Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0130 ATGGCTTCATCAAACTCCATCTTTCTCCTCACAACTTCTTCATTAATCATCATTCTCTCTTTCTTCTTCTCTCTTTCTTCCGCAGAACCCGATTTCAACACCCCTCTTCTGCCGGACACCCTCTGCAAATCTACCCCCAATCCCGGCTTCTGCAAATCCTTTCTCCAAAAATCACCTGCCACCGTCTTCTCCCACTGCCGCTTTACCCTCAAACATGCCCTAACTCACGCCAATGACTTCCTCGGATTAGTCGAAAATAATCTCAAACTTAGCTCCATCTTACCTCTCCCTGCATTCCTTGCTCTTAAAGATTGTCATTCTCTTGCTTCAAGAAACGTTGAATTTTTATCAAACACTTTCAATACCGTCAATAAAACTAGTCAAACCCTTCCTTACTATCAAGCTGATGATATGCAGACCTTGATGAGTGCTATAATTACTAACAGAGATACTTGTAACGATGGCCTCTCCGTTGCCTCTGGTTCGATCTTGGGTTTGCTTGATAATGTGTTGAATTCGTTGTCATATGGTAAAAATCTCTACAGTTTGTATCTTTCTTTATTTACTTTGGGTTGGGTTCCAAAAGATGGGAAAGGTCTTGGCCGGGTGCCGAAGGGCAAACATTTTCCATTCCACCACGGACCGTTGCTGATGAAGATGTCGTCAAAGAACCGTGCTTATTACGACGGGCTGGTGCATAGAAAAAAGCCGCGCAGAAGCCTTCTTCAGACTAATGAAGAAGAAGATGGAATTTTAGTCAATGGTATTGTTGCGGTGGATAAAAATGGTGGCTACGACTACACCAACATCAACCAAGCCATTTTAGCAGCTCCCAATAACACCGGTCCAAGCAACGGATACTTTTTGATCTTCATCACCGCAGGTATTTACAATGAGACAATTTTGATTCCCAAATACAAAAAGTATGTGTTGATGATCGGAGAAGGTAACAATCAAACCGTTATCACTGGAAACAATAATGTTGTCGATGGCTCTACCACTTTCAACAGCGCTACTGTTGCTGTGGAGGGAACAGGATTCTTTGGAGTGAACCTAACAATCACCAACACAGCCGGAGCCATCAAACACCAGGCAGTGGCCTTGCGAGTTAGCGCTGACCTAACAACATTCTACAGCTGCATATTTGAAGGGTACCAAGATACCCTCTACACCCATTCCCTCAGGCAATTCTATAGAGAATGTGACGTCTATGGAACTGTCGATTTCATCTTTGGTAACGCTGCCGTCGTCCTTCAAAATTGCAACCTCTATGCTCGACTTCCGATGAGTGGACAATTCAACGCTCTCACGGCACAGGGCCGAGATGATCCAAATCAGAACACGGGCACTTCAATCCACAACTGCACTATCAAACCAACCCCCGAGCTTGCTGCCAGCCCCAACACCAAGAGCTATCTTGGAAGACCATGGAAGACATATTCTCGGACAGTTTATATGCAATCATATATTGATAGTTTTATAAACCCAGTTGGTTGGCAAATATGGGATGGGACTTTGAACCTTAATACATCATATTATGCTGAGTATGATAATAGAGGAACTGGATCCAACACTTCTCAAAGGGCTAAATGGGCTGTTGGTGTTATTAACAGGACTGATGCCATGAACTTTACTGTGTCAAGTTTCTTGGTGGGAGATCAATGGCTGCCAAACACTACTGTGCCTTACACTGGCTCCTTAATTGAGCAATCTGTTTAA 1719 43.69 MASSNSIFLLTTSSLIIILSFFFSLSSAEPDFNTPLLPDTLCKSTPNPGFCKSFLQKSPATVFSHCRFTLKHALTHANDFLGLVENNLKLSSILPLPAFLALKDCHSLASRNVEFLSNTFNTVNKTSQTLPYYQADDMQTLMSAIITNRDTCNDGLSVASGSILGLLDNVLNSLSYGKNLYSLYLSLFTLGWVPKDGKGLGRVPKGKHFPFHHGPLLMKMSSKNRAYYDGLVHRKKPRRSLLQTNEEEDGILVNGIVAVDKNGGYDYTNINQAILAAPNNTGPSNGYFLIFITAGIYNETILIPKYKKYVLMIGEGNNQTVITGNNNVVDGSTTFNSATVAVEGTGFFGVNLTITNTAGAIKHQAVALRVSADLTTFYSCIFEGYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYARLPMSGQFNALTAQGRDDPNQNTGTSIHNCTIKPTPELAASPNTKSYLGRPWKTYSRTVYMQSYIDSFINPVGWQIWDGTLNLNTSYYAEYDNRGTGSNTSQRAKWAVGVINRTDAMNFTVSSFLVGDQWLPNTTVPYTGSLIEQSV 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8982461 8985782 + evm.model.ptg000010l.1374 HCH2g0130 539355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0130 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 189 IPR035513 -
HCH2g0130 572 Gene3D - 253 567 IPR012334 -
HCH2g0130 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 190 IPR035513 -
HCH2g0130 572 FunFam Pectinesterase 252 567 - -
HCH2g0130 572 SUPERFAMILY Pectin lyase-like 253 564 IPR011050 -
HCH2g0130 572 CDD PMEI-like_3 40 189 - -
HCH2g0130 572 Pfam Plant invertase/pectin methylesterase inhibitor 39 182 IPR006501 GO:0004857(InterPro)
HCH2g0130 572 PANTHER PECTINESTERASE 14 558 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH2g0130 572 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
HCH2g0130 572 Pfam Pectinesterase 257 553 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH2g0130 572 NCBIfam pectinesterase inhibitor domain 14 161 IPR006501 GO:0004857(InterPro)
HCH2g0130 572 SMART PMEI_2 33 187 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0130 HCH-Chr2:8982461 HCH4g1043 HCH-Chr4:6725578 1.50E-163 dispersed
HCH2g0130 HCH-Chr2:8982461 HCH4g1042 HCH-Chr4:6698670 1.00E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0130 K01051 - csv:101216984 753.436