Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0293 ATGGAGGCTGCTGGTGTTGATCAGTTTCATTTTCAGCCACCCAACACCAAGTTTGAATACACTCCAACATGGATAGTTGCTGTTGTTTGCTCTATCATTGTTCTCATTTCCTTTTGCGCTGAGCGTGGTCTTCATCACCTTGGAAAGTTATTATCACATAAAGGGCAAGATGCATTGTACGAAGCCTTGCAAAAACTAAAAGAAGAATTGATGCTATTGGGATTCATCTCTCTATTATTGACTGTGTTCCAAGGTGTAATAAGTCACTTTTGTATGCCACCAAATTTTGCAAACTACATGCTTCCATGCAAGAGGAAGGCATCATCATCGGTTTCTACTCACCATTTCTCATCTACTCCTTCCACCACCAATAACATTGGGCGTCGCCTCTTGTCCTCCCCTAGCAATGTTGCACATTGTTTACAGAAAGGGAAGGTTCCATTGCTTTCATTGGAAGCATTGCATCAACTTCATATTTTCATATTTGTGTTGACCGTTGCTCACGTTATCTTCTGTGCTACCACCATGCTTCTTGCAGCTGCCAAGATACGACAGTGGAAGGTTTGGGAGGATTCTATTCATCATGATGTTTCTCGTTCTAAAAAGGAAAAAATTAATAAGGATTTTGTGGAAGAACGCGTCCAAGGATACTGGAGAAGAGCTGCTGTCATAAGTTGGATGAGAGCATTTGCAAAGCAGTTCCATGGATCCATCACAAAGTCCGATTACCTCTCTCTTCGACGAGGCTTTATCATGGAACATTGTCCTGGAAATAGTGATTTCGATTTCTATGGTTACATGACACGTACACTTGAAAATGATTTCAAAAAAGTTGTTGGTATAAGTTGGTATCTTTGGGTCTTTGTTGTGCTTTTCTTGCTACTTAATCTTGAAGGGTGGCATACTTATTTTTGGATGTCATTTTTACCATTGATTCTGCTGCTTTTAGTTGGGGCAAAGTTGGAACATATAATAACAAGAATGGCTCAAGAATCAGACAAGAGAACAGAAGACAATAATATTGAAGCACAACAACAACAAAAGGAAGAAGATGAGCATAAGAAGAAGAAGAAGAAGAGCCCTGTTCAAGTCCAAGTCAAGCCTTCAGACCAACACTTTTGGTTTTCAAGTCCTTCCCTTGTTCTTAACTTGATTCACTTCATTCTCTTTCAGAACTCTTTTGAGATTGCTTTCTTCTTCTGGATTTGGACAACTTATGGATTCAAGTCATGCATTATGGAGAAACCTGTCTTCATCATCACCAGACTGTTTATGGGTGTGCTTGTTCAAGTCCTTTGCAGTTTTGGCACCTTGCCATTGTATACCATTGTCACTCAGATGGGAAGTCAATATAAGAAAGGGATGTTTGAGAAAACAGTGGAAGAAACTCTGATAGCGTGGGCTGAAGAAACAAGGCGCAAGAGAAATGCTGATTCTGAAAGATCACTTGTTTATGACTTTGACTCTCAGGAATCATCTCAACATGTTCAAATTCCTCAATCAACTGAAGCTTTCAGCATTGTCACTAACTACACTAATAATGACTCTGTTGCCTCTGATCCTCAGCCACATTAG 1575 39.87 MEAAGVDQFHFQPPNTKFEYTPTWIVAVVCSIIVLISFCAERGLHHLGKLLSHKGQDALYEALQKLKEELMLLGFISLLLTVFQGVISHFCMPPNFANYMLPCKRKASSSVSTHHFSSTPSTTNNIGRRLLSSPSNVAHCLQKGKVPLLSLEALHQLHIFIFVLTVAHVIFCATTMLLAAAKIRQWKVWEDSIHHDVSRSKKEKINKDFVEERVQGYWRRAAVISWMRAFAKQFHGSITKSDYLSLRRGFIMEHCPGNSDFDFYGYMTRTLENDFKKVVGISWYLWVFVVLFLLLNLEGWHTYFWMSFLPLILLLLVGAKLEHIITRMAQESDKRTEDNNIEAQQQQKEEDEHKKKKKKSPVQVQVKPSDQHFWFSSPSLVLNLIHFILFQNSFEIAFFFWIWTTYGFKSCIMEKPVFIITRLFMGVLVQVLCSFGTLPLYTIVTQMGSQYKKGMFEKTVEETLIAWAEETRRKRNADSERSLVYDFDSQESSQHVQIPQSTEAFSIVTNYTNNDSVASDPQPH 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 41922003 41939062 + evm.model.ptg000010l.1211 HCH2g0293 539518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0293 524 Coils Coil 334 354 - -
HCH2g0293 524 MobiDBLite consensus disorder prediction 335 358 - -
HCH2g0293 524 MobiDBLite consensus disorder prediction 335 364 - -
HCH2g0293 524 Pfam Mlo family 16 494 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
HCH2g0293 524 PANTHER MLO-LIKE PROTEIN 1 15 497 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0293 HCH-Chr2:41922003 HCH6g1335 HCH-Chr6:47461147 2.10E-132 dispersed
HCH2g0293 HCH-Chr2:41922003 HCH2g1166 HCH-Chr2:54237510 5.00E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0293 K08472 - cit:102625873 561.607