Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0057 ATGGATATCGATATGACTACGATGATGCTGGAAATGGATCAAAAGCTTCCAATATCTGATCAATTCTCTAACCCTTTTGATAACAGAACTCTATTGTTTTCAGATTTCTCTCCTAGCCCAAATCCAGGACTTCCTCCGGTGACATCTTCGTTCTTTAATCCGATTCTCGAACCGATGTCGACGACGGCAGCGACAACGACGACAACTCTGCAACTGCAACCCAGTTTGGCTGGAGGGAAGTTGAAGAATAGTAATGGTGAATATCCGGCAGTGAATCCATACGACAAGAGAAGTTCGATGGCGGCGATGAGGGAGATGATATTCCGGATAGCGGCAATGCAGCCGGTATATATAGACCCGGAATCGATAAAGCCACCGAAACGGAGGAATGTGAAGATTTCGAAGGACCCGCAGAGCGTAGCGGCGAGGCATAGGAGGGAGAGGATAAGCGAGAAGATAAGGATATTGCAGAGAATGGTTCCTGGTGGGACTAAAATGGACACAGCTTCCATGCTGGATGAAGCAGTTCATTATATGAAGTTCTTGAAGAAGCAAGTTCAGGCATTAGAACAAGCTGGGGTCAGCAGTAAGATGCCCGTGCCATTATTCGGGTTTTCAGGACCAATGATTAATAATAATAATAATAATAATATAAGTTTGAATTGTGCTAATTTGAATTATTCTTCGGCACTTTTGAAAGCTTGCCAGCAATCTCCAATGGTGGGGTCTTTGCAGATGCATTGA 744 44.22 MDIDMTTMMLEMDQKLPISDQFSNPFDNRTLLFSDFSPSPNPGLPPVTSSFFNPILEPMSTTAATTTTTLQLQPSLAGGKLKNSNGEYPAVNPYDKRSSMAAMREMIFRIAAMQPVYIDPESIKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAVHYMKFLKKQVQALEQAGVSSKMPVPLFGFSGPMINNNNNNNISLNCANLNYSSALLKACQQSPMVGSLQMH 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4027867 4028610 + evm.model.ptg000010l.1447 HCH2g0057 539282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0057 247 Coils Coil 172 192 - -
HCH2g0057 247 SMART finulus 139 188 IPR011598 GO:0046983(InterPro)
HCH2g0057 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 197 IPR036638 GO:0046983(InterPro)
HCH2g0057 247 CDD bHLH_AtIND_like 134 190 - -
HCH2g0057 247 Gene3D - 132 199 IPR036638 GO:0046983(InterPro)
HCH2g0057 247 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 51 228 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0057 247 FunFam BHLH transcription factor 136 199 - -
HCH2g0057 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983(InterPro)
HCH2g0057 247 Pfam Helix-loop-helix DNA-binding domain 142 183 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0057 HCH-Chr2:4027867 HCH4g0634 HCH-Chr4:4156375 3.70E-39 dispersed
HCH2g0057 HCH-Chr2:4027867 HCH12g0625 HCH-Chr12:3745148 3.80E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33123 PF00010 HLH 7.40E-07 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0057 - - - 0.0