Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0262 ATGGAGCATTTCCTCGTCTCTCTCTTGATCCTCTTCATTTCCTGCATCTCTATAGCTCTCTTCATCCTCTTTTACAAACACAAATCCAAATTTGCGTATCCAAACATTCCTCCAGGCAGAATCGGGTATCCTGTAATTGGCGAAAGCCTGGAATTCTTATCCACTGGTTGGAAAGGTGAGCCAGAAAAGTTCATTTTCGATCGGCTTAGCAAGTATAAATCGGAGATCTTTAAAACTTCAATCGTCGGAGAACCCGCCGCCATTTTCTGCGGTCCGGTCTGCAACAAGTTCTTATTCTCTAATGAGAATAAACTTGTCAATGCATGGTGGCCGGATTCCGTCAATAAAATCTTTCCTTCTTCTACGCAAACAAGCTCCAAAGAAGAAGCTATAAAACTCAAAAAACTCCTTCCTCAGTTCCTTAAACCAGAAGCTCTGCAACGATATATCGGTATAATGGACGCCATCGCTCAAAAACACTTTGCTTCCTCTTGGGAAAACAAAGAAGAAATTATCGTTTACCCCCTCGCTAAAAATTTCACTTTTTCACTGGCGTGTCGATTGTTCGTGAGCGTGGAGGATGAGATCCATGTGGAGAAGTTGTCAGGACCATTCCAGCACATAGCATCGGGAATCATATCGATGCCGATTAACTTGCCTGGAACAGCGTTTAACCGAGCCATAAAGGCATCGAACTTTATAAGAAATGAGCTAATGGCGATCGTGAAGCAAAGGAAGTGTGATTTGGGTGAAGGGAAGGCTTCGCCAACACAAGATATTCTTTCCCATATGCTTCTTACTTGCGATGAAGATGGGAAACACATGATTGAAAGTGATATAGCAGATAAGATTCTGGGTTTATTGATCGGTGGCCATGACACTGCAAGCGCCTCCTGCACTTTCATTGTCAAATATCTCGCTGAGCTTCCTCACATCTACGATGGAGTTTACAAGGAGCAAATGGAAATAGCAAAATCGAAAGCAGAAGGGGAATTATTGAACTGGGACGACATTCAGAAGATGAAGTACTCATGGAACGTAGCTTGTGAAGTGTTAAGACTTGCTTCCCCTCTTCAAGGTGCCTTTAGGGAGGCAATTAATGACTTTGTTTTCAATGGTTTCTATATTCCAAAGGGCTGGAAGCTATATTGGAGTTCAAACTCAACGCACAAAAATCCAGACTACTTTCCAAATCCATATAAGTTCGATCCATCGAGATTCGAAGGGAACGGTCCAGCTCCTTACACGTTTGTGCCGTTCGGCGGAGGGCCAAGGATGTGTCCAGGGAAAGAGTACGCTAGACTTGAAATTCTTGTTTTCATGCACAATTTGGTGAAACGATTCAAATGGACAAAAGTACTTGGAAAAGAGAAAATCATTGTAGATCCTATGCCCATTCCAGAGCACGGCCTTCCCGTTCGTCTTTTTCCTCATAAAAGCACTGTATAA 1449 42.86 MEHFLVSLLILFISCISIALFILFYKHKSKFAYPNIPPGRIGYPVIGESLEFLSTGWKGEPEKFIFDRLSKYKSEIFKTSIVGEPAAIFCGPVCNKFLFSNENKLVNAWWPDSVNKIFPSSTQTSSKEEAIKLKKLLPQFLKPEALQRYIGIMDAIAQKHFASSWENKEEIIVYPLAKNFTFSLACRLFVSVEDEIHVEKLSGPFQHIASGIISMPINLPGTAFNRAIKASNFIRNELMAIVKQRKCDLGEGKASPTQDILSHMLLTCDEDGKHMIESDIADKILGLLIGGHDTASASCTFIVKYLAELPHIYDGVYKEQMEIAKSKAEGELLNWDDIQKMKYSWNVACEVLRLASPLQGAFREAINDFVFNGFYIPKGWKLYWSSNSTHKNPDYFPNPYKFDPSRFEGNGPAPYTFVPFGGGPRMCPGKEYARLEILVFMHNLVKRFKWTKVLGKEKIIVDPMPIPEHGLPVRLFPHKSTV 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39136812 39142250 - evm.model.ptg000010l.1242 HCH2g0262 539487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0262 482 PRINTS E-class P450 group I signature 417 427 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH2g0262 482 PRINTS E-class P450 group I signature 279 296 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH2g0262 482 PRINTS E-class P450 group I signature 427 450 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH2g0262 482 PRINTS E-class P450 group I signature 385 409 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH2g0262 482 CDD CYP90-like 68 477 - -
HCH2g0262 482 Gene3D Cytochrome P450 26 477 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH2g0262 482 FunFam Taxadiene 5-alpha hydroxylase 27 478 - -
HCH2g0262 482 PANTHER CYTOCHROME P450 26 35 453 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
HCH2g0262 482 Pfam Cytochrome P450 37 453 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH2g0262 482 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 420 429 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH2g0262 482 PRINTS P450 superfamily signature 418 427 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH2g0262 482 PRINTS P450 superfamily signature 290 307 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH2g0262 482 PRINTS P450 superfamily signature 427 438 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH2g0262 482 SUPERFAMILY Cytochrome P450 32 477 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0245 HCH-Chr2:37751385 HCH2g0262 HCH-Chr2:39136812 1.20E-97 dispersed
HCH2g0246 HCH-Chr2:37816321 HCH2g0262 HCH-Chr2:39136812 3.80E-290 dispersed
HCH2g0262 HCH-Chr2:39136812 HCH8g1097 HCH-Chr8:46768633 1.20E-203 dispersed
HCH1g0373 HCH-Chr1:51158760 HCH2g0262 HCH-Chr2:39136812 2.50E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0262 K20667 - csv:101206033 809.29