Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0155 ATGGCTTCTAAATCCAGCACCATGGTCAACCAAGCTTTGTTTGAAGATCAAGATCATTCTCAAATGGGTTTCTTTAGTTTCCCTCAAAATTTATCATTTCAGATTCCTTCAATAGGATATAACCCATCTCTCAGAGCCATTAGTAGTAGTTTATTAACAGCTTCTTCTAATTCTCACACTCAGCCTTTTGAAGCCCCTAATTTTAATCTCTCTGAAACCCTCCTTTCATCTGTTTTACCTCTCAAGCTTAGAGATGAAAACCCTTCTTCTTCTCCCTCTGAGTTGGGATTGGGAGGATCAGGACAAGAGCTTCTTTCCTTGCAAAGATCAACTACTGCAAATCTCTGGCCATGGGGAGAGATTGGAGAGAGCTTGAGCACAGTAAAAAGAAATGGAAATGATTATCACTTGGGGGTTTCTGCAATGAAAATGAAGAAGATGAAAGGAAGGAGAAAGGTGAGAGAGCCAAGATTTTCCTTCAAGACAATGAGTGATGTGGATGTTCTTGATGATGGATACAAATGGAGAAAGTACGGACAGAAAGTGGTGAAAAACACACAGCATCCCAGAAGCTATTATCGTTGTACACAAGATCACTGCCGGGTAAAGAAACGCGTGGAGAGATTAGCTGAAGATCCAAGAATGGTGATTACAACTTATGAAGGAAGGCACATCCACTCTCCTTCCCATGATTCTGAAGACTCAGAAGCTCAAACACATCTTAATAATTTCTTCTGGTAA 741 40.35 MASKSSTMVNQALFEDQDHSQMGFFSFPQNLSFQIPSIGYNPSLRAISSSLLTASSNSHTQPFEAPNFNLSETLLSSVLPLKLRDENPSSSPSELGLGGSGQELLSLQRSTTANLWPWGEIGESLSTVKRNGNDYHLGVSAMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHIHSPSHDSEDSEAQTHLNNFFW 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11193089 11195180 + evm.model.ptg000010l.1349 HCH2g0155 539380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0155 246 ProSiteProfiles WRKY domain profile. 164 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH2g0155 246 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 129 232 IPR044810 GO:0003700(InterPro)
HCH2g0155 246 SMART WRKY_cls 169 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH2g0155 246 SUPERFAMILY WRKY DNA-binding domain 161 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH2g0155 246 FunFam WRKY transcription factor 57 155 229 - -
HCH2g0155 246 Pfam WRKY DNA -binding domain 170 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH2g0155 246 Gene3D WRKY domain 156 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0155 HCH-Chr2:11193089 HCH7g1795 HCH-Chr7:49521096 4.50E-37 dispersed
HCH2g0149 HCH-Chr2:10414838 HCH2g0155 HCH-Chr2:11193089 3.90E-20 proximal
HCH14g0184 HCH-Chr14:27738487 HCH2g0155 HCH-Chr2:11193089 7.70E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33133 PF03106 WRKY 3.70E-24 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0155 - - - 0.0