Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0230 ATGGCCGATGCTGAGGATATTCAGCCACTTGTTTGTGACAATGGAACCGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCAGTGTTTCCCAGTATTGTCGGTCGACCTCGTCACACTGGTGTCATGGTGGGGATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATCTGGCATCATACATTCTACAATGAGCTTCGTGTTGCACCAGAAGAACATCCGGTGCTTCTTACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAGATCATGTTTGAGACTTTTAATGTACCTGCCATGTATGTTGCCATCCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGTACAACAGGTATTGTGCTCGATTCTGGTGATGGTGTTAGTCACACTGTCCCAATCTATGAGGGTTATGCTCTACCCCATGCCATACTCCGTTTGGACCTTGCTGGTCGTGATTTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTATATGTTCACAACCACTGCCGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTCGCTCTCGATTATGAGCAGGAACTTGAGACTGCCAAGAGCAGCTCCTCAATTGAGAAGAACTATGAACTGCCTGATGGACAAGTCATCACAATCGGAGCTGAGAGATTCCGTTGCCCTGAAGTTCTGTTCCAGCCATCTCTCATTGGAATGGAAGCTGCTGGAATCCATGAGACAACCTACAATTCAATTATGAAGTGTGATGTGGATATCAGAAAGGATTTATATGGCAACATTGTTCTCAGTGGTGGTTCAACCATGTTCCCTGGTATTGCGGACCGAATGAGCAAAGAGATCACAGCTCTTGCTCCTAGCAGCATGAAAATTAAGGTTGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATCGGAGGGTCAATTCTCGCATCTCTCAGCACTTTCCAGCAGATGTGGATTTCAAAGGGCGAATATGATGAATCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA 1134 46.21 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31635800 31637284 - evm.model.ptg000010l.1274 HCH2g0230 539455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0230 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
HCH2g0230 377 Gene3D - 10 371 - -
HCH2g0230 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
HCH2g0230 377 FunFam Actin, alpha skeletal muscle 3 180 - -
HCH2g0230 377 FunFam Major actin 261 340 - -
HCH2g0230 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
HCH2g0230 377 PRINTS Actin signature 51 62 IPR004000 -
HCH2g0230 377 PRINTS Actin signature 63 85 IPR004000 -
HCH2g0230 377 PRINTS Actin signature 142 161 IPR004000 -
HCH2g0230 377 PRINTS Actin signature 28 37 IPR004000 -
HCH2g0230 377 PRINTS Actin signature 117 130 IPR004000 -
HCH2g0230 377 PRINTS Actin signature 238 254 IPR004000 -
HCH2g0230 377 PANTHER ACTIN 8 369 IPR004000 -
HCH2g0230 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
HCH2g0230 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
HCH2g0230 377 SMART actin_3 7 377 IPR004000 -
HCH2g0230 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
HCH2g0230 377 FunFam Actin, muscle 182 273 - -
HCH2g0230 377 Gene3D - 140 340 - -
HCH2g0230 377 Pfam Actin 5 377 IPR004000 -
HCH2g0230 377 Gene3D Actin; Chain A, domain 4 182 273 - -
HCH2g0230 377 FunFam Putative actin-related protein 5 341 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0151 HCH-Chr14:25266856 HCH2g0230 HCH-Chr2:31635800 9.50E-220 dispersed
HCH1g0460 HCH-Chr1:53127396 HCH2g0230 HCH-Chr2:31635800 7.80E-214 dispersed
HCH1g1103 HCH-Chr1:58681388 HCH2g0230 HCH-Chr2:31635800 1.10E-59 dispersed
HCH2g0230 HCH-Chr2:31635800 HCH9g0669 HCH-Chr9:4441415 2.10E-214 dispersed
HCH2g0230 HCH-Chr2:31635800 HCH2g1089 HCH-Chr2:53797478 7.10E-215 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0230 K10355 - csv:101215469 758.059