Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0055 ATGGAGTGGATTCGAGGAGATAAATTGGGTCATGGAAGCTTTTCCACGATCAATTTGGCGATACCAAAAAAGGGAATGGTTCAATTTCCTCCATTAATGGCTGTGAAATCATCAGATGTTATTTCCTCTGCTTTTCTCAAGAACGAAAAACGAATTTTGGATGAAATCGGAACGTCCCCCCATATCATTAACTGTTTCGAAGATAGCTACACAATTGAAACAAACGGAGAGAAGCTTTACAATCTTCTTTTGGAGTACGCCGGAGGAGGAAGTCTCTCAGATAAAATTAAAAATCACGGTGGCCGGATACCGGAACCCGATATCCGTCGTCACACCGCGGAGATTCTTCATGGGCTACGACATATTCACTGCAATGGGTTTGTTCATTGTGATATAAAGCCTGCGAATATATTAGTTTTTGAAAACGGAAATATAAAGATTGCTGATTTTGGGTTGGCGAAGAAGGCAGGGAAAATCAGAGTGGAAACAGGGGAAAGGTTTGAATGGAGAGGAACTCCTCTTTATATGTCTCCAGAATCAATCAATGATAATGAATATGAATCACCGTGTGATATTTGGTCTCTTGGTTGTGCCGTCGTTGAGATGTTCACCGGAAAACCTGCTTGGAATTTGAAGCCGGAAACGAATATTTACGCCTTAATGATCCGAATTGGAGTCGGAGACGATGTTCCGTTACTGCCGGAAAATATGTCGGATGAGGGGAAGGATTTTCTCCGGAAGTGTTTTGTGAAAGATCCGAGTAGAAGATGGACGGCTGAGATGCTTTTGAATCACCCGTTTGTTGCCGGAGATACTGTTCCATTGAAGAAAACAGAACAAGAACAGAGTGTGGTGGTGTCTCCGACAGGTCCTTTTGATTTTCCGGATTTTCTCTCTCTCCCAACAAAACATTCTGGGAATCCTTCGGATGATGATTCGTGTTTTTGTTCCTCGAGGTTTGTTTGTGATTTTGCCATGAGTAGGCTCCGGCAGCTTGTGTCCGAGAGACCGTTGGATTGGTCAGTTTCTGATAGTTGGGTCACAGTCAGGTGA 1053 43.21 MEWIRGDKLGHGSFSTINLAIPKKGMVQFPPLMAVKSSDVISSAFLKNEKRILDEIGTSPHIINCFEDSYTIETNGEKLYNLLLEYAGGGSLSDKIKNHGGRIPEPDIRRHTAEILHGLRHIHCNGFVHCDIKPANILVFENGNIKIADFGLAKKAGKIRVETGERFEWRGTPLYMSPESINDNEYESPCDIWSLGCAVVEMFTGKPAWNLKPETNIYALMIRIGVGDDVPLLPENMSDEGKDFLRKCFVKDPSRRWTAEMLLNHPFVAGDTVPLKKTEQEQSVVVSPTGPFDFPDFLSLPTKHSGNPSDDDSCFCSSRFVCDFAMSRLRQLVSERPLDWSVSDSWVTVR 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3897514 3898566 + evm.model.ptg000010l.1449 HCH2g0055 539280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0055 350 CDD STKc_MAPKKK 2 268 - -
HCH2g0055 350 Gene3D Transferase(Phosphotransferase) domain 1 2 290 - -
HCH2g0055 350 ProSiteProfiles Protein kinase domain profile. 3 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0055 350 SMART serkin_6 3 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0055 350 Pfam Protein kinase domain 6 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0055 350 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524(InterPro)
HCH2g0055 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0055 350 SUPERFAMILY Protein kinase-like (PK-like) 3 289 IPR011009 -
HCH2g0055 350 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 269 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0055 HCH-Chr2:3897514 HCH6g0309 HCH-Chr6:4569118 3.40E-62 dispersed
HCH2g1332 HCH-Chr2:55307724 HCH2g0055 HCH-Chr2:3897514 7.40E-11 transposed
HCH14g0287 HCH-Chr14:31273408 HCH2g0055 HCH-Chr2:3897514 1.60E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81307 PF00069 Pkinase 3.10E-54 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0055 - - - 0.0