Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0315 ATGCCTGATACTAGTGGCAAGATATCTCCCTGTCAATTATTACATGAAGTAGAAGATAGAGAAATTCTTATGTCTTCAGCTTTCTCTAGATGGAAATGGAATTCTTCAAGGCTAATCATTTATGGGTTGCTATTCTTCTCATTCTTGAGGTTGAATTATGCATCAACAGATCCTGATGTGGAAGGGGAAGCTTTGGTTGATTTGTTGTCGGCACTCAATGATTCCAATCATCAAATAACTGATTGGAATTATCACTTTGTAAGCCCTTGCTTTAGTTGGTCTCATATTACCTGCAGAAATGGAAATGTCACTTCCTTGAGCTTGGATTCAGTTGGATTTTCAGGATCATTTTCTCCTTCAATTACCAAACTGAAATTTTTGTCTAGCTTGGATTTGCAGAATAATAACATATCAGATGTTCTACCAGATTATCTAGCTAACATGACTAACCTACAGAATTTGAATCTTGCAAATAATAACTTCAATGGACCTATACCTGCTGCTTGGGGTCAACTTTATGGTCTGAAGCATCTGGATCTCTCAGATAACAACTTAACTGGAGAAGTCCCAGCGCAATTGTTTTCAGTTCCAATGTTCAATTTTTCAGGAACTCGTTTAACTTGTGGCGTTAGTTTGGATAAGCCTTGTGTTTCCAGCCCTCCACGCCGGGCTTCTGCAAAAAGTTCAAAGTTTGGAGTAGTTGCAAGTTCTGCAAGTTGTGGGGGATTCTTACTTCTGTCCATTGGTTTTTTCTGTGCTTATAGATGCTTCTACAGGCATAAGCTTACGGATTCTAAATTTGTTGATGTTGCTGGTGAAGATGACTGTAAAATTTGCTTTGGGCAAATCAGAAGATTTTCTTTGCGTGAAATCCAACTTGCGACTGATAACTTTAATGAAACCAATATTATTGGCCAAGGAGGCTTTGGAAAAGTATATAAAGGCATCCTCTCGGATGCCACCAAGGTTGCTGTGAAACGACTAACCGATTATAATAGCCCTGGTGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTGATAAGCGTTGCTGTGCATCGGAATCTCCTCCGATTGATCGGGTTTTGTACAACCTCTTCTGAGAGAATCCTTGTTTATCCATTCATGCAGAATCTTAGTGTGGCATATCGCTTGAGGGATTTAAAACCTGGAGAAAGAAGCTTGGACTGGCCCGCAAGGAAACGAATTGCTTTTGGTGCAGCACATGGTTTGGAGTATTTACATGAGCACTGTAATCCTAAGATCATACATCGCGATCTGAAGGCTGCAAATATCTTATTAGATGATGACTTTGAAGCTGTTCTTGGAGATTTTGGGCTGGCGAAGCTAGTTGATACTAAATTGACTCATATTACCACTCAAGTGCGTGGTACAATGGGTCACATTGCCCCAGAATACTTGTCCACTGGAAAATCGTCAGAAAAGACAGATGTTTTTGGATACGGTATAACCCTTCTTGAACTCGTAACTGGGCAGCGAGCAATAGATTTCTCCCGCCTCGAAGAGGAGGAGGATGTTCTTCTGCTTGATCATATAAAGAAGTTGCTGAGGGAGAATAGGCTTGAAGATGTTGTGGATAAAAACCTAAAGAGTTATGATGCGAAAGAAGTTGAAAACATAGTTCAGGTGGCCTTGCTTTGCACGCAAAGCTCACCGGAGGATCGGCCGAGGATGGCGGAAGTCGTGAATCTACTGCATGGAAAAGGACTGGCATGTAAATGGGCAGAGTGGATGCATCTTGAAGAGGTGAGAGATCAGGAAGTATCCCTATTATGTCACCAATTCGTTTGGACTGAAGAGTCAACCCATGATCAAGAAGCCATACAGTTATCTAAAGCAAGATAG 1863 41.22 MPDTSGKISPCQLLHEVEDREILMSSAFSRWKWNSSRLIIYGLLFFSFLRLNYASTDPDVEGEALVDLLSALNDSNHQITDWNYHFVSPCFSWSHITCRNGNVTSLSLDSVGFSGSFSPSITKLKFLSSLDLQNNNISDVLPDYLANMTNLQNLNLANNNFNGPIPAAWGQLYGLKHLDLSDNNLTGEVPAQLFSVPMFNFSGTRLTCGVSLDKPCVSSPPRRASAKSSKFGVVASSASCGGFLLLSIGFFCAYRCFYRHKLTDSKFVDVAGEDDCKICFGQIRRFSLREIQLATDNFNETNIIGQGGFGKVYKGILSDATKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTSSERILVYPFMQNLSVAYRLRDLKPGERSLDWPARKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKLTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLLRENRLEDVVDKNLKSYDAKEVENIVQVALLCTQSSPEDRPRMAEVVNLLHGKGLACKWAEWMHLEEVRDQEVSLLCHQFVWTEESTHDQEAIQLSKAR 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43103121 43112515 - evm.model.ptg000010l.1189 HCH2g0315 539540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0315 620 SMART serkin_6 298 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0315 620 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
HCH2g0315 620 FunFam Leucine-rich repeat receptor-like kinase 60 172 - -
HCH2g0315 620 Pfam Leucine rich repeat 127 185 IPR001611 GO:0005515(InterPro)
HCH2g0315 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0315 620 ProSiteProfiles Protein kinase domain profile. 298 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0315 620 SMART LRR_typ_2 148 171 IPR003591 -
HCH2g0315 620 SMART LRR_typ_2 124 147 IPR003591 -
HCH2g0315 620 SMART LRR_typ_2 172 196 IPR003591 -
HCH2g0315 620 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 45 619 - -
HCH2g0315 620 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524(InterPro)
HCH2g0315 620 SUPERFAMILY Protein kinase-like (PK-like) 279 571 IPR011009 -
HCH2g0315 620 Pfam Protein tyrosine and serine/threonine kinase 302 570 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0315 620 Gene3D Transferase(Phosphotransferase) domain 1 375 590 - -
HCH2g0315 620 FunFam Somatic embryogenesis receptor-like kinase 1 375 591 - -
HCH2g0315 620 FunFam Somatic embryogenesis receptor kinase 1 267 374 - -
HCH2g0315 620 SUPERFAMILY L domain-like 62 203 - -
HCH2g0315 620 Gene3D Ribonuclease Inhibitor 58 218 IPR032675 -
HCH2g0315 620 Pfam Leucine rich repeat N-terminal domain 61 98 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1226 HCH-Chr13:39824385 HCH2g0315 HCH-Chr2:43103121 2.60E-174 dispersed
HCH2g0315 HCH-Chr2:43103121 HCH4g0034 HCH-Chr4:212341 3.00E-114 dispersed
HCH2g0315 HCH-Chr2:43103121 HCH5g0746 HCH-Chr5:5435550 2.20E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81315 PF00069 Pkinase 1.50E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0315 - - - 0.0