Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0451 ATGAACAGAGCCTCGTCGGAGATGTTGCATTCCTCGGCGACGGACGTGACTGTGCTGGAAAGACTCAGAGCTCGTATGAAATGGCGGAGGCAACGGCACGGTGGCTACGACGGGAGTTTATCTTCTGTGTTGATGATGCAGGAGAATCGGGTGGAAGGTTTTGAGGATCTGATGGCTAGTGGATGGCCGGAATTGGGTAAGTATCATGAGATGGCCGGCGTGGGGTTTCAGTCTTCTGGGTTGGTCATGTCGAGAAGTTTGCCGGCGGCGGTGAAAAGCAGAGACACAATGGCGTCGGTTCATATGAGCTCTTTCAAGAAGAGAAAAGCTAATAAGGAGGAGAAAACAAAGGTAGTTGCTGAAAAAGCTGAAAGCAAAGAGAAGAGAGTAAAATTAAGGGAAGAAGAAGAGGAAGAATCAAAGATTATTACAGAGCAAAACAGCACCAAAAGCAAAGAAACTTTTACAGATACATCAAAATTAGCTTCTTCCGAAGTTCAAAAAACAGATTACATTCACGTTCGAGCACGTCGAGGCCAAGCCACCGACAGCCATAGTCTTGCAGAAAGAGCGAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAAAGTTTAGTACCAGGGTGTAACAAAATCGTAGGAAAAGCTGGAATGCTTGACGAAATCATAAATTATGTTCAATCTCTTCAACAACAAGTAGAGTTCTTGTCCATGAAACTGGCTGCTGTTAATCCAAGACTCGACGAACTCTTTCTTAAACAGGAAAATCAACAGGGATTTCCTGCCATTGGAGTGTCATCAGAAATGACTAATTCTTCGTTCGTGGATCAACTCACCATGGATGAATCTATGGTTTCTTGCTGCTTATCATCAGTCCCAGAAACTTTGACGATTGATTCGGCTTCTTTCACTGAGGAATTCCAGCCCTATTCAACATGGGAGGTAGATTTACAAAGCATTTATAATGTGAACTTTGAGGAAGGACCATTTTCAAACTTTCAATAA 1008 43.25 MNRASSEMLHSSATDVTVLERLRARMKWRRQRHGGYDGSLSSVLMMQENRVEGFEDLMASGWPELGKYHEMAGVGFQSSGLVMSRSLPAAVKSRDTMASVHMSSFKKRKANKEEKTKVVAEKAESKEKRVKLREEEEEESKIITEQNSTKSKETFTDTSKLASSEVQKTDYIHVRARRGQATDSHSLAERARREKISERMKYLQSLVPGCNKIVGKAGMLDEIINYVQSLQQQVEFLSMKLAAVNPRLDELFLKQENQQGFPAIGVSSEMTNSSFVDQLTMDESMVSCCLSSVPETLTIDSASFTEEFQPYSTWEVDLQSIYNVNFEEGPFSNFQ 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47976348 47978403 + evm.model.ptg000010l.1053 HCH2g0451 539676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0451 335 FunFam Basic helix-loop-helix transcription factor 177 249 - -
HCH2g0451 335 Pfam Helix-loop-helix DNA-binding domain 184 231 IPR011598 GO:0046983(InterPro)
HCH2g0451 335 CDD bHLH_AtBPE_like 170 249 - -
HCH2g0451 335 MobiDBLite consensus disorder prediction 101 120 - -
HCH2g0451 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 251 IPR036638 GO:0046983(InterPro)
HCH2g0451 335 SMART finulus 186 236 IPR011598 GO:0046983(InterPro)
HCH2g0451 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 230 IPR011598 GO:0046983(InterPro)
HCH2g0451 335 MobiDBLite consensus disorder prediction 130 160 - -
HCH2g0451 335 MobiDBLite consensus disorder prediction 106 120 - -
HCH2g0451 335 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 103 273 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH2g0451 335 Gene3D - 177 255 IPR036638 GO:0046983(InterPro)
HCH2g0451 335 MobiDBLite consensus disorder prediction 130 146 - -
HCH2g0451 335 Coils Coil 118 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0451 HCH-Chr2:47976348 HCH5g1042 HCH-Chr5:12081685 4.10E-33 dispersed
HCH2g0451 HCH-Chr2:47976348 HCH7g0547 HCH-Chr7:4253811 5.90E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33157 PF00010 HLH 7.90E-07 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0451 - - - 0.0