Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0046 ATGTGGGATCTCAACGATTCACCTGATGAATTTGAAACCTATTCATCTCCGAGAGCTGGGATTGAAGGTAACCCACCAGCTACAAGGCAGTTTTTTCCATTGGAAGACTCAGAAGCAACGGATTCTTTTCCTCGAGCTCGATGGGTGGGTGTCAAGTTTTGTCAAACGGAACCTCTTCGAATTGGAACTGTGAAATCGGTTGCGCTTTTGCATCCCGTCAAGAAAAGCCGCCGAGGACCCAGGTCTCGAAGCTCTCAGTATCGAGGCGTCACGTTTTATAGAAGAACTGGGAGATGGGAGTCTCATATATGGGACTGTGGAAAACAAGTTTATCTGGGTGGATTTGACACTGCACATGCTGCAGCTTGTGCATATGATAGGGCGGCTATAAAGTTTCGAGGAATAGAAGCGGATATAAATTTCAGTATTGAAGATTATGAAGAAGATTTGAAACAGATGGGGAATCTAACAAAGGAAGAATTTGTACATGTTCTTCGTAGACAAAGTACTGGTTATCCGAGAGGAAGTTCTAAATATAGAGGTGTAACCTTGCACAAGTGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTATGTTTATTTGGGTTTGTTCGATTCCGAAATCGAAGCTGCGAGAGCTTACGACAAAGCTGCGATTAAGAGTAATGGCAAAGAAGCTGTCACCAATTTTGATCCCAGCATATATGAGAATGAGCCTAATGCGACCGACCCATCAGACGATACCTCGGAACAAAATCTCGATTTGAGCTTGGGCAATTCAAGCTCAAAACATTGCTCAAATGATAGAACAAAAGCAGATTCGCATTCTAAGGAATCAAACACATTTGAAAATGATAATAGTAGAAGATATAGGTTCCCTGAGACAGAGAAAATGCAGTTTCTTGGCCAAACAAATCTTCATCCTCCATCCTCCATTGAAATGCCTAGATATGAGCAATTCAGGAGGCCTGAAGAGGCATATATCCATCACAATTACTCTCCCCACATTAATCAATCAAACTCTCAAGTTCAGTTGTTCAGCAGCAGCAATGGAGGACGAGAAGGAAGCGAAGAACTTTCGCTTTCTTTGAGCAAAGGACACCAATCGCGGTTCGATCGTTCTCAAGTACTATTAGCAACTGCTGCAGCATCATCAGGATTCTCACAGCTACCTTTTACAGCTTCCCAAAATTGGCTGCAGAAAAATTGA 1221 42.92 MWDLNDSPDEFETYSSPRAGIEGNPPATRQFFPLEDSEATDSFPRARWVGVKFCQTEPLRIGTVKSVALLHPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAACAYDRAAIKFRGIEADINFSIEDYEEDLKQMGNLTKEEFVHVLRRQSTGYPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKSNGKEAVTNFDPSIYENEPNATDPSDDTSEQNLDLSLGNSSSKHCSNDRTKADSHSKESNTFENDNSRRYRFPETEKMQFLGQTNLHPPSSIEMPRYEQFRRPEEAYIHHNYSPHINQSNSQVQLFSSSNGGREGSEELSLSLSKGHQSRFDRSQVLLATAAASSGFSQLPFTASQNWLQKN 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3409429 3411702 + evm.model.ptg000010l.1458 HCH2g0046 539271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0046 406 MobiDBLite consensus disorder prediction 270 292 - -
HCH2g0046 406 SUPERFAMILY DNA-binding domain 177 237 IPR016177 GO:0003677(InterPro)
HCH2g0046 406 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 63 308 - -
HCH2g0046 406 Pfam AP2 domain 177 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0046 406 Pfam AP2 domain 86 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0046 406 PRINTS Ethylene responsive element binding protein signature 217 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0046 406 PRINTS Ethylene responsive element binding protein signature 179 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0046 406 FunFam AP2-like ethylene-responsive transcription factor 177 237 - -
HCH2g0046 406 ProSiteProfiles AP2/ERF domain profile. 178 235 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0046 406 MobiDBLite consensus disorder prediction 237 269 - -
HCH2g0046 406 CDD AP2 177 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0046 406 SUPERFAMILY DNA-binding domain 85 143 IPR016177 GO:0003677(InterPro)
HCH2g0046 406 CDD AP2 86 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0046 406 MobiDBLite consensus disorder prediction 1 25 - -
HCH2g0046 406 FunFam AP2-like ethylene-responsive transcription factor 85 144 - -
HCH2g0046 406 ProSiteProfiles AP2/ERF domain profile. 86 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0046 406 MobiDBLite consensus disorder prediction 234 292 - -
HCH2g0046 406 SMART rav1_2 178 241 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0046 406 SMART rav1_2 86 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0046 406 Gene3D AP2/ERF domain 85 144 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0046 406 Gene3D AP2/ERF domain 177 236 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0521 HCH-Chr1:54130940 HCH2g0046 HCH-Chr2:3409429 3.90E-61 dispersed
HCH2g0046 HCH-Chr2:3409429 HCH9g0608 HCH-Chr9:4070787 5.70E-85 dispersed
HCH14g0298 HCH-Chr14:31567071 HCH2g0046 HCH-Chr2:3409429 7.70E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33121 PF00847 AP2 8.10E-10 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0046 K09284 - csv:101208665 493.426