Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0050 ATGACGGACGAGCAGCCCTCGATCGGTAGTCGGCGGAGAAGCCGAGGAGCTGAGGCAGCTGCCCGCAATGAAGCTCTTCAACGCCTTAAAGCCATCCGCAGCGGCGCCCGTCGCTCTGAAGCCGGTAACTTCCAAATTAAGTTGGAAAACCCTATCTACGATACAATTCCCGAAGAAGAATACGATGCTCTTGTCGCCAAACGTCGCGAAGAAGCCCGAGGATTTATCGTTGACGACGACGGTCTTGGGTATGGAGATGAAGGGGAGGAAGAGGATTGGTCCAAAGCTGGATTTCTTTCCTCTGACGAATCTGATGGTGAAATTGAGAAATCTAAGAAGAGGAAAGGAGAGAAAAAGGATTCTATACCCAAAAAGCCCTCGGCTTCTTCCAATTCACTCTCGGCTGCGGCAGCAATGATGGGCAAACAGAAGCTTTCTTTGATGTTTACCTCCTCCAACTTTAGGAAAACGAGTAAAGATGAAAAGGCCAAGGGGTTGAGTTGTGATAGTATTGTTGATGATGTGATTGCGGAATTTGCACCGGATGAAACGGATAGAGAGAGGCGTAGGAAGGGACTAATTGGAGGAGCTCTATCCGTTTCAAGGGCTTTTTCGCCGATTCCGGTTGTTAAGAGTGAAAAATTAACTTCTCAGATTGTTAATTCGATTGGTGGATCTGAATTGACTAAGGCTAATGTAAATGGGGATTATGAAATTACTAGAAAAGGAGATTTGGAACCTGTGCAAGCCGGTGTAGAGGTCAAGGAGAATGGTGATACTGAAAAAATTGAGGAAATGGAGGAATTAAATTCTAAATCAAATCTGGATCCAATTGTGAAATCACATAGTTCTTCAAACAATGAAGGTGTAATTGAAGTTGAGACGAAGACTGAACCGGTAATAAAGAAGGAGGCAGTTTGTACTTTAAATGCTAAGATTAATGAGGATAAAAACCCAGCATTGAGTGCTACTGCTGGATGGCAAGCAGTGAGAAGTGAAGGGAGTGGAAATATTGATTTTCCTGCAGAAATTTCTGAAGAGAAATCTGATTTCGACATTGATACGGATGGTTCTCTACCTTTCTATATAGTTGATGCTCATGAGGAGCTCTTTGGTGTAAATATGGGCACTGTGTATCTATTTGGAAAGGTCAAAGTTGGAGATACGTACCACAGTTGTTGTGTGGTGGTAAAAAATATGGAAAGATGTGTATATGCTATTCCAAATGCCTCTTTACTTCATTCAGATGAGATGTTGAGGCTTCAGAAAGATGCTGAACAGTCTCAGCTTTCTCCTTCAGATCTCCGTACAAAGCTGCAAGAAATGACTGCAGGATTAAAAAATGAAATCGCTAAGCAGTTGCTAGATCTCAATGTTTCAACATTTAGCATGACTCCCGTTAAGAGAAAATATGCATTTGAGCGACTTGACATACCTGCGGGGGAAAATTATGTACTTAAGATCAGTTATCCATATAAGTACCCCCCACTTCCTGCTGATTTAAAAGGAGAATCATTCTGCTCTCTTCTAGGTACACATCAGAGTGCCTTGGAGCTTTTCCTCGTTAAAAGAAAAATCAAGGGGCCATCGTGGCTGTTAATTTCAAAATTTTCTTCCCGTCCTAGTTCACAGAGAGTGAGCTGGTGCAAGTTTGAGGTGACAGTTGACTCTTCAAAAGACATACAAATTTCAACTTCATCAAGCAAAACTACGGAGATTCCTTCTATTGTTGTCAGTGCAATAAATATAAAGACCATCATCAATGAAAGGCATAACGTCAATGAAATCGTGTCTGCATCTGTTATTTGCTGTCAAAGAGTGAAGATTGACACTCCCATGTTGGCCACAGAATGGAAAAAACCTGGTATGCTTAGACATTTTACTATCATCCGTAAGCTTGAAGGAGGTATATTTCCCATGGGATTTACAAAAGAATCCACAGAAAGAAATTCAAAGGCTGGATCAAGTGTTTTAATCTGTGAGAGCAATGAAAGGGCTTTGTTGAATCGTTTAATGATTGAATTATTCAAATTGGATAGTGATGTGCTGGTTGGGCATAATATCTCTGGGTTCGACCTAGATGTCCTTCTTCATCGAGCCCAGTTTTGCAGAGTACCAAGCAGCATGTGGTCCAAAATAGGTCGCCTTAAGAGGTCTACTATGCCTAAACTTGGACAAGGAGGGAACATTTTTGGGTCTGGAGCAAGTCCAGGAATTATGTCTTGCATTGCTGGCCGACTCTTATGTGATACATACTTATCTTCCCGTGACCTATTGAAAGAGATTAGTTATTCTTTGACACAACTAGCAAAGACCCAGCTTAACAAGGACCGCAAGGAGGTCACTCCACATGACATTCCAAGAATGTTTCAAACATCAGAGTCTCTCATGGACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCAATGGAACTCATGTTTCATTTGAGTATTCTTCCTCTTACCCGTCAGCTAACTAATATCAGTGGTAATCTTTGGGGAAGAAGTCTACAAGGTGCTAGAGCCCAGAGAGTGGAGTATCTTTTACTTCATGCATTCCATGCTAGAAAGTATATTATTCCTGACAAGATTTCATCTTATGCTAAGGAAAAAAGGATAGTGAAAAAGAGAATGAAACATGGTTCTGAGGAGAATAATGTTGATGAAATTGGTTTAGATAATGCAAATTTAGAAGATGCCCGCAATACTGAAGGCGGAAAAGGCAAAAAAGGATCTTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGAGGTTTATATGATAAATATGTATTACTCCTGGACTTCAATAGTCTGTATCCTTCCATCATTCAGGAATATAATATTTGTTTCACCACTGTTGAAAGATCTCCAGATGGTGTGGTTCCTCGTCTGCCATCTAGTAAAATGACTGGAGTTCTTCCTGAGTTGCTAAAATCCCTAGTTCAGAGGAGACGAATGGTAAAGACATGGATGAAGAATGCATCTGGTCTTAAGCTCCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCAAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCCCTGGCAGAGCTTATTACTTCACAAGGAAGGGAGATATTGCAGAGCACTGTTGATCTTGTCCAGAATAATTTGAACTTAGAGGTAATCTATGGTGATACTGATTCAATAATGATTCATAGTGGACTGGATGATGTTGGTAAGGTGAAAGCAATTGCAGGAAAAGTAATACAAGAGGTGAATAAGAAGTACAAGTGTCTAGAAATTGATCTTGATGGTTTGTACAAGAGAATGCTGCTTCTTAAGAAAAAGAAATATGCAGCTGTAAAGTTGCAGTTCAAGGATGGGATGCCATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGGCGTGATTGGAGCTTATTGTCAAAGGAATTGGGTGATTTCTGCTTGAGTCAAATATTGTCTGGAGGGTCATGTGAGGATGTTGTTGAATCAATACATGACTCTCTTATGAAGATACAAGAGGATATGAGGAAAGGGCAAGTAGCACTTGAGAAATATATCATCACGAAGACGTTGACCAAGCCACCCGAAGCCTACCCTGATGCCAAAAACCAACCACATGTTCAAGTTGCACAAAGGTTAAAACAAATGGGTTATTCAACTGGCTGTTCTGTTGGTGATACAATCCCATATATAATTTGCTGCGAGCAGGGATCTACTTCTGGTGGTTCTACAGGCATTGCCCAGCGTGCTAGACATCCAGATGAATTAAAAAGAGAAGATGGAAAATGGATGATTGACATCGATTACTACCTGTCACAACAGATTCACCCCGTGGTCTCGCGTCTATGTGCTTCAATTCAGGGTACAAGCCCAGAACGCTTGGCTGACTGTTTGGGGCTTGACTCATCTAAGTTCCAAAACAAATCAATTGAAGTTTCCAAAAGCGATATCTCCTCTTCACTCTTGTATTCTATAAATGAAGAAGAAAGATATCAGGGCTGTCAACCCTTGATATTAACTTGTCCCAGCTGCTCTGGTACTTTTGAGTGTCCTGCTATATTTAGTTCTATATACAAACCAGCAAATGAAAAGCCAGAAAAGTCAATTATTGATGAGCCTAGGAGCAAATTTTGGAATAATTTGAATTGTCCTCAATGTCCTGACGAAGTCAACACGGTTAGAATGACTCCTGGAATGATTGCCAATCAGGTAAAAAGGCAGGCAGAGAGGTTCCTATCGATGTACTATAATGGTTTAATGATGTGTGAAGATGAAACATGCAAACACGCCACACGTGCTCTCAATCTTCGACTTGTTGGTGATTCTGAGAAAGGAACCGTCTGCCCAAACTACCCTCATTGTAATGGGCGTCTTATAAGAAAGTACACAGAGGCTGAATTGTACAAGCAGCTTTCATATTTCTGTTTTGTGTTGGATACTGAACGCTGTATGGAAAAGTTGGAGGTTCATGCGAGGTTGACACTGGAGAAGGAGATGACCGAAATTCGGCCAGTAGTTGAGTTGGCGGCATCAATAATTCATAGTATTCGAGATCGAAGCGCATATGGTTGGGTACAGTTGGAGGATTTAGTAGTTACATTTTAA 4635 41.17 MTDEQPSIGSRRRSRGAEAAARNEALQRLKAIRSGARRSEAGNFQIKLENPIYDTIPEEEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFLSSDESDGEIEKSKKRKGEKKDSIPKKPSASSNSLSAAAAMMGKQKLSLMFTSSNFRKTSKDEKAKGLSCDSIVDDVIAEFAPDETDRERRRKGLIGGALSVSRAFSPIPVVKSEKLTSQIVNSIGGSELTKANVNGDYEITRKGDLEPVQAGVEVKENGDTEKIEEMEELNSKSNLDPIVKSHSSSNNEGVIEVETKTEPVIKKEAVCTLNAKINEDKNPALSATAGWQAVRSEGSGNIDFPAEISEEKSDFDIDTDGSLPFYIVDAHEELFGVNMGTVYLFGKVKVGDTYHSCCVVVKNMERCVYAIPNASLLHSDEMLRLQKDAEQSQLSPSDLRTKLQEMTAGLKNEIAKQLLDLNVSTFSMTPVKRKYAFERLDIPAGENYVLKISYPYKYPPLPADLKGESFCSLLGTHQSALELFLVKRKIKGPSWLLISKFSSRPSSQRVSWCKFEVTVDSSKDIQISTSSSKTTEIPSIVVSAINIKTIINERHNVNEIVSASVICCQRVKIDTPMLATEWKKPGMLRHFTIIRKLEGGIFPMGFTKESTERNSKAGSSVLICESNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSTMPKLGQGGNIFGSGASPGIMSCIAGRLLCDTYLSSRDLLKEISYSLTQLAKTQLNKDRKEVTPHDIPRMFQTSESLMDLIEYGETDAWLSMELMFHLSILPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHARKYIIPDKISSYAKEKRIVKKRMKHGSEENNVDEIGLDNANLEDARNTEGGKGKKGSSYAGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVVPRLPSSKMTGVLPELLKSLVQRRRMVKTWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDVGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVVESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDAKNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSTGIAQRARHPDELKREDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKSIEVSKSDISSSLLYSINEEERYQGCQPLILTCPSCSGTFECPAIFSSIYKPANEKPEKSIIDEPRSKFWNNLNCPQCPDEVNTVRMTPGMIANQVKRQAERFLSMYYNGLMMCEDETCKHATRALNLRLVGDSEKGTVCPNYPHCNGRLIRKYTEAELYKQLSYFCFVLDTERCMEKLEVHARLTLEKEMTEIRPVVELAASIIHSIRDRSAYGWVQLEDLVVTF 