Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0250 ATGGCGACAAAGGCGCCTGTTGTAAAGGCCAATGGTACGGACGACACAATCGTCTGCTATGCGCCAACCATGATAACTACAAATGGGGTATGGCAAGGTGATAATCCTTTGGATTATTCTCTCCCTCTCTTCATCTTGCAGTTAACAATGGTGGTTGTAATGACCCGAGCACTCGTTTTCATTTTAAAACCCTTTCGCCAACCTCGAGTCATCTCTGAAATCATGGGTGGAGTGATTTTGGGGCCTTCAGTACTTGGGAGAAATAGTAGATTTGCAAACACAATATTTCCATTAAGAAGTGTAATGGTACTGGAAACAATGGCAAATATGGGACTTCTCTACTTTCTGTTTTTAGTGGGTGTGGAAATGGATCTCTCAGTAATTCGTCGAACTGGGAAAAAGGCAATGGCCATAGCTTTAGCTGGAATGGTTATTCCTTTCTCAATTGGTGCATTTTTTTCAATCAATTTACACAAAATGGATCCAAAAATGAGCTTCAGCTCTTATGTTTTGTTTCTTGGTGTTGCACTCTCAGTCACTGCTTTTCCAGTACTCGCTAGAGTTCTTGCAGAGCTTAAATTGATCAATTCAGAACTTGGAAGGATTGCTATGGCTTCTGCACTTTTCAATGATATGTGTGCTTGGGTTCTATTAGCTTTCGCCATTGCCTTATCAGAGAATAATGCCTCATCTTTGGCTTCTTTGTGGGTCGTATTATCAAGTGCAGGATTTGTTTTGTTTTGCCTTTTCGTTGTTAGACCAACTATCGCATGGATGATTAGAAGAACCCCAGAAGGAGAAAGTATTAGTGAGTTCTATATTTGTTTGATTCTCACAGGGGTTATGATCTCAGGATTTATAACTGATGCCATTGGGACTCATTCAGTTTTTGGTGCTTTTGTGTTTGGTTTAGTTATCCCAAATGGACCACTTGGGGTTACTCTAATTGAGAAACTTGAGGATTTTGTTTCCGGACTTTTACTACCCCTCTTCTTTGCCATAAGTGGGTTGAAGACTAATGTATATTCCATAAAAGGGTTTAAAACTTGGGCTTTTATTATATTTATCTCTATGCTTTCTTGTATTGGAAAAGTTATAGGCACTCTCATTGTCTCCGTTTGTTATCAGATGTCGTATCGCGAAGGAGTTACGTTAGGTTTGCTTATGAACACTAAAGGCCTTATTGAAATGATCATTCTCAACGTCGGAAAGGATCAAAAGGTGTTAGATGATCAAACATTTACAATTATGGTGATTGTAGCTCTCATTATGACAGGGATCATAACTCCTGCAGTTACCATAATATATAGGCCAACAAGAAGGTTTTTACCTTATAAGAAGCGAACCATCCAATCATCGAAACCAGATTCTGAGTTTAGAATATTAGTATGCATTCACACACCTCGAAATGTTCCAACAATCATCAACCTCCTTGATGCCACCCACCCAACTAAAAGATCTCCCATATGCATTTATGTGCTGCACTTGGTCGAACTCACGGGTCGAGCCTCTGCCATGCTTATAGTCCACAACACAAGAAAATCTGGTCACCCAGCGCTCAACAGAACCCAAGCTCAATCAGATCACATCATCAATGCGTTTGAGAATTATGAACAACAGATTGATTGTGTTTCAGTTCAGCCACTCACAGTCATTTCTCCATACTCGACAATGCACGAAGACATCTGCAATTTAGCCGAGGATAAACGCGTAGCCTTCATAATCATTCCATTCCACAAGCAACAAACAGTAGACGGAGGGATGGAAGCTACAAATCCAGCATTTAGATTAGTGAACCAAAATGTATTAGCCAATGCACCTTGCTCGGTCGGGATTCTTGTCGATCGAGGACTGAACGGCTCGACTCGAATGGCAGCAAACAAGGGCTCTCACCATAAAGTAATAGTGTTGTTCTTTGGTGGACAGGACGACAGAGAAGCTTTATCATATGCATGGAGAATGTCAGAACACGAAGGAGTTCAGTTGAATGTAATGAGATTCACACCTGGACAAGAAGCATTTGATCCGAAATCAGAAGCTAACCAACCGAGAATTTTAACCATGGATTCAGAGATTGATAGGGATAGGCTACTTGATGAAGAATGTATAAATGATTTCAGGACGAAGAATGGAAATAATGAGTCAGTTAAATACAGTGAGAAAGTGGTGAATAATGGGGAGGAGACAGTGGCAGCAATAAGGACAATGGATGATGATCATGATCTTTTTATAGTTGGGAGAGGAGAGGGAAAGATATCACGTCTCACTGCAGGCCTCACAGACTGGAGTGAATGCCCAGAACTTGGCGCCATTGGTGATTTGCTGGCTTCTTCAGATTTTGCTGCAACAGCTTCAGTTTTGGTAGTGCAACAGTTTAGTGGGGCTGGGGCAGCATTACATGGGGAAGCCGGAGGAACACCAGATAGCCAAGATGATCATGACCAACAACAATACAACAGTGTCAGACACATGAATCAAAGGCAACATCAACCAAGAGGCCAAGTTGTCTTGAACACATAA 2520 41.27 MATKAPVVKANGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRALVFILKPFRQPRVISEIMGGVILGPSVLGRNSRFANTIFPLRSVMVLETMANMGLLYFLFLVGVEMDLSVIRRTGKKAMAIALAGMVIPFSIGAFFSINLHKMDPKMSFSSYVLFLGVALSVTAFPVLARVLAELKLINSELGRIAMASALFNDMCAWVLLAFAIALSENNASSLASLWVVLSSAGFVLFCLFVVRPTIAWMIRRTPEGESISEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVYSIKGFKTWAFIIFISMLSCIGKVIGTLIVSVCYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTIMVIVALIMTGIITPAVTIIYRPTRRFLPYKKRTIQSSKPDSEFRILVCIHTPRNVPTIINLLDATHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGHPALNRTQAQSDHIINAFENYEQQIDCVSVQPLTVISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSTRMAANKGSHHKVIVLFFGGQDDREALSYAWRMSEHEGVQLNVMRFTPGQEAFDPKSEANQPRILTMDSEIDRDRLLDEECINDFRTKNGNNESVKYSEKVVNNGEETVAAIRTMDDDHDLFIVGRGEGKISRLTAGLTDWSECPELGAIGDLLASSDFAATASVLVVQQFSGAGAALHGEAGGTPDSQDDHDQQQYNSVRHMNQRQHQPRGQVVLNT 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38301674 38304749 - evm.model.ptg000010l.1254 HCH2g0250 539475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0250 839 PANTHER CATION/H + ANTIPORTER 19 792 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
