Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0407 | ATGAGTGATTTTTCAGGTTTCAAAAGGAAAATGCCGCGCCCTTATTTCCATAAGCTTATTCTCCCTTCCACTATCCAAGCTAGGCAATTGAGAATCCCTGAAAATTTCGTTAGGGTGATCAGGGATGAACTTTCTGGAGTTGCAACGCTTACTGTTCCTGATGGCCATGTTTGGCGCATAGGGTTGAGGAAAGCTGATAATAAATTTTGGTTCCAAGATGGATGGCATGGATTTGTTGAGCATTACTCTATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAATTCAGCATTCAGTGTTTTTATGTTTAATCTTAGTACTTCTGAAGTAAACTATCAATCAGCTGCTCTCAGTAGCAATCAAAGGAGTAATTACGGCGTTCAAAATCGAATCTTTGAAGAAATGGAGGATTATGACATTGCTGAAGCCTTTTCTTCCAATCAATCCTTGAATTCTGGCTCTTTACGTAATAAATTATTTGGTGATGAATGGAGTCTGCATCAATCAAAAAGTTCTGGTACTTTGCAAGCAGATTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTATGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATGTGGCTGATGTACCCAAAACTAAAAAAAGTGGAACCAAAAAGCGGAAAATTGATTCTAATGAGCACCACCCATCTGCTCACAGTGAAGAATTAGGAGACATGCGCTTTAGATTTTACGAAAGTGCTTCTGCTAGAAAGAGAACTGTAACAGCAGAAGAAAGAGAAAGAGCTATCAATTCTGCAAAAACTTTCGAGCCTGCTAATCCTTTCTGCAGGGTTGTTTTGCGACCGTCCTATCTATATAGGGGTTGTATAATGTATTTACCATCCTGCTTTGCTGAAAAGAATCTGAATGGGGTTTCGGGATTCATCAAACTTCAGATATCTGACGGGAGACAGTGGCCAGTCCGATGCCTCTATAAAGTTGGTAGGGCTAAGTTAAGTCAGGGATGGTATGAATTTTGCCTGGAAAACAATTTGGGGGAAGGTGATGTTTGTGTATTTGAGCTTCTGAGGATGAGGGAAATCGTTCTTAAAGTTACCATGTTTCGAGTCAATGAAGATGCTGGACTGATAACCTCACATCCTGGTAGCATGATGAATCCACCTGCACTGCGAAGTGTTGGCCAAATAAAGCTGATCAGAAATTAA | 1212 | 39.85 | MSDFSGFKRKMPRPYFHKLILPSTIQARQLRIPENFVRVIRDELSGVATLTVPDGHVWRIGLRKADNKFWFQDGWHGFVEHYSIRVGYLLVFRYEGNSAFSVFMFNLSTSEVNYQSAALSSNQRSNYGVQNRIFEEMEDYDIAEAFSSNQSLNSGSLRNKLFGDEWSLHQSKSSGTLQADYLSTRDIGVQFSAMEVKKSADEVRFQNVADVPKTKKSGTKKRKIDSNEHHPSAHSEELGDMRFRFYESASARKRTVTAEERERAINSAKTFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQISDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVNEDAGLITSHPGSMMNPPALRSVGQIKLIRN | 403 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 47130874 | 47134154 | + | evm.model.ptg000010l.1097 | HCH2g0407 | 539632 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0407 | 403 | CDD | B3_DNA | 276 | 371 | IPR003340 | GO:0003677(InterPro) | |
HCH2g0407 | 403 | SUPERFAMILY | DNA-binding pseudobarrel domain | 12 | 107 | IPR015300 | - | |
HCH2g0407 | 403 | Gene3D | - | 255 | 375 | IPR015300 | - | |
HCH2g0407 | 403 | PANTHER | B3 DOMAIN-CONTAINING | 13 | 358 | IPR050655 | - | |
HCH2g0407 | 403 | MobiDBLite | consensus disorder prediction | 212 | 234 | - | - | |
HCH2g0407 | 403 | SMART | B3_2 | 16 | 108 | IPR003340 | GO:0003677(InterPro) | |
HCH2g0407 | 403 | SMART | B3_2 | 278 | 373 | IPR003340 | GO:0003677(InterPro) | |
HCH2g0407 | 403 | ProSiteProfiles | B3 DNA-binding domain profile. | 15 | 108 | IPR003340 | GO:0003677(InterPro) | |
HCH2g0407 | 403 | Gene3D | - | 8 | 109 | IPR015300 | - | |
HCH2g0407 | 403 | ProSiteProfiles | B3 DNA-binding domain profile. | 278 | 373 | IPR003340 | GO:0003677(InterPro) | |
HCH2g0407 | 403 | Pfam | B3 DNA binding domain | 18 | 101 | IPR003340 | GO:0003677(InterPro) | |
HCH2g0407 | 403 | Pfam | B3 DNA binding domain | 280 | 372 | IPR003340 | GO:0003677(InterPro) | |
HCH2g0407 | 403 | SUPERFAMILY | DNA-binding pseudobarrel domain | 271 | 373 | IPR015300 | - | |
HCH2g0407 | 403 | CDD | B3_DNA | 14 | 106 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0407 | HCH-Chr2:47130874 | HCH2g0408 | HCH-Chr2:47137792 | 6.70E-62 | tandem | |
HCH11g1015 | HCH-Chr11:41738115 | HCH2g0407 | HCH-Chr2:47130874 | 4.40E-35 | transposed | |
HCH14g0242 | HCH-Chr14:29836408 | HCH2g0407 | HCH-Chr2:47130874 | 4.60E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33151 | PF02362 | B3 | 4.90E-17 | CL0405 | HCH | TF |
Pathway information
