Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0197 ATGGTAAAAGACAATCTCTACATCACAATTCCGAATCATTTCCGTTGCCCAATTTCTCTAGACGTAATGAAATCTCCCGTAAGTTTAACCACCGGTGTTACTTACGATCGTTCCAGCATCCAACGGTGGCTAGAAAGCGGAAACAACACGTGTCCGGCGACGATGCAGGTTCTTCAAAGTACGGAATTTGTTCCTAATTGTAACTTAAAACGGCTCATTCAGATTTGGTCTGACTCGACCCATATCCGGTTCGACTCCACCGTAACGACGTCGGCTCAGTCTCTAATCTCCGAGGAAGAAATCTTAACCGTTGTTGAAGATATGAAGAGGAATAAGAACGATCGTAATTTCTCTCTTTCGAAGATTGTTTGTTTCGTTAAATTATCGGAACAGAACGTGAAGTTTCTCGTTAAACTAGACGGCGTTGTTACGATGCTTGTTGATGTTCTTAATTCGTTCGATGGAGATATTGATTCTTTGGAACGAGTAGTTAGGGTTTTGGATTTAGTTCGGAACGAAATTCAAGATCGAGAAGATTTGATGAATTCGATATTGAAAAGCAATCGCGATTGTTTGAATTCAATGATTTTCGTTCTGAAACAAGGCAATACAGAATCGCAAAGTGGAACAGCTAGGGTTATAGAGTGTATCGCTATGAATGCTGAATCAAAGATTCTAATCGCTGAAAAAGATGGAATTCTACTGGAATTAATAAGATTAATCGGTACGGACAAGGATAGAAGCTTAATCGAATCAGTATTATCATGTTTAATCTCAATATCAATGCCGAAACGTGTAAAAATGAAACTGGTTGATCTTGGATCAATAAAAGCCCTAACGAAATTGCTATTACAATCGAATTCAAGCGTAGCGATTACTGAGAAAGTATTGAAATTATTAGCAACGTTATCGTCAGTTGAAGAAGGAAGATCGCAGATCAGTGAGAATGAAGAATGCGTAGCGATGATTGTGAAGAAAGTGATGAAAGTATCGAATACAGCGACGGAGCATGCAGTGACGATTTTATGGTGTATTTGTTATTTGTTTAGAGAAGAGAGAGCGCAAGAGGCGGTGGAGAAAGCAAATGGGCTTGCTAAGATATTGTTGTTGATGCAGAGTAATTGTCCAGCTGCTGTTAGACAAATGGCTAAAGATTTGCTTAAGATTTTTAAGGTTCATTCTAGGTCTTGCTTATCTTATTATGATACTAATACTTCTCACATTATGCCCTTTTGA 1236 38.51 MVKDNLYITIPNHFRCPISLDVMKSPVSLTTGVTYDRSSIQRWLESGNNTCPATMQVLQSTEFVPNCNLKRLIQIWSDSTHIRFDSTVTTSAQSLISEEEILTVVEDMKRNKNDRNFSLSKIVCFVKLSEQNVKFLVKLDGVVTMLVDVLNSFDGDIDSLERVVRVLDLVRNEIQDREDLMNSILKSNRDCLNSMIFVLKQGNTESQSGTARVIECIAMNAESKILIAEKDGILLELIRLIGTDKDRSLIESVLSCLISISMPKRVKMKLVDLGSIKALTKLLLQSNSSVAITEKVLKLLATLSSVEEGRSQISENEECVAMIVKKVMKVSNTATEHAVTILWCICYLFREERAQEAVEKANGLAKILLLMQSNCPAAVRQMAKDLLKIFKVHSRSCLSYYDTNTSHIMPF 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21338929 21340164 - evm.model.ptg000010l.1307 HCH2g0197 539422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0197 411 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0197 411 Pfam U-box domain 10 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0197 411 SUPERFAMILY RING/U-box 6 79 - -
HCH2g0197 411 FunFam RING-type E3 ubiquitin transferase 10 82 - -
HCH2g0197 411 CDD RING-Ubox_PUB 11 63 IPR045210 -
HCH2g0197 411 PANTHER WDSAM1 PROTEIN 7 410 IPR045185 GO:0061630(InterPro)
HCH2g0197 411 SUPERFAMILY ARM repeat 164 402 IPR016024 -
HCH2g0197 411 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 274 313 IPR000225 GO:0005515(InterPro)
HCH2g0197 411 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0197 411 Gene3D - 126 391 IPR011989 -
HCH2g0197 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0197 HCH-Chr2:21338929 HCH7g1497 HCH-Chr7:47577991 7.80E-34 dispersed
HCH2g0197 HCH-Chr2:21338929 HCH2g0198 HCH-Chr2:21376052 8.00E-103 tandem
HCH14g0146 HCH-Chr14:24583284 HCH2g0197 HCH-Chr2:21338929 6.90E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0197 - - - 0.0