Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0022 ATGAATGCTCATCATTTGAGCTTCGTTTTATTTCTTTCTTTCTCTTTTTCATTCATCCGAGGATTACCCCTTTTTCCCAACCGAAGAATTCTCCATCAACCACTCTTTCCGGTCGCCTCCCAACCACCACCGGAGTTCGACATTCCGCCTCCTCCTCCTCCACCAGAACAAGGAGGAGGAGAAGAAGAACCGTTTTTTCACGAACTGCCAAATGGAGCGACTCCAGATCAGAGTCAACCACAGAGTTCAGCTACTAATGGAAATGGAAGCATGCCAATCCCAGCCGCTACTCAAACCTCTAATAAACCCACTAAAACCCTCGCCATTGCTATTTCTGTCGGAATCGTCACTCTCGGAATGCTCTCTGCTTTCGCATTCTTTCTCTATCGTCACCGCGCCAAACATCCCGGAGATTCACAGAAACTTGTCGGAGGAACTCAGGGTGGTAGAATTCATGAAGATTCCAGAGCACCGGCCTCCAGTTATTTCTACATCGGAACCGTCGAACCACCGACCCAGACGGAACAGAATCATTCTCCATATCGGAAATTGAATTCACTGAAAGCATCGGATCGGTATCGTCCCAGCCCTGAATTACAACCACTCCCTCCTCTTCCAAAACCACATACATCTCCTCCTCCCCCTTTGTCTTCTTCTGATGACGAGACTCATGATACCGCATTTCACACTCCACAGCGCTCCTCCGTTCTTAGTTACGATGACGCTTATTACTCACCCGTTTCTCGTCAAACTAATTCCGTTAAATCTTCCAATTCTAATTCCAATTCCAATTCCAATTCCAATTCCATTCCTCCTATTGTTCCTCATTCTAAAAGGACTTCTCCTAAATCAAGGTTTTCGGCTTCTTCCACAAAGCGGCCTCCGCCTCCGCCTCCACCACCGCCACCACCACCGCCTCCGCCTCCAATAGCTCACCTTCCTCAAATTCCGAATTCTCAAGAAACATTGCCTTTCTCATCCATCAGACCTAAATTTTCAAACCCTCCCCCTCCCCCTAATTTAGCGCTTCTTCAAACAATAAGCAACTCAGCCGCATTTCTCAAAACTACTGCTCCACCTCCACCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCACCACCACCACTTTCGCATACGACGCCACCGAATCTAAAGTCGTCAGAAACGAGAATATCTACAGTGACTCCAACAAAATCCTCTGAGCAAACTGCAAGACGGAATTCACTCTCTGCTACTGCTTCTGGAACATCAAATTTTATCAAAGAAGATGTGGTTGATCGGAGCATTAGTTCTTCGGAGAGGCTTGAAGCAGACGATATGGAAGGAGCAAAACCGAGGTTGAAGCCTTTGCATTGGGACAAAGTACGGGCAACGTCAGACCGAGCTACTGTATGGGATCAACTCAAATCAAGCTCATTCCAATTAAATGAGGATATGATGGAGACACTTTTCGGTTTCAATTCTGCGAGTTCTGTTCCAAAAGAGGCTACCCGAAAGTCCGTTCTTCCTCCTGTTGAGAAGGAAAATAGGGTGTTAGACCCAAAGAAATCTCAGAACATAGCAATACTACTAAGAGCACTTAATGTCACCCGCGATGAGGTGATTGAAGCTCTTCAAGATGGTAATCCTGAAGGCTTTGGTACTGAGCTTTTAGAAACTCTTGTGAAGATGGCTCCAACAAAAGAGGAAGAAATAAAACTGAGAGAGTACTGTGGTGATATGTCTAAACTAGGGTCTGCAGAACGATTTCTCAAGGCAGTGCTTGAAGTCCCATTTGCCTTTAGAAGAGTTGAAGCCATGCTGTACAGAGCCAATTTTGATGCGGAAGTGAAGTACCTGATGAAGTCTTTTCAAACCCTAGAGGCTGCAAGTGAAGAATTAAAGAACAGCAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTTAAGACGGGAAATAGGATGAATGTCGGTACAAATCGCGGCGATGCTAAATCCTTTAAGCTTGAAACGCTCTTAAAACTAGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTTCATTTTGTTGTCCAAGAAATTATCAGATCGGAAGGTGGCTCTGATACAACCAATGACAACCTTCAAAATAAAACGCAATCCAAAATCGATGACGAATTTAAGAAGCAGGGCTTGAAGGTTGTTGCTGGACTAAGCAGAGACCTGAGTAATGTCAAAAAAGCGGCTGGTATGGACTCCGACGTATTGAGCAGTTATGTCATGAAGTTGGAAATGGGGCTCGAAAAAGTAAGATTGGTTTTACAGTTTGAGAAGCCAGGAATGCAGGGAAAGTTCTTTGACTCAATGAAACTATTTTTGAAAGAGGCGGAAGAGGAAATAGTTAAGATCAAGGCTGATGAAAGAAAAGCTTTATCGCTTGTGAAAGGCGTCACAGAATATTTCCATGGGGATGCTGCGAAGGAAGAAGCTCATCCGTTCAGAATTTTTATGATTGTTAGGGATTTCCTGAGCATACTGGATCAAGTGTGCAAGGAAGTAGGGAGGATGCAGGATGGAATAATGGTGGGTGCTGCAAGATCCTTTCGAATATCAGCGACAGCCTCACTTCCAGTACTAAGCAGGTATAATATCAGACAAGATCATAGTTCGGACGAAGATAGCTTATCGTCGTGA 2655 44.97 