Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0055 | ATGGAGTGGATTCGAGGAGATAAATTGGGTCATGGAAGCTTTTCCACGATCAATTTGGCGATACCAAAAAAGGGAATGGTTCAATTTCCTCCATTAATGGCTGTGAAATCATCAGATGTTATTTCCTCTGCTTTTCTCAAGAACGAAAAACGAATTTTGGATGAAATCGGAACGTCCCCCCATATCATTAACTGTTTCGAAGATAGCTACACAATTGAAACAAACGGAGAGAAGCTTTACAATCTTCTTTTGGAGTACGCCGGAGGAGGAAGTCTCTCAGATAAAATTAAAAATCACGGTGGCCGGATACCGGAACCCGATATCCGTCGTCACACCGCGGAGATTCTTCATGGGCTACGACATATTCACTGCAATGGGTTTGTTCATTGTGATATAAAGCCTGCGAATATATTAGTTTTTGAAAACGGAAATATAAAGATTGCTGATTTTGGGTTGGCGAAGAAGGCAGGGAAAATCAGAGTGGAAACAGGGGAAAGGTTTGAATGGAGAGGAACTCCTCTTTATATGTCTCCAGAATCAATCAATGATAATGAATATGAATCACCGTGTGATATTTGGTCTCTTGGTTGTGCCGTCGTTGAGATGTTCACCGGAAAACCTGCTTGGAATTTGAAGCCGGAAACGAATATTTACGCCTTAATGATCCGAATTGGAGTCGGAGACGATGTTCCGTTACTGCCGGAAAATATGTCGGATGAGGGGAAGGATTTTCTCCGGAAGTGTTTTGTGAAAGATCCGAGTAGAAGATGGACGGCTGAGATGCTTTTGAATCACCCGTTTGTTGCCGGAGATACTGTTCCATTGAAGAAAACAGAACAAGAACAGAGTGTGGTGGTGTCTCCGACAGGTCCTTTTGATTTTCCGGATTTTCTCTCTCTCCCAACAAAACATTCTGGGAATCCTTCGGATGATGATTCGTGTTTTTGTTCCTCGAGGTTTGTTTGTGATTTTGCCATGAGTAGGCTCCGGCAGCTTGTGTCCGAGAGACCGTTGGATTGGTCAGTTTCTGATAGTTGGGTCACAGTCAGGTGA | 1053 | 43.21 | MEWIRGDKLGHGSFSTINLAIPKKGMVQFPPLMAVKSSDVISSAFLKNEKRILDEIGTSPHIINCFEDSYTIETNGEKLYNLLLEYAGGGSLSDKIKNHGGRIPEPDIRRHTAEILHGLRHIHCNGFVHCDIKPANILVFENGNIKIADFGLAKKAGKIRVETGERFEWRGTPLYMSPESINDNEYESPCDIWSLGCAVVEMFTGKPAWNLKPETNIYALMIRIGVGDDVPLLPENMSDEGKDFLRKCFVKDPSRRWTAEMLLNHPFVAGDTVPLKKTEQEQSVVVSPTGPFDFPDFLSLPTKHSGNPSDDDSCFCSSRFVCDFAMSRLRQLVSERPLDWSVSDSWVTVR | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3897514 | 3898566 | + | evm.model.ptg000010l.1449 | HCH2g0055 | 539280 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0055 | 350 | CDD | STKc_MAPKKK | 2 | 268 | - | - | |
HCH2g0055 | 350 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 290 | - | - | |
HCH2g0055 | 350 | ProSiteProfiles | Protein kinase domain profile. | 3 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g0055 | 350 | SMART | serkin_6 | 3 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g0055 | 350 | Pfam | Protein kinase domain | 6 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g0055 | 350 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 36 | IPR017441 | GO:0005524(InterPro) | |
HCH2g0055 | 350 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 127 | 139 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH2g0055 | 350 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 289 | IPR011009 | - | |
HCH2g0055 | 350 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 269 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0055 | HCH-Chr2:3897514 | HCH6g0309 | HCH-Chr6:4569118 | 3.40E-62 | dispersed | |
HCH2g1332 | HCH-Chr2:55307724 | HCH2g0055 | HCH-Chr2:3897514 | 7.40E-11 | transposed | |
HCH14g0287 | HCH-Chr14:31273408 | HCH2g0055 | HCH-Chr2:3897514 | 1.60E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81307 | PF00069 | Pkinase | 3.10E-54 | CL0016 | HCH | PK |
Pathway information
