Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0440 ATGTCTTCTCCGTCAGATTCTCCGCCTTCAGATTCATCATCACCACCACCGTCATCTCCCCCTCCGACTGATTCATCTCCACCTCCTTCGTCACCGCCACCACCAGACTCCGAACCTCCACCTCCGCCGGCCTCCACTCCTCCTCCTTCTCCTCCTCCAGGATCCCCACCACCGTCATCACCACCACCGAAAGACTCGAGGTCGCCACCTCCTCCGTCCCCAAAGTCAAATTCATCTCCTCCATCTCCCAATTCAAGTTCTTCATCTCCTCCTCCACCACCGCCTCCACCCCCTCCGCCGCCTCCGCCTCCTCCACCTCCTCCAACACCCGGATCCTCTAGGCATGTTCCACCTCCGCCTCCAAAATCTATCTCGCCGACGCATCATTCACGATCGCCGGGCTCTCCATCCAATGACTCTTCGCCTCAAGCACTGCCCGTGATTATAGGCGTGGCGGTGGCGACAGGCTTTTTGCTATTCGCTATGGCTTTGTTCTTCTTTGCATGCAGCAAAAAGAAAAAGAAAGGGAATAATAATAATCAAATGTACTTCGAGGATCAGCCTCATGGTCCTAAAGGTGGGGATCCATATTACAACGGACGTCACAACTGGAATAACACAAGCGAACACTACGTTAACATGGCGCCACTTGGAGGTGGAAACCAAGGGGTTTGGCCATCACCTCCGCCACCGCCGCCGCCGGCAGCATTAGTTAGCAGTGATATGAGTTCCAATTTCTCCGGTTCACATGGACCGGCATTGCCACCTCCACACCCATCAGTAGCTCTAGGATTCAACAAAAGCACATTCACTTATGAAGAGCTGATGGCGGCGACCGGAGGGTTTGCTCCAGCGAACTTGCTGGGTCAAGGTGGATTTGGTTATGTGCACAAAGGAATTTTACCAAATGGGAAGGAAATTGCTGTGAAAAGCCTCAAATCAGGAAGTGGGCAAGGAGATCGAGAATTCGCGGCTGAAGTGGAGATTATTAGCCGTGTTCACCACCGCCACCTTGTGTCTCTTGTTGGATATTGCATCGCCGGTGACCGGAAAATGTTGGTTTATGAATTTGTTGCTAATAACAACCTCGAATTCCACCTTCACGGAAACGGGGGCCAAATAATGGAGTGGTCAACCAGGATCAAGATTGCCCTGGGTTCGGCCAAGGGGCTGGCCTATCTCCATGAAGACTGTCATCCTCGCATCATCCACAGGGACATCAAAGCTGCAAATATTCTTATAGACATGAGTTTCGAAGCCAAGGTGGCTGACTTTGGATTGGCCAAGCTCAACCAGGAAAATGTCACTCACGTATCCACTCGTGTCATGGGCACATTTGGATATTTGGCACCTGAGTATGCATCAAGCGGGAAGCTGACAGAGAAATCTGATGTCTTCTCTTATGGCATTATGCTTTTGGAACTGATAACTGGAAGACGTCCCTTCGATCCTACCGGTGAAATGGAGGACAGTCTAGTGGACTGGTCTAGACCTCTTTGTTTGAAAGCCATGAGCGACGGCAACTACGACGAGTTAGTCGATCCACGGCTAGAGAATAACTACGATCCCCATGAAATGGCTCGCATGGTTGCTTGCGCCGCCGCTTCCATTCGGCATTCCGCCAGAAGACGCCCCAAAATGAGCCAGATCGTGCGGGCATTGGAAGGAGACGTCTCGCTAGAAGATTTGCACGACGGAGTGAAGCCAGGGCAGAGTTCATTCTTCGGATCAGGAACGTCGTCGGAGTATGACGCAAACTCATATAGCGCCGACATGAAGAAGTTCAGAAAAGTGGCGTTAGACAGTCGTGAATACACGAGCAGCGAATACGGCGCCACGAGCGAATACGGCCTAAACCCTTCCACGACAAGCAGCGAATCACGTGAAATGAGCAGGAAAACGAGCCGTCTCGCATCTCCTTTATCATCGTATCAAAACCCTAATTAA 1947 51.57 MSSPSDSPPSDSSSPPPSSPPPTDSSPPPSSPPPPDSEPPPPPASTPPPSPPPGSPPPSSPPPKDSRSPPPPSPKSNSSPPSPNSSSSSPPPPPPPPPPPPPPPPPPPTPGSSRHVPPPPPKSISPTHHSRSPGSPSNDSSPQALPVIIGVAVATGFLLFAMALFFFACSKKKKKGNNNNQMYFEDQPHGPKGGDPYYNGRHNWNNTSEHYVNMAPLGGGNQGVWPSPPPPPPPAALVSSDMSSNFSGSHGPALPPPHPSVALGFNKSTFTYEELMAATGGFAPANLLGQGGFGYVHKGILPNGKEIAVKSLKSGSGQGDREFAAEVEIISRVHHRHLVSLVGYCIAGDRKMLVYEFVANNNLEFHLHGNGGQIMEWSTRIKIALGSAKGLAYLHEDCHPRIIHRDIKAANILIDMSFEAKVADFGLAKLNQENVTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGIMLLELITGRRPFDPTGEMEDSLVDWSRPLCLKAMSDGNYDELVDPRLENNYDPHEMARMVACAAASIRHSARRRPKMSQIVRALEGDVSLEDLHDGVKPGQSSFFGSGTSSEYDANSYSADMKKFRKVALDSREYTSSEYGATSEYGLNPSTTSSESREMSRKTSRLASPLSSYQNPN 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47723369 47727518 + evm.model.ptg000010l.1064 HCH2g0440 539665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0440 648 Gene3D Phosphorylase Kinase; domain 1 259 357 - -
HCH2g0440 648 ProSiteProfiles Protein kinase domain profile. 282 567 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0440 648 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 108 598 IPR047117 -
HCH2g0440 648 Gene3D Transferase(Phosphotransferase) domain 1 358 565 - -
HCH2g0440 648 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524(InterPro)
HCH2g0440 648 MobiDBLite consensus disorder prediction 127 142 - -
HCH2g0440 648 FunFam Proline-rich receptor-like protein kinase PERK1 358 565 - -
HCH2g0440 648 MobiDBLite consensus disorder prediction 9 126 - -
HCH2g0440 648 CDD STKc_IRAK 288 556 - -
HCH2g0440 648 MobiDBLite consensus disorder prediction 1 142 - -
HCH2g0440 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0440 648 FunFam proline-rich receptor-like protein kinase PERK1 260 357 - -
HCH2g0440 648 SUPERFAMILY Protein kinase-like (PK-like) 260 554 IPR011009 -
HCH2g0440 648 MobiDBLite consensus disorder prediction 223 237 - -
HCH2g0440 648 Pfam Protein tyrosine and serine/threonine kinase 287 554 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0440 648 MobiDBLite consensus disorder prediction 606 648 - -
HCH2g0440 648 SMART serkin_6 282 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0440 648 MobiDBLite consensus disorder prediction 220 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0440 HCH-Chr2:47723369 HCH8g0750 HCH-Chr8:44129632 4.80E-155 dispersed
HCH2g0440 HCH-Chr2:47723369 HCH10g0465 HCH-Chr10:3807132 3.00E-157 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81317 PF07714 PK_Tyr_Ser-Thr 1.40E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0440 - - - 0.0