Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0155 | ATGGCTTCTAAATCCAGCACCATGGTCAACCAAGCTTTGTTTGAAGATCAAGATCATTCTCAAATGGGTTTCTTTAGTTTCCCTCAAAATTTATCATTTCAGATTCCTTCAATAGGATATAACCCATCTCTCAGAGCCATTAGTAGTAGTTTATTAACAGCTTCTTCTAATTCTCACACTCAGCCTTTTGAAGCCCCTAATTTTAATCTCTCTGAAACCCTCCTTTCATCTGTTTTACCTCTCAAGCTTAGAGATGAAAACCCTTCTTCTTCTCCCTCTGAGTTGGGATTGGGAGGATCAGGACAAGAGCTTCTTTCCTTGCAAAGATCAACTACTGCAAATCTCTGGCCATGGGGAGAGATTGGAGAGAGCTTGAGCACAGTAAAAAGAAATGGAAATGATTATCACTTGGGGGTTTCTGCAATGAAAATGAAGAAGATGAAAGGAAGGAGAAAGGTGAGAGAGCCAAGATTTTCCTTCAAGACAATGAGTGATGTGGATGTTCTTGATGATGGATACAAATGGAGAAAGTACGGACAGAAAGTGGTGAAAAACACACAGCATCCCAGAAGCTATTATCGTTGTACACAAGATCACTGCCGGGTAAAGAAACGCGTGGAGAGATTAGCTGAAGATCCAAGAATGGTGATTACAACTTATGAAGGAAGGCACATCCACTCTCCTTCCCATGATTCTGAAGACTCAGAAGCTCAAACACATCTTAATAATTTCTTCTGGTAA | 741 | 40.35 | MASKSSTMVNQALFEDQDHSQMGFFSFPQNLSFQIPSIGYNPSLRAISSSLLTASSNSHTQPFEAPNFNLSETLLSSVLPLKLRDENPSSSPSELGLGGSGQELLSLQRSTTANLWPWGEIGESLSTVKRNGNDYHLGVSAMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHIHSPSHDSEDSEAQTHLNNFFW | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 11193089 | 11195180 | + | evm.model.ptg000010l.1349 | HCH2g0155 | 539380 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0155 | 246 | ProSiteProfiles | WRKY domain profile. | 164 | 229 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH2g0155 | 246 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 129 | 232 | IPR044810 | GO:0003700(InterPro) | |
HCH2g0155 | 246 | SMART | WRKY_cls | 169 | 228 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH2g0155 | 246 | SUPERFAMILY | WRKY DNA-binding domain | 161 | 228 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH2g0155 | 246 | FunFam | WRKY transcription factor 57 | 155 | 229 | - | - | |
HCH2g0155 | 246 | Pfam | WRKY DNA -binding domain | 170 | 226 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH2g0155 | 246 | Gene3D | WRKY domain | 156 | 222 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0155 | HCH-Chr2:11193089 | HCH7g1795 | HCH-Chr7:49521096 | 4.50E-37 | dispersed | |
HCH2g0149 | HCH-Chr2:10414838 | HCH2g0155 | HCH-Chr2:11193089 | 3.90E-20 | proximal | |
HCH14g0184 | HCH-Chr14:27738487 | HCH2g0155 | HCH-Chr2:11193089 | 7.70E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33133 | PF03106 | WRKY | 3.70E-24 | CL0274 | HCH | TF |
Pathway information
