAATGCTCTCTGCTTTCGCATTCTTTCTCTATCGTCACCGCGCCAAACATCCCGGAGATTCACAGAAACTTGTCGGAGGAACTCAGGGTGGTAGAATTCATGAAGATTCCAGAGCACCGGCCTCCAGTTATTTCTACATCGGAACCGTCGAACCACCGACCCAGACGGAACAGAATCATTCTCCATATCGGAAATTGAATTCACTGAAAGCATCGGATCGGTATCGTCCCAGCCCTGAATTACAACCACTCCCTCCTCTTCCAAAACCACATACATCTCCTCCTCCCCCTTTGTCTTCTTCTGATGACGAGACTCATGATACCGCATTTCACACTCCACAGCGCTCCTCCGTTCTTAGTTACGATGACGCTTATTACTCACCCGTTTCTCGTCAAACTAATTCCGTTAAATCTTCCAATTCTAATTCCAATTCCAATTCCAATTCCAATTCCATTCCTCCTATTGTTCCTCATTCTAAAAGGACTTCTCCTAAATCAAGGTTTTCGGCTTCTTCCACAAAGCGGCCTCCGCCTCCGCCTCCACCACCGCCACCACCACCGCCTCCGCCTCCAATAGCTCACCTTCCTCAAATTCCGAATTCTCAAGAAACATTGCCTTTCTCATCCATCAGACCTAAATTTTCAAACCCTCCCCCTCCCCCTAATTTAGCGCTTCTTCAAACAATAAGCAACTCAGCCGCATTTCTCAAAACTACTGCTCCACCTCCACCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCACCACCACCACTTTCGCATACGACGCCACCGAATCTAAAGTCGTCAGAAACGAGAATATCTACAGTGACTCCAACAAAATCCTCTGAGCAAACTGCAAGACGGAATTCACTCTCTGCTACTGCTTCTGGAACATCAAATTTTATCAAAGAAGATGTGGTTGATCGGAGCATTAGTTCTTCGGAGAGGCTTGAAGCAGACGATATGGAAGGAGCAAAACCGAGGTTGAAGCCTTTGCATTGGGACAAAGTACGGGCAACGTCAGACCGAGCTACTGTATGGGATCAACTCAAATCAAGCTCATTCCAATTAAATGAGGATATGATGGAGACACTTTTCGGTTTCAATTCTGCGAGTTCTGTTCCAAAAGAGGCTACCCGAAAGTCCGTTCTTCCTCCTGTTGAGAAGGAAAATAGGGTGTTAGACCCAAAGAAATCTCAGAACATAGCAATACTACTAAGAGCACTTAATGTCACCCGCGATGAGGTGATTGAAGCTCTTCAAGATGGTAATCCTGAAGGCTTTGGTACTGAGCTTTTAGAAACTCTTGTGAAGATGGCTCCAACAAAAGAGGAAGAAATAAAACTGAGAGAGTACTGTGGTGATATGTCTAAACTAGGGTCTGCAGAACGATTTCTCAAGGCAGTGCTTGAAGTCCCATTTGCCTTTAGAAGAGTTGAAGCCATGCTGTACAGAGCCAATTTTGATGCGGAAGTGAAGTACCTGATGAAGTCTTTTCAAACCCTAGAGGCTGCAAGTGAAGAATTAAAGAACAGCAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTTAAGACGGGAAATAGGATGAATGTCGGTACAAATCGCGGCGATGCTAAATCCTTTAAGCTTGAAACGCTCTTAAAACTAGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTTCATTTTGTTGTCCAAGAAATTATCAGATCGGAAGGTGGCTCTGATACAACCAATGACAACCTTCAAAATAAAACGCAATCCAAAATCGATGACGAATTTAAGAAGCAGGGCTTGAAGGTTGTTGCTGGACTAAGCAGAGACCTGAGTAATGTCAAAAAAGCGGCTGGTATGGACTCCGACGTATTGAGCAGTTATGTCATGAAGTTGGAAATGGGGCTCGAAAAAGTAAGATTGGTTTTACAGTTTGAGAAGCCAGGAATGCAGGGAAAGTTCTTTGACTCAATGAAACTATTTTTGAAAGAGGCGGAAGAGGAAATAGTTAAGATCAAGGCTGATGAAAGAAAAGCTTTATCGCTTGTGAAAGGCGTCACAGAATATTTCCATGGGGATGCTGCGAAGGAAGAAGCTCATCCGTTCAGAATTTTTATGATTGTTAGGGATTTCCTGAGCATACTGGATCAAGTGTGCAAGGAAGTAGGGAGGATGCAGGATGGAATAATGGTGGGTGCTGCAAGATCCTTTCGAATATCAGCGACAGCCTCACTTCCAGTACTAAGCAGGTATAATATCAGACAAGATCATAGTTCGGACGAAGATAGCTTATCGTCGTGA 2655 44.97 