Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0169 ATGGAAGGTTTTTTCAAGGACTGTATATGTGCCATAAAGAAGAATAGAGCTTTCTTAGCTGTGATTCTCATTCAAACAATATATGCAGCCATGTTCTTGCTCTCTAAAGCTGCCTTTGATGGTGGAATGAACAATTTTGTGTTTGTTTTCTATAGGCAAGCCATAGCCACAATCTTCTTAGCCCCTATAGCTTTCTACTTTGAATGGAAAAATGCTCCACCCTTGTCTTTTCTAACCTTCTGCAAGATTTTCGTGCTTTCTTTATTTGGGATAGCGATATGTCTGAATCTTTATGGGGTTGCTCTTGTCTATACTTCAGCAACTTTAGCTGCTGCAACTACAAATTGCCTTCCAGTCATTACCTTCTTTTTCGCCCTTCTACTCAGGATGGAGGTGCTGAGGTTAAAATCAATAGCAGGAGTAGGAAAGCTTGCAGGAATATTATTGTGCGTGGGTGGCGTAGCGATATTGGCGTTCTATAAGGGCCCTCAATTCACATTCCTCAGCAACCATCACCTCTTTTATATCCATAATAATCATCACCACCACCATTCCGTACCAGCTAACAACTGGTTAAAGGGTTGCTTTCTTATGCTTGCTTCCAATACCTTATGGGGTCTCTTTCTTGTTCTTCAGGCATTCGTAATGAAAAGCTACCCTTCGAAGCTTCTCTTAACAACTCTTCAATGTCTCTTGAGCTCATTTCAATCGTTCGCTATTGCTATTGCATTCGAGAGAAACCCTAACGAATGGAAGTTGGGATGGAATGTTAGGCTTCTTGCAGTTGCATACTGTGGTGTGGTGGTGACTGCTGTTACATATTCTCTTCAAGCCTGGGTTATTGAGAAGAAAGGGCCAGTTTTTCTGGCCATGTCCACACCATTTGCTCTTATCATTACAATCTTTTCTTCTGCAATCCTACTTGGTGATAGCATCAGTTTGGGAAGTTCTTTGGGAGGGCTGTTATTGGTTGGAGGGCTCTATTTTGTGCTATGGGGAAAGAGCAAAGAGCAAAAGTTAAGTGAAGGGTTAAAAGAATTGGACAAGGAATGCATCAGCTTGCCAGTGAAAGAAACTACAAAATTAGGAAATGGCAATACTCCACCACCTTCAGTGGCCAATGTTTGA 1128 41.4 MEGFFKDCICAIKKNRAFLAVILIQTIYAAMFLLSKAAFDGGMNNFVFVFYRQAIATIFLAPIAFYFEWKNAPPLSFLTFCKIFVLSLFGIAICLNLYGVALVYTSATLAAATTNCLPVITFFFALLLRMEVLRLKSIAGVGKLAGILLCVGGVAILAFYKGPQFTFLSNHHLFYIHNNHHHHHSVPANNWLKGCFLMLASNTLWGLFLVLQAFVMKSYPSKLLLTTLQCLLSSFQSFAIAIAFERNPNEWKLGWNVRLLAVAYCGVVVTAVTYSLQAWVIEKKGPVFLAMSTPFALIITIFSSAILLGDSISLGSSLGGLLLVGGLYFVLWGKSKEQKLSEGLKELDKECISLPVKETTKLGNGNTPPPSVANV 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13568959 13576312 + evm.model.ptg000010l.1335 HCH2g0169 539394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0169 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 336 - -
HCH2g0169 375 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020(InterPro)
HCH2g0169 375 Pfam EamA-like transporter family 17 142 IPR000620 GO:0016020(InterPro)
HCH2g0169 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
HCH2g0169 375 PANTHER WAT1-RELATED PROTEIN 19 345 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0160 HCH-Chr14:26078164 HCH2g0169 HCH-Chr2:13568959 1.00E-79 dispersed
HCH14g0161 HCH-Chr14:26212800 HCH2g0169 HCH-Chr2:13568959 1.10E-84 dispersed
HCH2g0169 HCH-Chr2:13568959 HCH9g0974 HCH-Chr9:7272502 6.20E-62 dispersed
HCH13g0233 HCH-Chr13:1531530 HCH2g0169 HCH-Chr2:13568959 6.50E-88 transposed
HCH14g0154 HCH-Chr14:25670947 HCH2g0169 HCH-Chr2:13568959 1.10E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0169 - - - 0.0