Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0120 ATGTCACAAGATTACCACCACCAAGCGGCGGCGGCGGCGGCTGCTGCTGGCTTTTTCACACCTTTCTCTAATGGATTCGATAGATCGCCGCCTTCCTCCGCCGTGAACCACCACCAAGACCCTACACAGTATCACATAGCTCAGCAGATCCGGAAGGAAAAGTTGAGACTACAAGGGTTCGAAGCACAACCTCCGCCGTCGTTGGTTGGGATTGATGAGGAAGAAGAAGATCAGTCTAGTGGGCTTCATCATGTCTACGACTCGGCCGGGATGTTGTCGGAAATACTCAATTTTACTCCAACAACAACCGGAGAATTACTTGAACATTCAGCCACAACAAGCTTTCGAGTGTCGCGACCGCCTCAGCCACCGAGCATGGCCGATGTCTGGTACGGAAACAGACAAATGAATCATCATGATAACCGTGAGAATTTTACTCATCACCACCATCAGATTAATCAAGCTGCAGCAATAAATGCAGACTCAGCGGTTGCCATGCAGCTTTTTCTGATGAATCCGAATCCTCGGTCGCCATCTCCTCCTCCTCCGCCACCACCACCGACAGCGGCTGCTAATTCCTCCACCCTCCACATGTTACTTCCAAACCCATCTTCATCTCTCGAAGGAGGGTCTTTCGGACAATTCACATGGGTTCCCAACAATGGACAAGGAGGAGACCATAATTCCATTTCCAACAACCAGCCTAATGAAGCTCTTTCGTTGTCATTATCATCTTCTTTGCAACACCTGGAAGCAGCAAAAGCTGAGGAATTAAGAATGGGTGACAGCCAGTTACTTTATCAAAACCCAAATCACCATGTTCATGTTGGGATTGGTTCTTCATTGGGAGTTGTTAATTCACTTAGGAATTCAAAGTATGTGAAAGCTGCTCAAGAATTGTTGGAGGAGTTTTGCAGTGTGGGAAGAGGTCAGTTTAAGAAGAATAAATTGAATAGAAACTTGTCCAACCCTAACTCCAACCCTGGGACGGGAAGCGGCAGCGGTGGCGGTGGCGGCAGTAGCGGCGGAGTTTCTTCATCTACGTCTAAGGATCAGCCACCTTTGTCAGCTGCTGATAGGATTGAACATCAGAGAAGGAAGGTCAAATTGTTAACCATGCTTGATGAGGTGGATAGAAGATATAACCATTACTGTGAGCAAATGCAAATGGTAGTAAATTCATTTGACATAGTGATGGGGTTTGGGGCAGCAGTGCCCTACACAGCATTGGCACAGAAAGCAATGTCAAGGCATTTTAGGTGTTTGAAAGATGCAATAACAGCACAGTTAAAGCATAGCTGTGAAATGTTGGGAGAGAAAGATGGAGGAAGAGGAACAGGAATAACAAAGGGAGAAACACCAAGATTGAAGATGTTGGAGCAAAGCCTAAGGCAACAAAGAGCATTTCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGGCCTCAACGTGGCTTGCCTGAAAGATCTGTCAACATCTTGAGAGCTTGGCTTTTCGAGCATTTCCTTCATCCGTACCCTAGTGACGCTGATAAGCATTTGCTGGCTCGACAGACTGGTTTATCAAGAAATCAGGTATCAAATTGGTTCATTAATGCAAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTATCAACAAGAAGCCAAAGAAGAGGACTCAGAAGAGAGAGAATGGAACCAAAACAGTAGCCTTTCACAAACTCCAACACCGACATCAATAGCTGCCACGCCTACATCAACAACCACGCCACCGCCACCGCCACCGACAACGACGGCCACCACCACCAACACCACCACCGTAACCACAACCTCATTAACAGCACCAACACCAAAAAGATCCAATATCAATGCCAATGAAAACGACCCTTCAATTATCACAATCAATAGGCCAGACTTCTCGGAAAACCAAGCAAAGCAAAGGCATCATCATCATCATCAATATTCCATTATGACCTCTTCCTCCGCCGTAGCAGCCACTGCCACCGCCACCAATCAGGTGGCGCCACCACCGATGTTACAGTATGACTCAGACATGCATGACACTTGTCGCCATGTCAGCGTCGTGGCAGCCGACCATCAATTTGGGACCACTTCTGGTAATAACGCTGTCGCTGACAATATTGGAGGGTCCACAGTCATTAGGTTTGGGACCACTGCTGGTGACGTGTCACTCACCTTAGGGTTACGCCATGCCGGAAATATGCCGGAGAAGAATTCTTCTTTCTCACTCAGTGAATTTGGAGGCTGTTAA 2256 47.3 