Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0316 ATGGCTGCTCCTCCAACCTCACCGTTCGGCGGTTCGGCATCGGTTCCGATATGGTTAAACAAAGGAGACAACGCATGGCAAATGATATCAGCAACTCTAGTCGGACTTCAAAGCGTTCCAGGTCTAGTAATTCTGTACGGAAGCATGGTAAAGAAGAAATGGGCAGTTAACTCAGCTTTCATGGCTCTATACGCTTTCGCCGCGGTAATCATCTGCTGGGTGACTTGGGGTTACAAGATGTCATTCGGGGAAAAACTCCTACCATTCTGGGGCAGGGGCGGGCCGGCTCTCGGTCAGAAGTTTCTTTTAAAACAGGCGATTTTGCCGGAAACGACGCAGCGTTTTAATGATGGGAATGTGGAAACAGATATGATCCGTGCGTTTTATCCGATGGCGACGATGGTTTGGTTTCAATGTGTGTTTGCGGCGATAACAGTGATAATATTGGGGGGGTCGGTGTTGGCGAGAATGAATTTCAAAGCGTGGATGATGTTTGTGCCGTTATGGTTGACGTTTTCGTATACGGTATCGGCGTTTAGTTTGTGGGGAGGAGGGTTTTTGTTTCATTGGGGAGTCATGGATTATTCAGGTGGATATGTCATTCATCTTTCTTCTGGGACTGCTGGCTTTGTTGCTGCTTATTGGGTTGGGCCAAGAGCTAAAAATGACAGAGAGAGATTTCCTCCAAACAACGTCCTTCTGATGCTAGCAGGAGCTGGTCTTTTATGGCTAGGATGGGCTGGTTTCAACGGTGGAGATCCATACTCCGCCAACATAGATTCCTCCATCGCCGTTCTCAATACCAACATATGCGCCGCCACCAGCCTTCTCATTTGGACAACACTCGATGTCATATTCTTTAACAAACCGTCAGTTATAGGAGCCGTACAAGGCATGATCACAGGCCTCGTTTGCATTACACCGGCTGCAGGTCTTGTTCAAGGCTGGGCTTCCATTATTATGGGAATTCTCTCTGGCAGTATTCCATGGTTTACCATGATGGTTTTACACAAGAAATCTAAACTCCTTCAAAACGTTGATGATACGTTAGGAGTCTTCCACACTCATGCGGTTGCTGGCTTTCTCGGTGGAATTCTAACTGGTCTCTTTGCTGAGCCTCAATTATGTGATTTGTTTTTACCAGTTACTAATTCAAGAGGTGGTGTTTATGGAGGGTCTGGAGGGATTCAAATAGTTAAACAAATCGTTGGTGGATTGTTTGTTGTGGGATGGAATGTGGTAGTGACATCTGTCATTTGTCTTGTTATTAAAATGGTGGTTCCATTGAGAATGCCAGATGATCAATTGTTGATAGGAGATGATGCTGTGCATGGAGAAGAAGGATATGCTTTATGGGGAGATGGGGAGAAATATGATGCTACTAAACATTTGATTTATTCTCAGGATCATAGTTTTCATCCTGTGGTGTCCAGTAGTGCTACTCAAGTTGTGTGA 1455 45.29 MAAPPTSPFGGSASVPIWLNKGDNAWQMISATLVGLQSVPGLVILYGSMVKKKWAVNSAFMALYAFAAVIICWVTWGYKMSFGEKLLPFWGRGGPALGQKFLLKQAILPETTQRFNDGNVETDMIRAFYPMATMVWFQCVFAAITVIILGGSVLARMNFKAWMMFVPLWLTFSYTVSAFSLWGGGFLFHWGVMDYSGGYVIHLSSGTAGFVAAYWVGPRAKNDRERFPPNNVLLMLAGAGLLWLGWAGFNGGDPYSANIDSSIAVLNTNICAATSLLIWTTLDVIFFNKPSVIGAVQGMITGLVCITPAAGLVQGWASIIMGILSGSIPWFTMMVLHKKSKLLQNVDDTLGVFHTHAVAGFLGGILTGLFAEPQLCDLFLPVTNSRGGVYGGSGGIQIVKQIVGGLFVVGWNVVVTSVICLVIKMVVPLRMPDDQLLIGDDAVHGEEGYALWGDGEKYDATKHLIYSQDHSFHPVVSSSATQVV 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43114283 43125794 - evm.model.ptg000010l.1188 HCH2g0316 539541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0316 484 FunFam Ammonium transporter 9 452 - -
HCH2g0316 484 ProSitePatterns Ammonium transporters signature. 194 219 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH2g0316 484 Gene3D Ammonium transporter AmtB like domains 10 452 IPR029020 -
HCH2g0316 484 NCBIfam ammonium transporter 23 449 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH2g0316 484 Pfam Ammonium Transporter Family 25 449 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH2g0316 484 PANTHER AMMONIUM TRANSPORTER MEP2 16 461 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
HCH2g0316 484 SUPERFAMILY Ammonium transporter 18 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0064 HCH-Chr11:1003732 HCH2g0316 HCH-Chr2:43114283 4.40E-201 dispersed
HCH2g0316 HCH-Chr2:43114283 HCH4g0415 HCH-Chr4:2704473 3.70E-168 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0316 K03320 - rcu:8280769 798.119