Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0050 ATGACGGACGAGCAGCCCTCGATCGGTAGTCGGCGGAGAAGCCGAGGAGCTGAGGCAGCTGCCCGCAATGAAGCTCTTCAACGCCTTAAAGCCATCCGCAGCGGCGCCCGTCGCTCTGAAGCCGGTAACTTCCAAATTAAGTTGGAAAACCCTATCTACGATACAATTCCCGAAGAAGAATACGATGCTCTTGTCGCCAAACGTCGCGAAGAAGCCCGAGGATTTATCGTTGACGACGACGGTCTTGGGTATGGAGATGAAGGGGAGGAAGAGGATTGGTCCAAAGCTGGATTTCTTTCCTCTGACGAATCTGATGGTGAAATTGAGAAATCTAAGAAGAGGAAAGGAGAGAAAAAGGATTCTATACCCAAAAAGCCCTCGGCTTCTTCCAATTCACTCTCGGCTGCGGCAGCAATGATGGGCAAACAGAAGCTTTCTTTGATGTTTACCTCCTCCAACTTTAGGAAAACGAGTAAAGATGAAAAGGCCAAGGGGTTGAGTTGTGATAGTATTGTTGATGATGTGATTGCGGAATTTGCACCGGATGAAACGGATAGAGAGAGGCGTAGGAAGGGACTAATTGGAGGAGCTCTATCCGTTTCAAGGGCTTTTTCGCCGATTCCGGTTGTTAAGAGTGAAAAATTAACTTCTCAGATTGTTAATTCGATTGGTGGATCTGAATTGACTAAGGCTAATGTAAATGGGGATTATGAAATTACTAGAAAAGGAGATTTGGAACCTGTGCAAGCCGGTGTAGAGGTCAAGGAGAATGGTGATACTGAAAAAATTGAGGAAATGGAGGAATTAAATTCTAAATCAAATCTGGATCCAATTGTGAAATCACATAGTTCTTCAAACAATGAAGGTGTAATTGAAGTTGAGACGAAGACTGAACCGGTAATAAAGAAGGAGGCAGTTTGTACTTTAAATGCTAAGATTAATGAGGATAAAAACCCAGCATTGAGTGCTACTGCTGGATGGCAAGCAGTGAGAAGTGAAGGGAGTGGAAATATTGATTTTCCTGCAGAAATTTCTGAAGAGAAATCTGATTTCGACATTGATACGGATGGTTCTCTACCTTTCTATATAGTTGATGCTCATGAGGAGCTCTTTGGTGTAAATATGGGCACTGTGTATCTATTTGGAAAGGTCAAAGTTGGAGATACGTACCACAGTTGTTGTGTGGTGGTAAAAAATATGGAAAGATGTGTATATGCTATTCCAAATGCCTCTTTACTTCATTCAGATGAGATGTTGAGGCTTCAGAAAGATGCTGAACAGTCTCAGCTTTCTCCTTCAGATCTCCGTACAAAGCTGCAAGAAATGACTGCAGGATTAAAAAATGAAATCGCTAAGCAGTTGCTAGATCTCAATGTTTCAACATTTAGCATGACTCCCGTTAAGAGAAAATATGCATTTGAGCGACTTGACATACCTGCGGGGGAAAATTATGTACTTAAGATCAGTTATCCATATAAGTACCCCCCACTTCCTGCTGATTTAAAAGGAGAATCATTCTGCTCTCTTCTAGGTACACATCAGAGTGCCTTGGAGCTTTTCCTCGTTAAAAGAAAAATCAAGGGGCCATCGTGGCTGTTAATTTCAAAATTTTCTTCCCGTCCTAGTTCACAGAGAGTGAGCTGGTGCAAGTTTGAGGTGACAGTTGACTCTTCAAAAGACATACAAATTTCAACTTCATCAAGCAAAACTACGGAGATTCCTTCTATTGTTGTCAGTGCAATAAATATAAAGACCATCATCAATGAAAGGCATAACGTCAATGAAATCGTGTCTGCATCTGTTATTTGCTGTCAAAGAGTGAAGATTGACACTCCCATGTTGGCCACAGAATGGAAAAAACCTGGTATGCTTAGACATTTTACTATCATCCGTAAGCTTGAAGGAGGTATATTTCCCATGGGATTTACAAAAGAATCCACAGAAAGAAATTCAAAGGCTGGATCAAGTGTTTTAATCTGTGAGAGCAATGAAAGGGCTTTGTTGAATCGTTTAATGATTGAATTATTCAAATTGGATAGTGATGTGCTGGTTGGGCATAATATCTCTGGGTTCGACCTAGATGTCCTTCTTCATCGAGCCCAGTTTTGCAGAGTACCAAGCAGCATGTGGTCCAAAATAGGTCGCCTTAAGAGGTCTACTATGCCTAAACTTGGACAAGGAGGGAACATTTTTGGGTCTGGAGCAAGTCCAGGAATTATGTCTTGCATTGCTGGCCGACTCTTATGTGATACATACTTATCTTCCCGTGACCTATTGAAAGAGATTAGTTATTCTTTGACACAACTAGCAAAGACCCAGCTTAACAAGGACCGCAAGGAGGTCACTCCACATGACATTCCAAGAATGTTTCAAACATCAGAGTCTCTCATGGACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCAATGGAACTCATGTTTCATTTGAGTATTCTTCCTCTTACCCGTCAGCTAACTAATATCAGTGGTAATCTTTGGGGAAGAAGTCTACAAGGTGCTAGAGCCCAGAGAGTGGAGTATCTTTTACTTCATGCATTCCATGCTAGAAAGTATATTATTCCTGACAAGATTTCATCTTATGCTAAGGAAAAAAGGATAGTGAAAAAGAGAATGAAACATGGTTCTGAGGAGAATAATGTTGATGAAATTGGTTTAGATAATGCAAATTTAGAAGATGCCCGCAATACTGAAGGCGGAAAAGGCAAAAAAGGATCTTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGAGGTTTATATGATAAATATGTATTACTCCTGGACTTCAATAGTCTGTATCCTTCCATCATTCAGGAATATAATATTTGTTTCACCACTGTTGAAAGATCTCCAGATGGTGTGGTTCCTCGTCTGCCATCTAGTAAAATGACTGGAGTTCTTCCTGAGTTGCTAAAATCCCTAGTTCAGAGGAGACGAATGGTAAAGACATGGATGAAGAATGCATCTGGTCTTAAGCTCCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCAAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCCCTGGCAGAGCTTATTACTTCACAAGGAAGGGAGATATTGCAGAGCACTGTTGATCTTGTCCAGAATAATTTGAACTTAGAGGTAATCTATGGTGATACTGATTCAATAATGATTCATAGTGGACTGGATGATGTTGGTAAGGTGAAAGCAATTGCAGGAAAAGTAATACAAGAGGTGAATAAGAAGTACAAGTGTCTAGAAATTGATCTTGATGGTTTGTACAAGAGAATGCTGCTTCTTAAGAAAAAGAAATATGCAGCTGTAAAGTTGCAGTTCAAGGATGGGATGCCATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGGCGTGATTGGAGCTTATTGTCAAAGGAATTGGGTGATTTCTGCTTGAGTCAAATATTGTCTGGAGGGTCATGTGAGGATGTTGTTGAATCAATACATGACTCTCTTATGAAGATACAAGAGGATATGAGGAAAGGGCAAGTAGCACTTGAGAAATATATCATCACGAAGACGTTGACCAAGCCACCCGAAGCCTACCCTGATGCCAAAAACCAACCACATGTTCAAGTTGCACAAAGGTTAAAACAAATGGGTTATTCAACTGGCTGTTCTGTTGGTGATACAATCCCATATATAATTTGCTGCGAGCAGGGATCTACTTCTGGTGGTTCTACAGGCATTGCCCAGCGTGCTAGACATCCAGATGAATTAAAAAGAGAAGATGGAAAATGGATGATTGACATCGATTACTACCTGTCACAACAGATTCACCCCGTGGTCTCGCGTCTATGTGCTTCAATTCAGGGTACAAGCCCAGAACGCTTGGCTGACTGTTTGGGGCTTGACTCATCTAAGTTCCAAAACAAATCAATTGAAGTTTCCAAAAGCGATATCTCCTCTTCACTCTTGTATTCTATAAATGAAGAAGAAAGATATCAGGGCTGTCAACCCTTGATATTAACTTGTCCCAGCTGCTCTGGTACTTTTGAGTGTCCTGCTATATTTAGTTCTATATACAAACCAGCAAATGAAAAGCCAGAAAAGTCAATTATTGATGAGCCTAGGAGCAAATTTTGGAATAATTTGAATTGTCCTCAATGTCCTGACGAAGTCAACACGGTTAGAATGACTCCTGGAATGATTGCCAATCAGGTAAAAAGGCAGGCAGAGAGGTTCCTATCGATGTACTATAATGGTTTAATGATGTGTGAAGATGAAACATGCAAACACGCCACACGTGCTCTCAATCTTCGACTTGTTGGTGATTCTGAGAAAGGAACCGTCTGCCCAAACTACCCTCATTGTAATGGGCGTCTTATAAGAAAGTACACAGAGGCTGAATTGTACAAGCAGCTTTCATATTTCTGTTTTGTGTTGGATACTGAACGCTGTATGGAAAAGTTGGAGGTTCATGCGAGGTTGACACTGGAGAAGGAGATGACCGAAATTCGGCCAGTAGTTGAGTTGGCGGCATCAATAATTCATAGTATTCGAGATCGAAGCGCATATGGTTGGGTACAGTTGGAGGATTTAGTAGTTACATTTTAA 4635 41.17 MTDEQPSIGSRRRSRGAEAAARNEALQRLKAIRSGARRSEAGNFQIKLENPIYDTIPEEEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFLSSDESDGEIEKSKKRKGEKKDSIPKKPSASSNSLSAAAAMMGKQKLSLMFTSSNFRKTSKDEKAKGLSCDSIVDDVIAEFAPDETDRERRRKGLIGGALSVSRAFSPIPVVKSEKLTSQIVNSIGGSELTKANVNGDYEITRKGDLEPVQAGVEVKENGDTEKIEEMEELNSKSNLDPIVKSHSSSNNEGVIEVETKTEPVIKKEAVCTLNAKINEDKNPALSATAGWQAVRSEGSGNIDFPAEISEEKSDFDIDTDGSLPFYIVDAHEELFGVNMGTVYLFGKVKVGDTYHSCCVVVKNMERCVYAIPNASLLHSDEMLRLQKDAEQSQLSPSDLRTKLQEMTAGLKNEIAKQLLDLNVSTFSMTPVKRKYAFERLDIPAGENYVLKISYPYKYPPLPADLKGESFCSLLGTHQSALELFLVKRKIKGPSWLLISKFSSRPSSQRVSWCKFEVTVDSSKDIQISTSSSKTTEIPSIVVSAINIKTIINERHNVNEIVSASVICCQRVKIDTPMLATEWKKPGMLRHFTIIRKLEGGIFPMGFTKESTERNSKAGSSVLICESNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSTMPKLGQGGNIFGSGASPGIMSCIAGRLLCDTYLSSRDLLKEISYSLTQLAKTQLNKDRKEVTPHDIPRMFQTSESLMDLIEYGETDAWLSMELMFHLSILPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHARKYIIPDKISSYAKEKRIVKKRMKHGSEENNVDEIGLDNANLEDARNTEGGKGKKGSSYAGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVVPRLPSSKMTGVLPELLKSLVQRRRMVKTWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDVGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVVESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDAKNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSTGIAQRARHPDELKREDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKSIEVSKSDISSSLLYSINEEERYQGCQPLILTCPSCSGTFECPAIFSSIYKPANEKPEKSIIDEPRSKFWNNLNCPQCPDEVNTVRMTPGMIANQVKRQAERFLSMYYNGLMMCEDETCKHATRALNLRLVGDSEKGTVCPNYPHCNGRLIRKYTEAELYKQLSYFCFVLDTERCMEKLEVHARLTLEKEMTEIRPVVELAASIIHSIRDRSAYGWVQLEDLVVTF 1544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3630290 3648160 - evm.model.ptg000010l.1454 HCH2g0050 539275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0050 1544 Coils Coil 1089 1109 - -
HCH2g0050 1544 Gene3D - 574 890 IPR036397 GO:0003676(InterPro)
HCH2g0050 1544 Pfam DNA Polymerase alpha zinc finger 1334 1540 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
HCH2g0050 1544 Pfam DNA polymerase family B, exonuclease domain 515 767 IPR006133 -
HCH2g0050 1544 SUPERFAMILY DNA/RNA polymerases 857 1311 IPR043502 -
HCH2g0050 1544 Gene3D DNA Polymerase alpha, zinc finger 1334 1526 IPR038256 -
HCH2g0050 1544 Pfam DNA polymerase family B 834 1296 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
HCH2g0050 1544 Gene3D Helix hairpin bin 977 1021 - -
HCH2g0050 1544 Gene3D - 1139 1325 IPR042087 -
HCH2g0050 1544 MobiDBLite consensus disorder prediction 76 136 - -
HCH2g0050 1544 Gene3D - 401 527 - -
HCH2g0050 1544 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
HCH2g0050 1544 MobiDBLite consensus disorder prediction 1 22 - -
HCH2g0050 1544 FunFam DNA polymerase 1335 1530 - -
HCH2g0050 1544 FunFam DNA polymerase 973 1022 - -
HCH2g0050 1544 CDD POLBc_alpha 908 1311 IPR045846 GO:0003887(InterPro)|GO:1902975(InterPro)
HCH2g0050 1544 PRINTS DNA-directed DNA-polymerase family B signature 1008 1020 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH2g0050 1544 PRINTS DNA-directed DNA-polymerase family B signature 932 945 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH2g0050 1544 PRINTS DNA-directed DNA-polymerase family B signature 1061 1069 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH2g0050 1544 SUPERFAMILY Ribonuclease H-like 356 862 IPR012337 -
