Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0414 ATGGAGGATTGCATCAGTGGCGATGAAGACTATTATGACTCCGATCGAGAGTCTCTTCATGGTCTCGAGAATGAGGATTCCGATATTCAGTGGGTCCCTAAGGGTTCTGCGACCAAGGTAATTACGAGAGAATCTCTTCTTGCTGCACAGAAGGAGGACATGCGTAGAGTAATGGACTTGCTATCATTGAGGGAATATCATGCTCGAACTCTACTCATTCATTATAGATGGGATGTAGAAAAGTTGTTTGCCGTTCTTGTGGAGAAGGGGAAAAGTCACTTGTTTGCTACTGCAGGTGTTACTGTTATTGAGCATCAAAATAATGATCCCTCCGAGTCGTCTTCCATAGTGATGTGTGATATCTGCATGGAGGAAGTACATAGTAATGAAGCAACAGGAATGGATTGTGGACATTACTTTTGCAATAACTGTTGGACTGAACATTTTATTGTGAAAATAAATGAAGGTCAAAGTCGGCGTATTAGGTGCATGGCACACAAATGCAATGCTATTTGTGATGAAGCTGTTGTCAGGAATCTAGTTAGGAAAAGGCATCCAGACCTTGCTGAAAAATTCGATCGTTTCCTTCTTGAATCATACATCGAGGATAATAAAAGAGTAAAGTGGTGTCCAAGTACCCCTCATTGTGGCAATGCTATACGCGTGGAGGATGATGAATTTTGTGAGGTGGAATGTTCATGTGGTCTTCAATTTTGTTTCAGCTGCTTATCAGAAGCTCACTCGCCATGTTCATGTTTGATGTGGGAGCTGTGGATCAAGAAGTGCCGGGATGAATCTGAAACTGTCAATTGGATTACTGTTCATACTAAACCCTGTCCAAAGTGTCACAAACCTGTTGAGAAGAATGGTGGCTGTAACCTTGTTAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTATGTGGTGGAGCCACTGGTCGAGAACATACTTGGTCAACTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAAACAGCACAAAAAGCTGAACGGGCAAAGCGGGATTTGTATCGTTATATGCATTATCATAACCGGTATAAAGCTCATACTGATTCTTTCACACTCGAAAGCAAATTGAAGGAAACTATACAAGAGAAGGTTTCAGCTTCTGAAGAGAGAGAATCCATGCTTCGAGATTTTAGTTGGGTAAACAATGGACTTTATAGACTTTTCAGATCAAGGCGGGTTCTTTCATATTCATACCCATTTGCATTTTATATGTTCGGGGATGAGCTTTTCAAAGATGAGATGACAGAGAAGGAAAGAGAGATAAAGCAGCATCTGTTTGAGGACCAGCAACAACAGCTTGAGGCTAATGTTGAGAAGCTGTCCAAGTCCCTAGAGGAGCCTTTTGATCAATACACAAAAGATAAAGTAATGGAGATAAGGATGCAAGTCATCAATCTATCGGTTATCACTGATACCCTCTGTAAGAAGATGTATGATTGTATTGAGAATGATCTTTTAGGTTCTCTTGAACTGGGTATTCACAATATTGCTCCTTACAAATCGAAAGGTATCGAGAGGGCACTGGAACTTTCTGCTTCTTGGAACAGCAGAGCAAATAATACAGATAAATATCTGCCATCAGAATGTGGTACAAGTGGAGGATTGTCGGAACGTGATCCACGACCACCACCACCACCACCGAGTGGCTTGAATTCAGATGAGAATGGATGCTCTTCCAGAAAGCGTGCCAGAGCAGAAGGTGTTAGTAGCAATTTTTTTGATCTAAACTTGCCTGCAGAGGTGGTTGATAGAAACTGA 1788 41.72 MEDCISGDEDYYDSDRESLHGLENEDSDIQWVPKGSATKVITRESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTVIEHQNNDPSESSSIVMCDICMEEVHSNEATGMDCGHYFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVRKRHPDLAEKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSTISGHSCGRYKEETAQKAERAKRDLYRYMHYHNRYKAHTDSFTLESKLKETIQEKVSASEERESMLRDFSWVNNGLYRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEKEREIKQHLFEDQQQQLEANVEKLSKSLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIERALELSASWNSRANNTDKYLPSECGTSGGLSERDPRPPPPPPSGLNSDENGCSSRKRARAEGVSSNFFDLNLPAEVVDRN 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47284062 47289263 - evm.model.ptg000010l.1090 HCH2g0414 539639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0414 595 MobiDBLite consensus disorder prediction 531 575 - -
HCH2g0414 595 CDD RING-HC_RBR_TRIAD1 117 170 - -
HCH2g0414 595 FunFam RBR-type E3 ubiquitin transferase 248 496 - -
HCH2g0414 595 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
HCH2g0414 595 Pfam IBR domain 272 314 IPR054694 -
HCH2g0414 595 Pfam Ariadne domain 329 595 IPR045840 -
HCH2g0414 595 SMART ibrneu5 260 325 IPR002867 GO:0008270(InterPro)
HCH2g0414 595 SMART ibrneu5 190 252 IPR002867 GO:0008270(InterPro)
HCH2g0414 595 CDD BRcat_RBR_ANKIB1 197 261 - -
HCH2g0414 595 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
HCH2g0414 595 SUPERFAMILY RING/U-box 114 202 - -
HCH2g0414 595 Gene3D - 248 496 - -
HCH2g0414 595 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270(InterPro)
HCH2g0414 595 CDD Rcat_RBR_ARI1-like 273 326 - -
HCH2g0414 595 FunFam RBR-type E3 ubiquitin transferase 113 204 - -
HCH2g0414 595 SUPERFAMILY RING/U-box 190 259 - -
HCH2g0414 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 204 IPR013083 -
HCH2g0414 595 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 49 83 IPR048962 -
HCH2g0414 595 SUPERFAMILY RING/U-box 260 327 - -
HCH2g0414 595 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 76 361 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0414 HCH-Chr2:47284062 HCH4g0690 HCH-Chr4:4484080 9.20E-52 dispersed
HCH2g0414 HCH-Chr2:47284062 HCH4g0689 HCH-Chr4:4477074 1.50E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0414 K11968 - csv:101205066 1122.84