Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0250 ATGGCGACAAAGGCGCCTGTTGTAAAGGCCAATGGTACGGACGACACAATCGTCTGCTATGCGCCAACCATGATAACTACAAATGGGGTATGGCAAGGTGATAATCCTTTGGATTATTCTCTCCCTCTCTTCATCTTGCAGTTAACAATGGTGGTTGTAATGACCCGAGCACTCGTTTTCATTTTAAAACCCTTTCGCCAACCTCGAGTCATCTCTGAAATCATGGGTGGAGTGATTTTGGGGCCTTCAGTACTTGGGAGAAATAGTAGATTTGCAAACACAATATTTCCATTAAGAAGTGTAATGGTACTGGAAACAATGGCAAATATGGGACTTCTCTACTTTCTGTTTTTAGTGGGTGTGGAAATGGATCTCTCAGTAATTCGTCGAACTGGGAAAAAGGCAATGGCCATAGCTTTAGCTGGAATGGTTATTCCTTTCTCAATTGGTGCATTTTTTTCAATCAATTTACACAAAATGGATCCAAAAATGAGCTTCAGCTCTTATGTTTTGTTTCTTGGTGTTGCACTCTCAGTCACTGCTTTTCCAGTACTCGCTAGAGTTCTTGCAGAGCTTAAATTGATCAATTCAGAACTTGGAAGGATTGCTATGGCTTCTGCACTTTTCAATGATATGTGTGCTTGGGTTCTATTAGCTTTCGCCATTGCCTTATCAGAGAATAATGCCTCATCTTTGGCTTCTTTGTGGGTCGTATTATCAAGTGCAGGATTTGTTTTGTTTTGCCTTTTCGTTGTTAGACCAACTATCGCATGGATGATTAGAAGAACCCCAGAAGGAGAAAGTATTAGTGAGTTCTATATTTGTTTGATTCTCACAGGGGTTATGATCTCAGGATTTATAACTGATGCCATTGGGACTCATTCAGTTTTTGGTGCTTTTGTGTTTGGTTTAGTTATCCCAAATGGACCACTTGGGGTTACTCTAATTGAGAAACTTGAGGATTTTGTTTCCGGACTTTTACTACCCCTCTTCTTTGCCATAAGTGGGTTGAAGACTAATGTATATTCCATAAAAGGGTTTAAAACTTGGGCTTTTATTATATTTATCTCTATGCTTTCTTGTATTGGAAAAGTTATAGGCACTCTCATTGTCTCCGTTTGTTATCAGATGTCGTATCGCGAAGGAGTTACGTTAGGTTTGCTTATGAACACTAAAGGCCTTATTGAAATGATCATTCTCAACGTCGGAAAGGATCAAAAGGTGTTAGATGATCAAACATTTACAATTATGGTGATTGTAGCTCTCATTATGACAGGGATCATAACTCCTGCAGTTACCATAATATATAGGCCAACAAGAAGGTTTTTACCTTATAAGAAGCGAACCATCCAATCATCGAAACCAGATTCTGAGTTTAGAATATTAGTATGCATTCACACACCTCGAAATGTTCCAACAATCATCAACCTCCTTGATGCCACCCACCCAACTAAAAGATCTCCCATATGCATTTATGTGCTGCACTTGGTCGAACTCACGGGTCGAGCCTCTGCCATGCTTATAGTCCACAACACAAGAAAATCTGGTCACCCAGCGCTCAACAGAACCCAAGCTCAATCAGATCACATCATCAATGCGTTTGAGAATTATGAACAACAGATTGATTGTGTTTCAGTTCAGCCACTCACAGTCATTTCTCCATACTCGACAATGCACGAAGACATCTGCAATTTAGCCGAGGATAAACGCGTAGCCTTCATAATCATTCCATTCCACAAGCAACAAACAGTAGACGGAGGGATGGAAGCTACAAATCCAGCATTTAGATTAGTGAACCAAAATGTATTAGCCAATGCACCTTGCTCGGTCGGGATTCTTGTCGATCGAGGACTGAACGGCTCGACTCGAATGGCAGCAAACAAGGGCTCTCACCATAAAGTAATAGTGTTGTTCTTTGGTGGACAGGACGACAGAGAAGCTTTATCATATGCATGGAGAATGTCAGAACACGAAGGAGTTCAGTTGAATGTAATGAGATTCACACCTGGACAAGAAGCATTTGATCCGAAATCAGAAGCTAACCAACCGAGAATTTTAACCATGGATTCAGAGATTGATAGGGATAGGCTACTTGATGAAGAATGTATAAATGATTTCAGGACGAAGAATGGAAATAATGAGTCAGTTAAATACAGTGAGAAAGTGGTGAATAATGGGGAGGAGACAGTGGCAGCAATAAGGACAATGGATGATGATCATGATCTTTTTATAGTTGGGAGAGGAGAGGGAAAGATATCACGTCTCACTGCAGGCCTCACAGACTGGAGTGAATGCCCAGAACTTGGCGCCATTGGTGATTTGCTGGCTTCTTCAGATTTTGCTGCAACAGCTTCAGTTTTGGTAGTGCAACAGTTTAGTGGGGCTGGGGCAGCATTACATGGGGAAGCCGGAGGAACACCAGATAGCCAAGATGATCATGACCAACAACAATACAACAGTGTCAGACACATGAATCAAAGGCAACATCAACCAAGAGGCCAAGTTGTCTTGAACACATAA 