HCH2g0050 1544 FunFam DNA polymerase 401 527 - -
HCH2g0050 1544 NCBIfam DNA polymerase (pol2) 51 1293 - -
HCH2g0050 1544 Gene3D Palm domain of DNA polymerase 901 1125 IPR023211 -
HCH2g0050 1544 CDD DNA_polB_alpha_exo 574 825 - -
HCH2g0050 1544 ProSitePatterns DNA polymerase family B signature. 1063 1071 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
HCH2g0050 1544 SMART polmehr3 574 1075 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH2g0050 1544 FunFam DNA polymerase 1139 1325 - -
HCH2g0050 1544 MobiDBLite consensus disorder prediction 88 124 - -
HCH2g0050 1544 Gene3D - 361 560 - -
HCH2g0050 1544 MobiDBLite consensus disorder prediction 1 19 - -
HCH2g0050 1544 FunFam DNA polymerase 574 888 - -
HCH2g0050 1544 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1542 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0050 K02320 - - csv:101211201 2481.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0101 HCH-Chr14:19277072 HCH2g0050 HCH-Chr2:3630290 4.60E-49 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0450 . 2 864 Core DNA Replication Machinery Family AT4G14700 60.8 3.0e-287 984.6
HCH8g0450 . 1 864 Core DNA Replication Machinery Family AT4G12620 61.8 6.9e-292 1000.0
HCH4g0661 . 2 361 Core DNA Replication Machinery Family AT2G37560 68.3 3.9e-143 504.6
HCH13g1125 . 1 511 Core DNA Replication Machinery Family AT4G29910 57.9 6.1e-170 594.3
HCH4g0881 . 1 274 Core DNA Replication Machinery Family AT1G26840 66.4 3.5e-97 351.7
HCH7g0032 . 1 807 Core DNA Replication Machinery Family AT1G79150 57.5 2.6e-246 848.6
HCH5g1143 . 4 929 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1352.8
HCH14g1057 . 1 578 Core DNA Replication Machinery Family AT5G46280 80.1 2.2e-268 921.4
HCH7g0533 . 1 843 Core DNA Replication Machinery Family AT2G16440 72.7 0.0e+00 1184.5
HCH10g0354 . 1 737 Core DNA Replication Machinery Family AT2G07690 76.9 0.0e+00 1097.8
HCH14g1202 . 6 829 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1169.8
HCH4g1075 . 11 722 Core DNA Replication Machinery Family AT4G02060 84.3 0.0e+00 1204.9
HCH2g1033 . 39 523 Core DNA Replication Machinery Family AT2G29680 58.8 1.3e-158 556.6
HCH2g1033 . 27 484 Core DNA Replication Machinery Family AT1G07270 59.0 2.0e-142 502.7
HCH5g1013 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 6.7e-260 893.3
HCH11g0249 . 27 821 Core DNA Replication Machinery Family AT3G09660 71.1 0.0e+00 1083.2
HCH4g1702 . 6 474 Core DNA Replication Machinery Family AT2G14050 77.9 5.1e-213 737.6
HCH2g0555 . 6 408 Core DNA Replication Machinery Family AT2G20980 55.8 1.4e-117 419.9
