Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0407 ATGAGTGATTTTTCAGGTTTCAAAAGGAAAATGCCGCGCCCTTATTTCCATAAGCTTATTCTCCCTTCCACTATCCAAGCTAGGCAATTGAGAATCCCTGAAAATTTCGTTAGGGTGATCAGGGATGAACTTTCTGGAGTTGCAACGCTTACTGTTCCTGATGGCCATGTTTGGCGCATAGGGTTGAGGAAAGCTGATAATAAATTTTGGTTCCAAGATGGATGGCATGGATTTGTTGAGCATTACTCTATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAATTCAGCATTCAGTGTTTTTATGTTTAATCTTAGTACTTCTGAAGTAAACTATCAATCAGCTGCTCTCAGTAGCAATCAAAGGAGTAATTACGGCGTTCAAAATCGAATCTTTGAAGAAATGGAGGATTATGACATTGCTGAAGCCTTTTCTTCCAATCAATCCTTGAATTCTGGCTCTTTACGTAATAAATTATTTGGTGATGAATGGAGTCTGCATCAATCAAAAAGTTCTGGTACTTTGCAAGCAGATTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTATGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATGTGGCTGATGTACCCAAAACTAAAAAAAGTGGAACCAAAAAGCGGAAAATTGATTCTAATGAGCACCACCCATCTGCTCACAGTGAAGAATTAGGAGACATGCGCTTTAGATTTTACGAAAGTGCTTCTGCTAGAAAGAGAACTGTAACAGCAGAAGAAAGAGAAAGAGCTATCAATTCTGCAAAAACTTTCGAGCCTGCTAATCCTTTCTGCAGGGTTGTTTTGCGACCGTCCTATCTATATAGGGGTTGTATAATGTATTTACCATCCTGCTTTGCTGAAAAGAATCTGAATGGGGTTTCGGGATTCATCAAACTTCAGATATCTGACGGGAGACAGTGGCCAGTCCGATGCCTCTATAAAGTTGGTAGGGCTAAGTTAAGTCAGGGATGGTATGAATTTTGCCTGGAAAACAATTTGGGGGAAGGTGATGTTTGTGTATTTGAGCTTCTGAGGATGAGGGAAATCGTTCTTAAAGTTACCATGTTTCGAGTCAATGAAGATGCTGGACTGATAACCTCACATCCTGGTAGCATGATGAATCCACCTGCACTGCGAAGTGTTGGCCAAATAAAGCTGATCAGAAATTAA 1212 39.85 MSDFSGFKRKMPRPYFHKLILPSTIQARQLRIPENFVRVIRDELSGVATLTVPDGHVWRIGLRKADNKFWFQDGWHGFVEHYSIRVGYLLVFRYEGNSAFSVFMFNLSTSEVNYQSAALSSNQRSNYGVQNRIFEEMEDYDIAEAFSSNQSLNSGSLRNKLFGDEWSLHQSKSSGTLQADYLSTRDIGVQFSAMEVKKSADEVRFQNVADVPKTKKSGTKKRKIDSNEHHPSAHSEELGDMRFRFYESASARKRTVTAEERERAINSAKTFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQISDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVNEDAGLITSHPGSMMNPPALRSVGQIKLIRN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47130874 47134154 + evm.model.ptg000010l.1097 HCH2g0407 539632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0407 403 CDD B3_DNA 276 371 IPR003340 GO:0003677(InterPro)
HCH2g0407 403 SUPERFAMILY DNA-binding pseudobarrel domain 12 107 IPR015300 -
HCH2g0407 403 Gene3D - 255 375 IPR015300 -
HCH2g0407 403 PANTHER B3 DOMAIN-CONTAINING 13 358 IPR050655 -
HCH2g0407 403 MobiDBLite consensus disorder prediction 212 234 - -
HCH2g0407 403 SMART B3_2 16 108 IPR003340 GO:0003677(InterPro)
HCH2g0407 403 SMART B3_2 278 373 IPR003340 GO:0003677(InterPro)
HCH2g0407 403 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677(InterPro)
HCH2g0407 403 Gene3D - 8 109 IPR015300 -
HCH2g0407 403 ProSiteProfiles B3 DNA-binding domain profile. 278 373 IPR003340 GO:0003677(InterPro)
HCH2g0407 403 Pfam B3 DNA binding domain 18 101 IPR003340 GO:0003677(InterPro)
HCH2g0407 403 Pfam B3 DNA binding domain 280 372 IPR003340 GO:0003677(InterPro)
HCH2g0407 403 SUPERFAMILY DNA-binding pseudobarrel domain 271 373 IPR015300 -
HCH2g0407 403 CDD B3_DNA 14 106 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0407 HCH-Chr2:47130874 HCH2g0408 HCH-Chr2:47137792 6.70E-62 tandem
HCH11g1015 HCH-Chr11:41738115 HCH2g0407 HCH-Chr2:47130874 4.40E-35 transposed
HCH14g0242 HCH-Chr14:29836408 HCH2g0407 HCH-Chr2:47130874 4.60E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33151 PF02362 B3 4.90E-17 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0407 - - - 0.0