1544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3630290 3648160 - evm.model.ptg000010l.1454 HCH2g0050 539275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0050 1544 Coils Coil 1089 1109 - -
HCH2g0050 1544 Gene3D - 574 890 IPR036397 GO:0003676(InterPro)
HCH2g0050 1544 Pfam DNA Polymerase alpha zinc finger 1334 1540 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
HCH2g0050 1544 Pfam DNA polymerase family B, exonuclease domain 515 767 IPR006133 -
HCH2g0050 1544 SUPERFAMILY DNA/RNA polymerases 857 1311 IPR043502 -
HCH2g0050 1544 Gene3D DNA Polymerase alpha, zinc finger 1334 1526 IPR038256 -
HCH2g0050 1544 Pfam DNA polymerase family B 834 1296 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
HCH2g0050 1544 Gene3D Helix hairpin bin 977 1021 - -
HCH2g0050 1544 Gene3D - 1139 1325 IPR042087 -
HCH2g0050 1544 MobiDBLite consensus disorder prediction 76 136 - -
HCH2g0050 1544 Gene3D - 401 527 - -
HCH2g0050 1544 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
HCH2g0050 1544 MobiDBLite consensus disorder prediction 1 22 - -
HCH2g0050 1544 FunFam DNA polymerase 1335 1530 - -
HCH2g0050 1544 FunFam DNA polymerase 973 1022 - -
HCH2g0050 1544 CDD POLBc_alpha 908 1311 IPR045846 GO:0003887(InterPro)|GO:1902975(InterPro)
HCH2g0050 1544 PRINTS DNA-directed DNA-polymerase family B signature 1008 1020 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH2g0050 1544 PRINTS DNA-directed DNA-polymerase family B signature 932 945 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH2g0050 1544 PRINTS DNA-directed DNA-polymerase family B signature 1061 1069 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH2g0050 1544 SUPERFAMILY Ribonuclease H-like 356 862 IPR012337 -
HCH2g0050 1544 FunFam DNA polymerase 401 527 - -
HCH2g0050 1544 NCBIfam DNA polymerase (pol2) 51 1293 - -
HCH2g0050 1544 Gene3D Palm domain of DNA polymerase 901 1125 IPR023211 -
HCH2g0050 1544 CDD DNA_polB_alpha_exo 574 825 - -
HCH2g0050 1544 ProSitePatterns DNA polymerase family B signature. 1063 1071 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
HCH2g0050 1544 SMART polmehr3 574 1075 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH2g0050 1544 FunFam DNA polymerase 1139 1325 - -
HCH2g0050 1544 MobiDBLite consensus disorder prediction 88 124 - -
HCH2g0050 1544 Gene3D - 361 560 - -
HCH2g0050 1544 MobiDBLite consensus disorder prediction 1 19 - -
HCH2g0050 1544 FunFam DNA polymerase 574 888 - -
HCH2g0050 1544 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1542 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0101 HCH-Chr14:19277072 HCH2g0050 HCH-Chr2:3630290 4.60E-49 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0050 K02320 - csv:101211201 2481.44