MSQDYHHQAAAAAAAAGFFTPFSNGFDRSPPSSAVNHHQDPTQYHIAQQIRKEKLRLQGFEAQPPPSLVGIDEEEEDQSSGLHHVYDSAGMLSEILNFTPTTTGELLEHSATTSFRVSRPPQPPSMADVWYGNRQMNHHDNRENFTHHHHQINQAAAINADSAVAMQLFLMNPNPRSPSPPPPPPPPTAAANSSTLHMLLPNPSSSLEGGSFGQFTWVPNNGQGGDHNSISNNQPNEALSLSLSSSLQHLEAAKAEELRMGDSQLLYQNPNHHVHVGIGSSLGVVNSLRNSKYVKAAQELLEEFCSVGRGQFKKNKLNRNLSNPNSNPGTGSGSGGGGGSSGGVSSSTSKDQPPLSAADRIEHQRRKVKLLTMLDEVDRRYNHYCEQMQMVVNSFDIVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCEMLGEKDGGRGTGITKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKEEDSEEREWNQNSSLSQTPTPTSIAATPTSTTTPPPPPPTTTATTTNTTTVTTTSLTAPTPKRSNINANENDPSIITINRPDFSENQAKQRHHHHHQYSIMTSSSAVAATATATNQVAPPPMLQYDSDMHDTCRHVSVVAADHQFGTTSGNNAVADNIGGSTVIRFGTTAGDVSLTLGLRHAGNMPEKNSSFSLSEFGGC 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7860613 7866153 - evm.model.ptg000010l.1384 HCH2g0120 539345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0120 751 Pfam Associated with HOX 288 427 IPR006563 -
HCH2g0120 751 FunFam BEL1-like homeodomain protein 4 483 545 - -
HCH2g0120 751 CDD homeodomain 480 541 IPR001356 GO:0003677(InterPro)
HCH2g0120 751 SMART HOX_1 480 544 IPR001356 GO:0003677(InterPro)
HCH2g0120 751 SMART prehox3 282 428 IPR006563 -
HCH2g0120 751 MobiDBLite consensus disorder prediction 171 234 - -
HCH2g0120 751 Gene3D - 483 545 - -
HCH2g0120 751 MobiDBLite consensus disorder prediction 191 234 - -
HCH2g0120 751 SUPERFAMILY Homeodomain-like 482 547 IPR009057 -
HCH2g0120 751 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 227 567 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH2g0120 751 MobiDBLite consensus disorder prediction 594 626 - -
HCH2g0120 751 MobiDBLite consensus disorder prediction 561 580 - -
HCH2g0120 751 MobiDBLite consensus disorder prediction 174 190 - -
HCH2g0120 751 ProSiteProfiles 'Homeobox' domain profile. 477 540 IPR001356 GO:0003677(InterPro)
HCH2g0120 751 MobiDBLite consensus disorder prediction 316 362 - -
HCH2g0120 751 MobiDBLite consensus disorder prediction 548 626 - -
HCH2g0120 751 MobiDBLite consensus disorder prediction 316 354 - -
HCH2g0120 751 Pfam Homeobox KN domain 497 536 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0218 HCH-Chr14:29123419 HCH2g0120 HCH-Chr2:7860613 9.80E-136 dispersed
HCH2g0120 HCH-Chr2:7860613 HCH5g0533 HCH-Chr5:3672278 1.90E-78 dispersed
HCH2g0120 HCH-Chr2:7860613 HCH2g0479 HCH-Chr2:48310821 1.30E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33130 PF07526 POX 4.60E-52 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0120 - - - 0.0