Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0088 ATGTCATCATCAAATTCACCGTGCGCGGCATGTAAATTTCTCCGGCGTAAATGCACACAAGAATGTGTATTTGCACCCTATTTCCCGCCAGATCAGCCACAGAAATTCGCAAACGTTCACAAAGTCTTTGGTGCAAGTAATGTAGCAAAGCTTTTGAATGAGCTCAGTGCTACACAACGTGAAGATGCTGTTAACTCTCTAGCCTATGAAGCGGAGTATCGTCTCCGTGATCCGGTTTACGGTTGCGTAGGTCTCATCTCCGTTCTTCAACATAAGCTCAAGCAAATGCAAAACGATCTCTACAACGCTAAGAAGGAACTCGCTAGCTATATCGGCCCGCAGGCGATGCTTCCGATTCTTCAACCACCTACGGCGATGATGGCGCCACAGCATGCGGCTGCGGCGAATAATCCATCTTCTTCGGGTGTGATGCCGTACAATATGTCGTCCATGTTAGGTATTACTTCAGGTGGTTCTTCACAAATGGTGATTCGGGAGTCGCCCCAGCAACAACATCAACATCATCAAATTCATCAGCATCAGCAGCAACAACAACAATTATTCGAGGCTCAACAGCTAGCTGCGGCAGTGGCGGCTAGAGAGCAGGAGATGTTAAGAGCTTACGAACAAAAACAGCAGCACCACCACCAACAATCCCAAAGGCAACAAGAACTTTTGAGGTTTAACGCGTTCGATTCAGGTTCGGTTTCGGGTAGTGGGTTTAATCAGATGAATCCAGCATCTGGGTTATCACCCTCTTTGGCTCTTGGCACATTTGATAATAGCTATCAAATTCAATCACAACAGCAACAACAACAACAAGAACAATCAAATCCTAACCATCATCAGCTTCCGGTACAGATCTTTCTTCAAACACAACAAACACAAGTTGATCAACAAGTGCAGCAGCAATCACAGCAAACCCAACAACATTCACAAAAACCAGAAACAGATGATGGTAGGAATGTCGGTCCCTCTGGTTAA 984 45.63 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELSATQREDAVNSLAYEAEYRLRDPVYGCVGLISVLQHKLKQMQNDLYNAKKELASYIGPQAMLPILQPPTAMMAPQHAAAANNPSSSGVMPYNMSSMLGITSGGSSQMVIRESPQQQHQHHQIHQHQQQQQQLFEAQQLAAAVAAREQEMLRAYEQKQQHHHQQSQRQQELLRFNAFDSGSVSGSGFNQMNPASGLSPSLALGTFDNSYQIQSQQQQQQQEQSNPNHHQLPVQIFLQTQQTQVDQQVQQQSQQTQQHSQKPETDDGRNVGPSG 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6108360 6109343 - evm.model.ptg000010l.1416 HCH2g0088 539313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0088 327 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
HCH2g0088 327 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
HCH2g0088 327 MobiDBLite consensus disorder prediction 288 313 - -
HCH2g0088 327 Coils Coil 86 106 - -
HCH2g0088 327 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 231 - -
HCH2g0088 327 MobiDBLite consensus disorder prediction 288 327 - -
HCH2g0088 327 MobiDBLite consensus disorder prediction 166 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0180 HCH-Chr10:1483273 HCH2g0088 HCH-Chr2:6108360 1.90E-47 dispersed
HCH13g0848 HCH-Chr13:8747991 HCH2g0088 HCH-Chr2:6108360 9.20E-39 dispersed
HCH14g1105 HCH-Chr14:37979157 HCH2g0088 HCH-Chr2:6108360 2.10E-40 dispersed
HCH2g0088 HCH-Chr2:6108360 HCH8g1410 HCH-Chr8:48776485 1.50E-40 dispersed
HCH2g0088 HCH-Chr2:6108360 HCH9g0123 HCH-Chr9:676969 6.90E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33125 PF03195 LOB 1.70E-41 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0088 - - - 0.0