HCH12g0839 . 2 971 Core DNA Replication Machinery Family AT1G77320 50.8 1.8e-265 912.5
HCH4g1324 . 1 199 Core DNA Replication Machinery Family AT1G80190 69.3 2.0e-78 288.9
HCH11g0967 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 9.8e-59 223.0
HCH13g0552 . 1 184 Core DNA Replication Machinery Family AT1G19080 65.8 1.1e-64 243.0
HCH13g0552 . 1 184 Core DNA Replication Machinery Family AT3G55490 65.8 1.1e-64 243.0
HCH7g1637 . 15 162 Core DNA Replication Machinery Family AT5G49010 63.3 4.0e-49 191.4
HCH2g0050 . 11 1542 Core DNA Replication Machinery Family AT5G67100 61.6 0.0e+00 1795.8
HCH6g1471 . 2 621 Core DNA Replication Machinery Family AT1G67630 62.0 1.3e-221 766.1
HCH10g0085 . 1 446 Core DNA Replication Machinery Family AT1G67320 65.3 9.0e-186 646.7
HCH6g1260 . 1 453 Core DNA Replication Machinery Family AT5G41880 64.0 1.3e-175 612.8
HCH14g0101 . 17 1087 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1769.6
HCH11g0564 . 1 441 Core DNA Replication Machinery Family AT2G42120 77.6 9.2e-206 713.0
HCH10g0085 . 1 446 Core DNA Replication Machinery Family AT1G67320 65.3 9.0e-186 646.7
HCH2g1255 . 1 2101 Core DNA Replication Machinery Family AT1G08260 70.9 0.0e+00 2978.3
HCH2g1255 . 24 2208 Core DNA Replication Machinery Family AT2G27120 67.9 0.0e+00 2946.8
HCH2g1306 . 1 938 Core DNA Replication Machinery Family AT5G22010 64.1 1.4e-309 1058.9
HCH6g0944 . 1 332 Core DNA Replication Machinery Family AT1G63160 91.0 7.0e-174 606.7
HCH9g0927 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.9 1.5e-179 625.5
HCH12g0832 . 1 334 Core DNA Replication Machinery Family AT1G21690 80.9 4.0e-153 537.7
HCH13g0142 . 1 354 Core DNA Replication Machinery Family AT1G77470 76.4 4.4e-153 537.7
HCH10g0561 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.8 3.9e-255 877.5
HCH6g1164 . 33 698 Core DNA Replication Machinery Family AT2G06510 53.0 2.0e-203 705.7
HCH8g1241 . 1 623 Core DNA Replication Machinery Family AT5G08020 71.6 3.1e-257 884.4
HCH6g1164 . 7 731 Core DNA Replication Machinery Family AT5G45400 55.0 4.8e-227 784.6
HCH8g1241 . 1 623 Core DNA Replication Machinery Family AT5G61000 69.3 2.1e-251 865.1
HCH6g1164 . 7 731 Core DNA Replication Machinery Family AT4G19130 58.6 1.1e-233 806.6
HCH8g0012 . 1 359 Core DNA Replication Machinery Family AT5G26680 87.7 1.3e-180 629.4
HCH7g1488 . 1 1110 Core DNA Replication Machinery Family AT1G08840 54.2 2.0e-312 1068.5
HCH2g1211 . 145 781 Core DNA Replication Machinery Family AT1G08130 77.1 1.0e-292 1002.7
HCH2g1211 . 181 781 Core DNA Replication Machinery Family AT1G49250 68.3 1.9e-239 825.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009628 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 32