MNAHHLSFVLFLSFSFSFIRGLPLFPNRRILHQPLFPVASQPPPEFDIPPPPPPPEQGGGEEEPFFHELPNGATPDQSQPQSSATNGNGSMPIPAATQTSNKPTKTLAIAISVGIVTLGMLSAFAFFLYRHRAKHPGDSQKLVGGTQGGRIHEDSRAPASSYFYIGTVEPPTQTEQNHSPYRKLNSLKASDRYRPSPELQPLPPLPKPHTSPPPPLSSSDDETHDTAFHTPQRSSVLSYDDAYYSPVSRQTNSVKSSNSNSNSNSNSNSIPPIVPHSKRTSPKSRFSASSTKRPPPPPPPPPPPPPPPPIAHLPQIPNSQETLPFSSIRPKFSNPPPPPNLALLQTISNSAAFLKTTAPPPPPPPPPPPPPPPPPPLSHTTPPNLKSSETRISTVTPTKSSEQTARRNSLSATASGTSNFIKEDVVDRSISSSERLEADDMEGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSASSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDMSKLGSAERFLKAVLEVPFAFRRVEAMLYRANFDAEVKYLMKSFQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKSFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGSDTTNDNLQNKTQSKIDDEFKKQGLKVVAGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQFEKPGMQGKFFDSMKLFLKEAEEEIVKIKADERKALSLVKGVTEYFHGDAAKEEAHPFRIFMIVRDFLSILDQVCKEVGRMQDGIMVGAARSFRISATASLPVLSRYNIRQDHSSDEDSLSS 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 941933 945538 - evm.model.ptg000010l.1482 HCH2g0022 539247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0022 884 MobiDBLite consensus disorder prediction 229 290 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 382 416 - -
HCH2g0022 884 SMART it6_source 438 848 IPR015425 -
HCH2g0022 884 MobiDBLite consensus disorder prediction 136 157 - -
HCH2g0022 884 PANTHER FORMIN-RELATED 334 878 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
HCH2g0022 884 MobiDBLite consensus disorder prediction 291 314 - -
HCH2g0022 884 SUPERFAMILY Formin homology 2 domain (FH2 domain) 451 844 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 41 102 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 356 381 - -
HCH2g0022 884 Pfam Formin Homology 2 Domain 444 833 IPR015425 -
HCH2g0022 884 ProSiteProfiles Formin homology-2 (FH2) domain profile. 438 859 IPR015425 -
HCH2g0022 884 MobiDBLite consensus disorder prediction 315 329 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 197 215 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 72 102 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 189 416 - -
HCH2g0022 884 Gene3D Formin, FH2 domain 434 844 IPR042201 -
HCH2g0022 884 Coils Coil 780 800 - -
HCH2g0022 884 MobiDBLite consensus disorder prediction 41 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0022 K28090 - - csv:101208011 1130.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1149 HCH-Chr12:9578757 HCH2g0022 HCH-Chr2:941933 2.50E-99 dispersed
HCH2g0022 HCH-Chr2:941933 HCH5g0214 HCH-Chr5:1215988 4.60E-140 dispersed
HCH2g0022 HCH-Chr2:941933 HCH2g0759 HCH-Chr2:51235032 1.20E-103 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH5g0214 . 190 1011 FH2 protein (formin) Gene Family AT3G25500 53.1 1.9e-196 683.3
HCH1g0118 . 420 891 FH2 protein (formin) Gene Family AT3G25500 65.3 6.6e-162 568.5
HCH2g0022 . 429 864 FH2 protein (formin) Gene Family AT3G25500 60.4 3.6e-139 493.0
HCH8g0107 . 526 927 FH2 protein (formin) Gene Family AT3G25500 50.8 1.7e-104 377.9
HCH5g0214 . 537 1030 FH2 protein (formin) Gene Family AT2G43800 57.5 9.1e-144 508.1
HCH2g0022 . 441 880 FH2 protein (formin) Gene Family AT2G43800 54.7 7.2e-125 445.3
HCH2g0759 . 221 558 FH2 protein (formin) Gene Family AT4G15200 53.5 7.0e-63 238.4
HCH12g1149 . 479 629 FH2 protein (formin) Gene Family AT4G15200 63.8 2.0e-49 193.7
