Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0088 | ATGTCATCATCAAATTCACCGTGCGCGGCATGTAAATTTCTCCGGCGTAAATGCACACAAGAATGTGTATTTGCACCCTATTTCCCGCCAGATCAGCCACAGAAATTCGCAAACGTTCACAAAGTCTTTGGTGCAAGTAATGTAGCAAAGCTTTTGAATGAGCTCAGTGCTACACAACGTGAAGATGCTGTTAACTCTCTAGCCTATGAAGCGGAGTATCGTCTCCGTGATCCGGTTTACGGTTGCGTAGGTCTCATCTCCGTTCTTCAACATAAGCTCAAGCAAATGCAAAACGATCTCTACAACGCTAAGAAGGAACTCGCTAGCTATATCGGCCCGCAGGCGATGCTTCCGATTCTTCAACCACCTACGGCGATGATGGCGCCACAGCATGCGGCTGCGGCGAATAATCCATCTTCTTCGGGTGTGATGCCGTACAATATGTCGTCCATGTTAGGTATTACTTCAGGTGGTTCTTCACAAATGGTGATTCGGGAGTCGCCCCAGCAACAACATCAACATCATCAAATTCATCAGCATCAGCAGCAACAACAACAATTATTCGAGGCTCAACAGCTAGCTGCGGCAGTGGCGGCTAGAGAGCAGGAGATGTTAAGAGCTTACGAACAAAAACAGCAGCACCACCACCAACAATCCCAAAGGCAACAAGAACTTTTGAGGTTTAACGCGTTCGATTCAGGTTCGGTTTCGGGTAGTGGGTTTAATCAGATGAATCCAGCATCTGGGTTATCACCCTCTTTGGCTCTTGGCACATTTGATAATAGCTATCAAATTCAATCACAACAGCAACAACAACAACAAGAACAATCAAATCCTAACCATCATCAGCTTCCGGTACAGATCTTTCTTCAAACACAACAAACACAAGTTGATCAACAAGTGCAGCAGCAATCACAGCAAACCCAACAACATTCACAAAAACCAGAAACAGATGATGGTAGGAATGTCGGTCCCTCTGGTTAA | 984 | 45.63 | MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELSATQREDAVNSLAYEAEYRLRDPVYGCVGLISVLQHKLKQMQNDLYNAKKELASYIGPQAMLPILQPPTAMMAPQHAAAANNPSSSGVMPYNMSSMLGITSGGSSQMVIRESPQQQHQHHQIHQHQQQQQQLFEAQQLAAAVAAREQEMLRAYEQKQQHHHQQSQRQQELLRFNAFDSGSVSGSGFNQMNPASGLSPSLALGTFDNSYQIQSQQQQQQQEQSNPNHHQLPVQIFLQTQQTQVDQQVQQQSQQTQQHSQKPETDDGRNVGPSG | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6108360 | 6109343 | - | evm.model.ptg000010l.1416 | HCH2g0088 | 539313 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0088 | 327 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
HCH2g0088 | 327 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
HCH2g0088 | 327 | MobiDBLite | consensus disorder prediction | 288 | 313 | - | - | |
HCH2g0088 | 327 | Coils | Coil | 86 | 106 | - | - | |
HCH2g0088 | 327 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 231 | - | - | |
HCH2g0088 | 327 | MobiDBLite | consensus disorder prediction | 288 | 327 | - | - | |
HCH2g0088 | 327 | MobiDBLite | consensus disorder prediction | 166 | 185 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0180 | HCH-Chr10:1483273 | HCH2g0088 | HCH-Chr2:6108360 | 1.90E-47 | dispersed | |
HCH13g0848 | HCH-Chr13:8747991 | HCH2g0088 | HCH-Chr2:6108360 | 9.20E-39 | dispersed | |
HCH14g1105 | HCH-Chr14:37979157 | HCH2g0088 | HCH-Chr2:6108360 | 2.10E-40 | dispersed | |
HCH2g0088 | HCH-Chr2:6108360 | HCH8g1410 | HCH-Chr8:48776485 | 1.50E-40 | dispersed | |
HCH2g0088 | HCH-Chr2:6108360 | HCH9g0123 | HCH-Chr9:676969 | 6.90E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33125 | PF03195 | LOB | 1.70E-41 | No_clan | HCH | TF |
Pathway information
