Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0395 ATGGCTCACAAGACTCCCAATCCCTTTTTCTCCTTCCTTCTTCCCTTCTTCATTGCATCTGTCTGCTCCCTTGATTACAACTATCAATCAAATGGATACAACCCGCTCAGTGACGACTTTTACGACATGTCGTGTCCTCACTTGAGCAAGATGGTCCAATACCGCGTGTGGGATGCCATTCAGAATGACACGAGAATTGCCGCGTCGCTGCTCCGGCTACACTTCCACGACTGTATAGTAAACGGCTGCGATGCATCAGTACTGCTTGATGATACCAAAGACTTTAAAGGAGAAAAGAGTGCGGGAGGAAACAAGAATTCGCTTCGAGGTTTTGAAGTGATAGATTACATAAAAGCGGATGCGGAGAGATATTGCCCTTATACTGTTTCGTGTGCTGATATTTTGGCTCTTGCTGCAAGAGAAGCTGTATATATGGTAGGAGGGCCATTCTGGAATGTCCCATTAGGACGTAGAGATGGATTGACAGCAAGTATGAAGGCAGCGAATGAGCAATTACCATCACCTATTGAGCCTCTTCAGAAAATCATTGCCAAGTTTACTTCTAAGGGTCTTGACTTGAAGGATGTTGTTGTGCTTTCAGGAGCACACACAATAGGGTTTGCCCGGTGCTTCACTTTCATAAGAAGACTGTTCAATTTCAAAGGGACAGGGCAGCCAGACCCAGACATGGGCAACTCAATGCTTTCTACCTTGCAAAGAATGTGTCCCAACAGAAACGACATCACATCAAACACAAACCTTGCTCCTCTCGATGTAGAAAGTGCTTACGGATTCGACAATTACTACTACACGAACCTTATGAGCCGCACCGGGCTTCTCGAATCCGATCAAGCTTTAATGGCGGATCCAGAAACTGCAGCACTGGTTAAATCCTATAGCTATGATCCTGATCTCTTTTTCAATGACTTTGCTGAGTCAATGGTGAGACTCAGTTATGTTGGAATTCTTACTGGACAAAATGGCCAGATTAGAAAGGAATGCGGTGCTGTTAATTATTACTATTAG 1026 44.54 MAHKTPNPFFSFLLPFFIASVCSLDYNYQSNGYNPLSDDFYDMSCPHLSKMVQYRVWDAIQNDTRIAASLLRLHFHDCIVNGCDASVLLDDTKDFKGEKSAGGNKNSLRGFEVIDYIKADAERYCPYTVSCADILALAAREAVYMVGGPFWNVPLGRRDGLTASMKAANEQLPSPIEPLQKIIAKFTSKGLDLKDVVVLSGAHTIGFARCFTFIRRLFNFKGTGQPDPDMGNSMLSTLQRMCPNRNDITSNTNLAPLDVESAYGFDNYYYTNLMSRTGLLESDQALMADPETAALVKSYSYDPDLFFNDFAESMVRLSYVGILTGQNGQIRKECGAVNYYY 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46876525 46879243 - evm.model.ptg000010l.1109 HCH2g0395 539620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0395 341 ProSitePatterns Peroxidases active site signature. 67 78 IPR019794 GO:0004601(InterPro)
HCH2g0395 341 ProSitePatterns Peroxidases proximal heme-ligand signature. 195 205 IPR019793 -
HCH2g0395 341 PRINTS Plant peroxidase signature 69 89 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Plant peroxidase signature 194 206 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Plant peroxidase signature 312 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Plant peroxidase signature 147 162 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Plant peroxidase signature 45 64 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Plant peroxidase signature 128 138 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Plant peroxidase signature 109 122 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Plant peroxidase signature 272 289 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Plant peroxidase signature 256 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PANTHER PEROXIDASE 72-RELATED 17 336 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 Pfam Peroxidase 52 300 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Haem peroxidase superfamily signature 147 159 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Haem peroxidase superfamily signature 67 81 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Haem peroxidase superfamily signature 129 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 PRINTS Haem peroxidase superfamily signature 258 273 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 CDD secretory_peroxidase 36 337 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH2g0395 341 FunFam Peroxidase 39 184 - -
HCH2g0395 341 FunFam Peroxidase 173 317 - -
HCH2g0395 341 ProSiteProfiles Plant heme peroxidase family profile. 35 338 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 SUPERFAMILY Heme-dependent peroxidases 36 338 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0395 341 Gene3D Peroxidase, domain 2 173 317 - -
HCH2g0395 341 Gene3D - 39 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0395 HCH-Chr2:46876525 HCH2g1421 HCH-Chr2:55919412 4.00E-76 dispersed
HCH7g0030 HCH-Chr7:217748 HCH2g0395 HCH-Chr2:46876525 1.20E-57 transposed
HCH14g0262 HCH-Chr14:30532058 HCH2g0395 HCH-Chr2:46876525 2.20E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0395 K00430 - mdm:114825215 435.261