HCH2g0759 . 419 878 FH2 protein (formin) Gene Family AT5G54650 66.7 2.2e-166 583.2
HCH5g0214 . 585 986 FH2 protein (formin) Gene Family AT5G54650 50.8 3.0e-102 370.2
HCH2g0022 . 27 884 FH2 protein (formin) Gene Family AT5G67470 54.5 4.0e-208 721.8
HCH1g0118 . 442 910 FH2 protein (formin) Gene Family AT5G67470 58.7 6.6e-134 475.3
HCH5g0214 . 589 1030 FH2 protein (formin) Gene Family AT5G67470 60.7 3.6e-132 469.5
HCH1g0992 . 334 810 FH2 protein (formin) Gene Family AT1G59910 50.2 2.1e-119 427.2
HCH4g1640 . 271 666 FH2 protein (formin) Gene Family AT1G59910 50.5 3.0e-105 380.2
HCH1g0992 . 135 806 FH2 protein (formin) Gene Family AT1G70140 51.2 6.1e-141 498.4
HCH2g0022 . 429 840 FH2 protein (formin) Gene Family AT3G05470 50.2 1.3e-105 381.3
HCH5g0222 . 943 1254 FH2 protein (formin) Gene Family AT1G42980 50.8 4.2e-69 258.5
HCH5g0222 . 1 1261 FH2 protein (formin) Gene Family AT1G31810 66.2 0.0e+00 1221.8
HCH8g1276 . 1311 1632 FH2 protein (formin) Gene Family AT5G07650 75.5 4.6e-131 465.7
HCH12g0414 . 1089 1410 FH2 protein (formin) Gene Family AT5G07650 64.6 2.4e-111 400.2
HCH8g0927 . 840 1159 FH2 protein (formin) Gene Family AT5G07650 62.0 8.4e-109 391.7
HCH5g0222 . 927 1258 FH2 protein (formin) Gene Family AT5G07650 59.6 4.6e-107 386.0
HCH8g1276 . 1238 1625 FH2 protein (formin) Gene Family AT5G07770 69.4 6.2e-141 498.0
HCH12g0414 . 1013 1403 FH2 protein (formin) Gene Family AT5G07770 58.9 5.1e-119 425.2
HCH5g0222 . 863 1252 FH2 protein (formin) Gene Family AT5G07770 56.3 2.6e-115 412.9
HCH8g0927 . 763 1151 FH2 protein (formin) Gene Family AT5G07770 56.1 4.5e-115 412.1
HCH12g0414 . 1005 1410 FH2 protein (formin) Gene Family AT3G32400 77.8 5.2e-173 604.4
HCH8g0927 . 770 1160 FH2 protein (formin) Gene Family AT3G32400 68.9 1.3e-147 520.0
HCH5g0222 . 863 1257 FH2 protein (formin) Gene Family AT3G32400 65.5 1.4e-141 500.0
HCH8g1276 . 1238 1632 FH2 protein (formin) Gene Family AT3G32400 64.7 2.0e-140 496.1
HCH12g0414 . 1 1410 FH2 protein (formin) Gene Family AT2G25050 51.6 0.0e+00 1153.7
HCH8g0927 . 1 1160 FH2 protein (formin) Gene Family AT2G25050 53.5 7.4e-295 1010.4
HCH8g1275 . 1 378 FH2 protein (formin) Gene Family AT2G25050 57.5 1.6e-124 444.5
HCH8g1276 . 1239 1632 FH2 protein (formin) Gene Family AT5G07780 63.0 2.7e-123 439.1
HCH12g0414 . 1014 1404 FH2 protein (formin) Gene Family AT5G07780 54.8 4.3e-105 378.6
HCH8g0927 . 770 1159 FH2 protein (formin) Gene Family AT5G07780 53.3 1.3e-101 367.1
HCH5g0222 . 864 1253 FH2 protein (formin) Gene Family AT5G07780 52.2 1.1e-100 364.0
HCH8g1276 . 1 1641 FH2 protein (formin) Gene Family AT5G07740 62.7 0.0e+00 1124.4
HCH8g1275 . 1 416 FH2 protein (formin) Gene Family AT5G07740 68.3 8.4e-164 575.5
HCH8g1276 . 1310 1639 FH2 protein (formin) Gene Family AT5G07760 74.7 8.0e-129 458.4
HCH12g0414 . 1088 1410 FH2 protein (formin) Gene Family AT5G07760 65.4 3.4e-111 399.8
HCH8g0927 . 839 1159 FH2 protein (formin) Gene Family AT5G07760 64.1 6.4e-110 395.6
HCH5g0222 . 937 1258 FH2 protein (formin) Gene Family AT5G07760 60.7 2.8e-105 380.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36