Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0057 | ATGGATATCGATATGACTACGATGATGCTGGAAATGGATCAAAAGCTTCCAATATCTGATCAATTCTCTAACCCTTTTGATAACAGAACTCTATTGTTTTCAGATTTCTCTCCTAGCCCAAATCCAGGACTTCCTCCGGTGACATCTTCGTTCTTTAATCCGATTCTCGAACCGATGTCGACGACGGCAGCGACAACGACGACAACTCTGCAACTGCAACCCAGTTTGGCTGGAGGGAAGTTGAAGAATAGTAATGGTGAATATCCGGCAGTGAATCCATACGACAAGAGAAGTTCGATGGCGGCGATGAGGGAGATGATATTCCGGATAGCGGCAATGCAGCCGGTATATATAGACCCGGAATCGATAAAGCCACCGAAACGGAGGAATGTGAAGATTTCGAAGGACCCGCAGAGCGTAGCGGCGAGGCATAGGAGGGAGAGGATAAGCGAGAAGATAAGGATATTGCAGAGAATGGTTCCTGGTGGGACTAAAATGGACACAGCTTCCATGCTGGATGAAGCAGTTCATTATATGAAGTTCTTGAAGAAGCAAGTTCAGGCATTAGAACAAGCTGGGGTCAGCAGTAAGATGCCCGTGCCATTATTCGGGTTTTCAGGACCAATGATTAATAATAATAATAATAATAATATAAGTTTGAATTGTGCTAATTTGAATTATTCTTCGGCACTTTTGAAAGCTTGCCAGCAATCTCCAATGGTGGGGTCTTTGCAGATGCATTGA | 744 | 44.22 | MDIDMTTMMLEMDQKLPISDQFSNPFDNRTLLFSDFSPSPNPGLPPVTSSFFNPILEPMSTTAATTTTTLQLQPSLAGGKLKNSNGEYPAVNPYDKRSSMAAMREMIFRIAAMQPVYIDPESIKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAVHYMKFLKKQVQALEQAGVSSKMPVPLFGFSGPMINNNNNNNISLNCANLNYSSALLKACQQSPMVGSLQMH | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4027867 | 4028610 | + | evm.model.ptg000010l.1447 | HCH2g0057 | 539282 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0057 | 247 | Coils | Coil | 172 | 192 | - | - | |
HCH2g0057 | 247 | SMART | finulus | 139 | 188 | IPR011598 | GO:0046983(InterPro) | |
HCH2g0057 | 247 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 137 | 197 | IPR036638 | GO:0046983(InterPro) | |
HCH2g0057 | 247 | CDD | bHLH_AtIND_like | 134 | 190 | - | - | |
HCH2g0057 | 247 | Gene3D | - | 132 | 199 | IPR036638 | GO:0046983(InterPro) | |
HCH2g0057 | 247 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 51 | 228 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0057 | 247 | FunFam | BHLH transcription factor | 136 | 199 | - | - | |
HCH2g0057 | 247 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 133 | 182 | IPR011598 | GO:0046983(InterPro) | |
HCH2g0057 | 247 | Pfam | Helix-loop-helix DNA-binding domain | 142 | 183 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0057 | HCH-Chr2:4027867 | HCH4g0634 | HCH-Chr4:4156375 | 3.70E-39 | dispersed | |
HCH2g0057 | HCH-Chr2:4027867 | HCH12g0625 | HCH-Chr12:3745148 | 3.80E-44 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33123 | PF00010 | HLH | 7.40E-07 | No_clan | HCH | TF |
Pathway information