MNAHHLSFVLFLSFSFSFIRGLPLFPNRRILHQPLFPVASQPPPEFDIPPPPPPPEQGGGEEEPFFHELPNGATPDQSQPQSSATNGNGSMPIPAATQTSNKPTKTLAIAISVGIVTLGMLSAFAFFLYRHRAKHPGDSQKLVGGTQGGRIHEDSRAPASSYFYIGTVEPPTQTEQNHSPYRKLNSLKASDRYRPSPELQPLPPLPKPHTSPPPPLSSSDDETHDTAFHTPQRSSVLSYDDAYYSPVSRQTNSVKSSNSNSNSNSNSNSIPPIVPHSKRTSPKSRFSASSTKRPPPPPPPPPPPPPPPPIAHLPQIPNSQETLPFSSIRPKFSNPPPPPNLALLQTISNSAAFLKTTAPPPPPPPPPPPPPPPPPPLSHTTPPNLKSSETRISTVTPTKSSEQTARRNSLSATASGTSNFIKEDVVDRSISSSERLEADDMEGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSASSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDMSKLGSAERFLKAVLEVPFAFRRVEAMLYRANFDAEVKYLMKSFQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKSFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGSDTTNDNLQNKTQSKIDDEFKKQGLKVVAGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQFEKPGMQGKFFDSMKLFLKEAEEEIVKIKADERKALSLVKGVTEYFHGDAAKEEAHPFRIFMIVRDFLSILDQVCKEVGRMQDGIMVGAARSFRISATASLPVLSRYNIRQDHSSDEDSLSS 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 941933 945538 - evm.model.ptg000010l.1482 HCH2g0022 539247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0022 884 MobiDBLite consensus disorder prediction 229 290 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 382 416 - -
HCH2g0022 884 SMART it6_source 438 848 IPR015425 -
HCH2g0022 884 MobiDBLite consensus disorder prediction 136 157 - -
HCH2g0022 884 PANTHER FORMIN-RELATED 334 878 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
HCH2g0022 884 MobiDBLite consensus disorder prediction 291 314 - -
HCH2g0022 884 SUPERFAMILY Formin homology 2 domain (FH2 domain) 451 844 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 41 102 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 356 381 - -
HCH2g0022 884 Pfam Formin Homology 2 Domain 444 833 IPR015425 -
HCH2g0022 884 ProSiteProfiles Formin homology-2 (FH2) domain profile. 438 859 IPR015425 -
HCH2g0022 884 MobiDBLite consensus disorder prediction 315 329 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 197 215 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 72 102 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 189 416 - -
HCH2g0022 884 Gene3D Formin, FH2 domain 434 844 IPR042201 -
HCH2g0022 884 Coils Coil 780 800 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 41 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1149 HCH-Chr12:9578757 HCH2g0022 HCH-Chr2:941933 2.50E-99 dispersed
HCH2g0022 HCH-Chr2:941933 HCH5g0214 HCH-Chr5:1215988 4.60E-140 dispersed
HCH2g0022 HCH-Chr2:941933 HCH2g0759 HCH-Chr2:51235032 1.20E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0022 K28090 - csv:101208011 1130.93