Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0350 ATGATATCTATAGCTCCATCACTGGATGGCCAACAGTCTGAAACCTCCACCAAAATCTCATCTTCTCAGTCTCGATCTAATGCCGCCGATGAAACCACCCATGTTTTCCGATCAAAATTACCCGATATTCACATCCCTAACCACCTCCCCCTCCACACTTACTGCTTTCAAAACCTCTCCGAATACTCAGAAAGGCCTTGTTTGATTGTTGGCTCCACCGGCAAAACCTATTCCTATTCTCAAACCCATCTCATTTCTAAGAAAACTGCTGCTTTTTTCTCCAAAATCGGGGTCAAGACTGGCGATGTCATAATGATTCTCCTCCAGAACTGTGCCGAGTTCGTATTCTCGTTCATGGGTGCATCCATGCTCGGTGCCGTCACCACCACCGCCAACCCTTTTTACACTGCCGCTGAAATTTTCAAGCAATTGAAAACCTCCGGAGCCAAACTCATCATCACTCAATCTCATTACGTCGATAAGCTCCGAGACCTTCCCGAGAACGGGAATGGCCTAAAACTCGGCGAGGATTTCACCGTTATTACCATCGATGAAGCACGACAGGATCACTGTCTTCATTTTTCGGAGATTTACGACGCGAAAGAGACCGACATTCGGATAGCGGACATCGACTCTAACGATGCCGTGGCATTGCCATTCTCTTCGGGGACTACTGGGCTTCCAAAGGGTGTGATTCTAACGCACAAGAGCTTGGTAACAAGCGTGGCTCAGCAAGTAGATGGAGAGAACCCTAACCTATATATGACAACAAACGACGTGGTCTTGTGTGTGCTTCCATTGTTTCATATATATTCGTTGAATAGTGTTCTTTTATGCTCGATTAGAGCTGGGGCTGCTGTTTTGCTCATGCAGAAGTTTGAGATAGAGGCCTTGTTGAGATTGATCCAGAGATACCGTGTATCGGTAGCGGCGGTGGTGCCGCCGTTGGTGCTGGCTTTGGCGAAGAACCCCATTGTGGCGGATTTTGATTTAAGCTCCATTAGAATGGTGCTGTCTGGGGCGGCGCCGCTGGGGAAGGAGCTGGAGGAGGCTCTCCGGCGCAGGATTCCTCAAGCTACTTTTGGTCAGGGTTATGGAATGACGGAGGCGGGACCTGTACTGAGCATGTGTTTGGGGTTTGCAAAGCAGCCGATAGCAACCAAGTCAGGTTCATGTGGGAGTGTAGTAAGAAACGCAGAGCTTAAGATCATCGACCCACAAACCGGTTCCTCCTTCTCCTATAATCAACCCGGAGAAATTTGCATTCGCGGCTCTCAAATCATGAAAGGATATTTGAACAACCCGGAGGCTACGTCGTTGACCATTGACGTGGAGGGTTGGCTTCACACCGGTGATATTGGTTACGTCGACGATGACGACGAGATTTTCATCGTTGATAGAGTCAAAGAGATCATCAAATTCAAAGGCTTTCAGGTGCCACCGGCGGAACTAGAGGCCCTTCTTGTCAGCCATCCGTCCATCGTCGATGCAGCTGTTGTCCCGCAAAAGGATGAAGCGGCCGGTGAAGTTCCAGTGGCGTTCGTGGTTAGATCAACGGGACTCGACCTCACTGAGGATGCCGTGAAAGAATTCGTCGCAAAGCAGGTGGTTTTCTATAAGAAATTGCACAAAGTTTATTTCGTGCATTCCATTCCAAAATCTCCCTCTGGAAAAATTTTGAGAAAAGATCTCAGAGCCAAGTTATCAGCATCTCCAGCCACCGTTTAA 1728 48.44 MISIAPSLDGQQSETSTKISSSQSRSNAADETTHVFRSKLPDIHIPNHLPLHTYCFQNLSEYSERPCLIVGSTGKTYSYSQTHLISKKTAAFFSKIGVKTGDVIMILLQNCAEFVFSFMGASMLGAVTTTANPFYTAAEIFKQLKTSGAKLIITQSHYVDKLRDLPENGNGLKLGEDFTVITIDEARQDHCLHFSEIYDAKETDIRIADIDSNDAVALPFSSGTTGLPKGVILTHKSLVTSVAQQVDGENPNLYMTTNDVVLCVLPLFHIYSLNSVLLCSIRAGAAVLLMQKFEIEALLRLIQRYRVSVAAVVPPLVLALAKNPIVADFDLSSIRMVLSGAAPLGKELEEALRRRIPQATFGQGYGMTEAGPVLSMCLGFAKQPIATKSGSCGSVVRNAELKIIDPQTGSSFSYNQPGEICIRGSQIMKGYLNNPEATSLTIDVEGWLHTGDIGYVDDDDEIFIVDRVKEIIKFKGFQVPPAELEALLVSHPSIVDAAVVPQKDEAAGEVPVAFVVRSTGLDLTEDAVKEFVAKQVVFYKKLHKVYFVHSIPKSPSGKILRKDLRAKLSASPATV 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45029420 45036842 - evm.model.ptg000010l.1154 HCH2g0350 539575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0350 575 Gene3D - 469 571 IPR045851 -
HCH2g0350 575 Pfam AMP-binding enzyme C-terminal domain 483 558 IPR025110 -
HCH2g0350 575 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 565 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
HCH2g0350 575 CDD 4CL 45 564 - -
HCH2g0350 575 ProSitePatterns Putative AMP-binding domain signature. 218 229 IPR020845 -
HCH2g0350 575 Gene3D - 26 468 IPR042099 -
HCH2g0350 575 Pfam AMP-binding enzyme 58 432 IPR000873 -
HCH2g0350 575 FunFam Long-chain-fatty-acid--CoA ligase FadD 37 469 - -
HCH2g0350 575 SUPERFAMILY Acetyl-CoA synthetase-like 36 569 - -
HCH2g0350 575 FunFam 4-coumarate--CoA ligase 2 470 571 - -
HCH2g0350 575 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1156 HCH-Chr1:58955150 HCH2g0350 HCH-Chr2:45029420 3.30E-112 dispersed
HCH2g0350 HCH-Chr2:45029420 HCH8g1024 HCH-Chr8:46243694 1.80E-193 dispersed
HCH2g0350 HCH-Chr2:45029420 HCH6g0312 HCH-Chr6:4851461 2.70E-197 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0350 K01904 - rcu:8280463 853.588