HCH2g0250 839 Gene3D - 43 441 IPR038770 -
HCH2g0250 839 Gene3D - 480 766 - -
HCH2g0250 839 Pfam Sodium/hydrogen exchanger family 57 433 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
HCH2g0250 839 FunFam Cation/H(+) antiporter 15 43 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0250 K26731 - - csv:101219265 1352.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0250 HCH-Chr2:38301674 HCH6g1235 HCH-Chr6:46736001 2.30E-205 dispersed
HCH4g1209 HCH-Chr4:8107414 HCH2g0250 HCH-Chr2:38301674 7.60E-102 transposed
HCH5g0312 HCH-Chr5:1958812 HCH2g0250 HCH-Chr2:38301674 1.00E-90 transposed
HCH9g0047 HCH-Chr9:271649 HCH2g0250 HCH-Chr2:38301674 3.30E-148 transposed
HCH9g0653 HCH-Chr9:4341798 HCH2g0250 HCH-Chr2:38301674 2.50E-183 transposed
HCH1g0328 HCH-Chr1:49572483 HCH2g0250 HCH-Chr2:38301674 1.10E-148 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0250 . 13 797 Antiporter Super Family AT2G13620 72.8 0.0e+00 1131.7
HCH9g0653 . 76 833 Antiporter Super Family AT3G53720 67.1 1.6e-277 952.2
HCH6g1235 . 83 780 Antiporter Super Family AT3G53720 50.1 3.2e-182 635.6
HCH6g1235 . 1 799 Antiporter Super Family AT5G41610 67.8 3.8e-306 1047.3
HCH6g1234 . 1 799 Antiporter Super Family AT5G41610 66.1 4.8e-293 1003.8
HCH9g0653 . 8 826 Antiporter Super Family AT5G41610 50.2 1.7e-205 713.0
HCH6g1235 . 1 797 Antiporter Super Family AT4G23700 65.7 2.0e-294 1008.4
HCH6g1234 . 10 798 Antiporter Super Family AT4G23700 59.5 6.4e-261 897.1
HCH6g1235 . 2 781 Antiporter Super Family AT3G17630 64.9 4.4e-275 944.1
HCH6g1234 . 5 781 Antiporter Super Family AT3G17630 61.8 1.6e-264 909.1
HCH9g0653 . 8 812 Antiporter Super Family AT3G17630 50.7 3.0e-199 692.2
HCH6g1235 . 11 784 Antiporter Super Family AT1G64170 59.6 3.4e-246 848.2
HCH6g1234 . 4 781 Antiporter Super Family AT1G64170 55.3 2.1e-224 775.8
HCH2g0250 . 13 797 Antiporter Super Family AT2G13620 72.8 0.0e+00 1131.7
HCH6g1235 . 11 784 Antiporter Super Family AT1G64170 59.6 3.4e-246 848.2
HCH6g1234 . 4 781 Antiporter Super Family AT1G64170 55.3 2.1e-224 775.8
HCH6g1235 . 1 797 Antiporter Super Family AT4G23700 65.7 2.0e-294 1008.4
HCH6g1234 . 10 798 Antiporter Super Family AT4G23700 59.5 6.4e-261 897.1
HCH6g1235 . 1 799 Antiporter Super Family AT5G41610 67.8 3.8e-306 1047.3
HCH6g1234 . 1 799 Antiporter Super Family AT5G41610 66.1 4.8e-293 1003.8
HCH9g0653 . 8 826 Antiporter Super Family AT5G41610 50.2 1.7e-205 713.0
HCH6g1235 . 2 781 Antiporter Super Family AT3G17630 64.9 4.4e-275 944.1
HCH6g1234 . 5 781 Antiporter Super Family AT3G17630 61.8 1.6e-264 909.1
HCH9g0653 . 8 812 Antiporter Super Family AT3G17630 50.7 3.0e-199 692.2
HCH9g0653 . 76 833 Antiporter Super Family AT3G53720 67.1 1.6e-277 952.2
HCH6g1235 . 83 780 Antiporter Super Family AT3G53720 50.1 3.2e-182 635.6
HCH4g1209 . 35 794 Antiporter Super Family AT3G52080 55.4 1.4e-241 832.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39