Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0414 ATGGAGGATTGCATCAGTGGCGATGAAGACTATTATGACTCCGATCGAGAGTCTCTTCATGGTCTCGAGAATGAGGATTCCGATATTCAGTGGGTCCCTAAGGGTTCTGCGACCAAGGTAATTACGAGAGAATCTCTTCTTGCTGCACAGAAGGAGGACATGCGTAGAGTAATGGACTTGCTATCATTGAGGGAATATCATGCTCGAACTCTACTCATTCATTATAGATGGGATGTAGAAAAGTTGTTTGCCGTTCTTGTGGAGAAGGGGAAAAGTCACTTGTTTGCTACTGCAGGTGTTACTGTTATTGAGCATCAAAATAATGATCCCTCCGAGTCGTCTTCCATAGTGATGTGTGATATCTGCATGGAGGAAGTACATAGTAATGAAGCAACAGGAATGGATTGTGGACATTACTTTTGCAATAACTGTTGGACTGAACATTTTATTGTGAAAATAAATGAAGGTCAAAGTCGGCGTATTAGGTGCATGGCACACAAATGCAATGCTATTTGTGATGAAGCTGTTGTCAGGAATCTAGTTAGGAAAAGGCATCCAGACCTTGCTGAAAAATTCGATCGTTTCCTTCTTGAATCATACATCGAGGATAATAAAAGAGTAAAGTGGTGTCCAAGTACCCCTCATTGTGGCAATGCTATACGCGTGGAGGATGATGAATTTTGTGAGGTGGAATGTTCATGTGGTCTTCAATTTTGTTTCAGCTGCTTATCAGAAGCTCACTCGCCATGTTCATGTTTGATGTGGGAGCTGTGGATCAAGAAGTGCCGGGATGAATCTGAAACTGTCAATTGGATTACTGTTCATACTAAACCCTGTCCAAAGTGTCACAAACCTGTTGAGAAGAATGGTGGCTGTAACCTTGTTAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTATGTGGTGGAGCCACTGGTCGAGAACATACTTGGTCAACTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAAACAGCACAAAAAGCTGAACGGGCAAAGCGGGATTTGTATCGTTATATGCATTATCATAACCGGTATAAAGCTCATACTGATTCTTTCACACTCGAAAGCAAATTGAAGGAAACTATACAAGAGAAGGTTTCAGCTTCTGAAGAGAGAGAATCCATGCTTCGAGATTTTAGTTGGGTAAACAATGGACTTTATAGACTTTTCAGATCAAGGCGGGTTCTTTCATATTCATACCCATTTGCATTTTATATGTTCGGGGATGAGCTTTTCAAAGATGAGATGACAGAGAAGGAAAGAGAGATAAAGCAGCATCTGTTTGAGGACCAGCAACAACAGCTTGAGGCTAATGTTGAGAAGCTGTCCAAGTCCCTAGAGGAGCCTTTTGATCAATACACAAAAGATAAAGTAATGGAGATAAGGATGCAAGTCATCAATCTATCGGTTATCACTGATACCCTCTGTAAGAAGATGTATGATTGTATTGAGAATGATCTTTTAGGTTCTCTTGAACTGGGTATTCACAATATTGCTCCTTACAAATCGAAAGGTATCGAGAGGGCACTGGAACTTTCTGCTTCTTGGAACAGCAGAGCAAATAATACAGATAAATATCTGCCATCAGAATGTGGTACAAGTGGAGGATTGTCGGAACGTGATCCACGACCACCACCACCACCACCGAGTGGCTTGAATTCAGATGAGAATGGATGCTCTTCCAGAAAGCGTGCCAGAGCAGAAGGTGTTAGTAGCAATTTTTTTGATCTAAACTTGCCTGCAGAGGTGGTTGATAGAAACTGA 1788 41.72 MEDCISGDEDYYDSDRESLHGLENEDSDIQWVPKGSATKVITRESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTVIEHQNNDPSESSSIVMCDICMEEVHSNEATGMDCGHYFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVRKRHPDLAEKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSTISGHSCGRYKEETAQKAERAKRDLYRYMHYHNRYKAHTDSFTLESKLKETIQEKVSASEERESMLRDFSWVNNGLYRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEKEREIKQHLFEDQQQQLEANVEKLSKSLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIERALELSASWNSRANNTDKYLPSECGTSGGLSERDPRPPPPPPSGLNSDENGCSSRKRARAEGVSSNFFDLNLPAEVVDRN 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47284062 47289263 - evm.model.ptg000010l.1090 HCH2g0414 539639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0414 595 MobiDBLite consensus disorder prediction 531 575 - -
HCH2g0414 595 CDD RING-HC_RBR_TRIAD1 117 170 - -
HCH2g0414 595 FunFam RBR-type E3 ubiquitin transferase 248 496 - -
HCH2g0414 595 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
HCH2g0414 595 Pfam IBR domain 272 314 IPR054694 -
HCH2g0414 595 Pfam Ariadne domain 329 595 IPR045840 -
HCH2g0414 595 SMART ibrneu5 260 325 IPR002867 GO:0008270(InterPro)
HCH2g0414 595 SMART ibrneu5 190 252 IPR002867 GO:0008270(InterPro)
HCH2g0414 595 CDD BRcat_RBR_ANKIB1 197 261 - -
HCH2g0414 595 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
HCH2g0414 595 SUPERFAMILY RING/U-box 114 202 - -
HCH2g0414 595 Gene3D - 248 496 - -
HCH2g0414 595 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270(InterPro)
HCH2g0414 595 CDD Rcat_RBR_ARI1-like 273 326 - -
HCH2g0414 595 FunFam RBR-type E3 ubiquitin transferase 113 204 - -
HCH2g0414 595 SUPERFAMILY RING/U-box 190 259 - -
HCH2g0414 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 204 IPR013083 -
HCH2g0414 595 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 49 83 IPR048962 -
HCH2g0414 595 SUPERFAMILY RING/U-box 260 327 - -
HCH2g0414 595 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 76 361 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0414 K11968 - - csv:101205066 1122.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0414 HCH-Chr2:47284062 HCH4g0690 HCH-Chr4:4484080 9.20E-52 dispersed
HCH2g0414 HCH-Chr2:47284062 HCH4g0689 HCH-Chr4:4477074 1.50E-49 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0414 . 164 595 ARIADNE family AT4G34370 71.1 2.6e-181 631.7
HCH2g0414 . 58 542 ARIADNE family AT2G16090 76.4 6.5e-221 763.5
HCH2g0414 . 36 543 ARIADNE family AT3G27710 61.7 2.7e-183 638.6
HCH2g0414 . 44 523 ARIADNE family AT3G27720 53.3 8.0e-142 500.7
HCH10g0595 . 14 541 ARIADNE family AT1G05890 65.1 8.5e-223 770.0
HCH10g0037 . 64 543 ARIADNE family AT1G05890 72.5 9.1e-217 750.0
HCH4g0690 . 39 497 ARIADNE family AT1G05890 51.2 8.2e-141 497.7
HCH4g0689 . 39 499 ARIADNE family AT1G05890 51.7 1.4e-140 496.9
HCH10g0595 . 20 596 ARIADNE family AT1G65430 73.5 4.3e-264 907.1
HCH10g0037 . 16 593 ARIADNE family AT1G65430 69.4 7.6e-245 843.2
HCH10g0595 . 50 460 ARIADNE family AT2G31780 56.9 8.8e-148 520.4
HCH10g0037 . 51 457 ARIADNE family AT2G31780 56.7 1.5e-144 509.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46