2520 41.27 MATKAPVVKANGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRALVFILKPFRQPRVISEIMGGVILGPSVLGRNSRFANTIFPLRSVMVLETMANMGLLYFLFLVGVEMDLSVIRRTGKKAMAIALAGMVIPFSIGAFFSINLHKMDPKMSFSSYVLFLGVALSVTAFPVLARVLAELKLINSELGRIAMASALFNDMCAWVLLAFAIALSENNASSLASLWVVLSSAGFVLFCLFVVRPTIAWMIRRTPEGESISEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVYSIKGFKTWAFIIFISMLSCIGKVIGTLIVSVCYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTIMVIVALIMTGIITPAVTIIYRPTRRFLPYKKRTIQSSKPDSEFRILVCIHTPRNVPTIINLLDATHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGHPALNRTQAQSDHIINAFENYEQQIDCVSVQPLTVISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSTRMAANKGSHHKVIVLFFGGQDDREALSYAWRMSEHEGVQLNVMRFTPGQEAFDPKSEANQPRILTMDSEIDRDRLLDEECINDFRTKNGNNESVKYSEKVVNNGEETVAAIRTMDDDHDLFIVGRGEGKISRLTAGLTDWSECPELGAIGDLLASSDFAATASVLVVQQFSGAGAALHGEAGGTPDSQDDHDQQQYNSVRHMNQRQHQPRGQVVLNT 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38301674 38304749 - evm.model.ptg000010l.1254 HCH2g0250 539475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0250 839 PANTHER CATION/H + ANTIPORTER 19 792 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
HCH2g0250 839 Gene3D - 43 441 IPR038770 -
HCH2g0250 839 Gene3D - 480 766 - -
HCH2g0250 839 Pfam Sodium/hydrogen exchanger family 57 433 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
HCH2g0250 839 FunFam Cation/H(+) antiporter 15 43 443 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0250 HCH-Chr2:38301674 HCH6g1235 HCH-Chr6:46736001 2.30E-205 dispersed
HCH4g1209 HCH-Chr4:8107414 HCH2g0250 HCH-Chr2:38301674 7.60E-102 transposed
HCH5g0312 HCH-Chr5:1958812 HCH2g0250 HCH-Chr2:38301674 1.00E-90 transposed
HCH9g0047 HCH-Chr9:271649 HCH2g0250 HCH-Chr2:38301674 3.30E-148 transposed
HCH9g0653 HCH-Chr9:4341798 HCH2g0250 HCH-Chr2:38301674 2.50E-183 transposed
HCH1g0328 HCH-Chr1:49572483 HCH2g0250 HCH-Chr2:38301674 1.10E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0250 K26731 - csv:101219265 1352.42