Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0167 ATGGCAAAATCACCAGAAAAAGAACACCGACAAAAAGCTTTTGGTTGGGCTGCTAGAGATTCTTCTGGGTTACTCTCACCCTTCCATTTCTCTAGAAGGGAAAACGGTGATGAAGATGTTACAATCAAAGTCCTTTACTGTGGTGTTTGCCATTCTGATCTGCATTTGCTCAAGAATGATTGGGGTGTCACGAATTATCCCATAGTCCCAGGGCATGAGATTGCTGGTGTTGTGACTTCAGTTGGGAATAATGTAAAGAGGTTTAAAGTGGGTGATCAAGTTGGGGTTGGTGTCTTAGTTGGATCTTGCAAAAGTTGTGAAAATTGTGAACAGGACTTGGAGAATTACTGTCCCAAAATGATATTTACTTATAACTCACATTCATTTGATGGAACCAAGAATTATGGTGGTTATTCTGATATTATAGTTGTTGATCAGCATTTTGTGCTGAGATTTCCTGACAATTTACCCCTTGATGCTGGGGCTCCACTTTTATGTGCTGGAATCACAGTTTACAGTCCTATGAAATATTATGGAATGACTCAGCCTGGTAAGCATTTGGGTGTGGCTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAATTTGGTAAGGCATTTGGGTTGAAAGTTACAGTCATCAGTACCTCTCCAAGCAAAAAGGAGGAAGCAATTGACAGACTTGGTGCTGATGCTTTCCTTGTTTCAAGTGATCCAGCTCAGTTGAAGGCTGCCATGGCCACTATGGATTACATTATTGATACAGTGTCTGCTAATCACGCCCTTGCGCCATTTCTTGGTCTGCTAAAGCTCAATGGGAAGTTGGTCACTGTGGGTTTACCTAACAAGCCGCTAGAGCTGCCTATCATGCCTCTTGTTTTTGGAAGGAAGATGATTGGTGGAAGTAACTTTGGAGGACTGAAAGAGACACAAGAGATGCTGGATTTTTGTGGAGAGCACAATGTTACTGCAGATATTGAGCTCATTGCAATGGATGAAATTAACACAGCCATGGAAAGGTTGGCGAAATCTGATGTTAAATACCGGTTCGTGATCGATGTTGGAAACTCCTCGAAACACAAGGTAGCTAAGGCTACAATATAA 1101 42.05 MAKSPEKEHRQKAFGWAARDSSGLLSPFHFSRRENGDEDVTIKVLYCGVCHSDLHLLKNDWGVTNYPIVPGHEIAGVVTSVGNNVKRFKVGDQVGVGVLVGSCKSCENCEQDLENYCPKMIFTYNSHSFDGTKNYGGYSDIIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTQPGKHLGVAGLGGLGHVAVKFGKAFGLKVTVISTSPSKKEEAIDRLGADAFLVSSDPAQLKAAMATMDYIIDTVSANHALAPFLGLLKLNGKLVTVGLPNKPLELPIMPLVFGRKMIGGSNFGGLKETQEMLDFCGEHNVTADIELIAMDEINTAMERLAKSDVKYRFVIDVGNSSKHKVAKATI 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12912715 12924398 - evm.model.ptg000010l.1337 HCH2g0167 539392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0167 366 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
HCH2g0167 366 Gene3D - 16 353 - -
HCH2g0167 366 FunFam probable cinnamyl alcohol dehydrogenase 16 175 - -
HCH2g0167 366 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491(InterPro)
HCH2g0167 366 Pfam Alcohol dehydrogenase GroES-like domain 36 154 IPR013154 -
HCH2g0167 366 PANTHER ALDEHYDE REDUCTASE 5 356 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
HCH2g0167 366 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
HCH2g0167 366 Pfam Zinc-binding dehydrogenase 194 316 IPR013149 -
HCH2g0167 366 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
HCH2g0167 366 SUPERFAMILY GroES-like 20 185 IPR011032 -
HCH2g0167 366 CDD CAD1 14 352 IPR047109 GO:0016616(InterPro)
HCH2g0167 366 Gene3D - 167 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0103 HCH-Chr12:541546 HCH2g0167 HCH-Chr2:12912715 3.20E-124 dispersed
HCH14g0432 HCH-Chr14:33356119 HCH2g0167 HCH-Chr2:12912715 3.50E-139 dispersed
HCH14g0433 HCH-Chr14:33363201 HCH2g0167 HCH-Chr2:12912715 3.10E-143 dispersed
HCH2g0167 HCH-Chr2:12912715 HCH7g0690 HCH-Chr7:7911404 4.40E-105 dispersed
HCH2g0167 HCH-Chr2:12912715 HCH4g1853 HCH-Chr4:48358294 5.20E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0167 K00083 - vvi:100245522 588.571