Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0479 | ATGGCTGCTTACTACTCTAATTCTAATAATGAAAGGGATACTACTCCCATCCTTTACTCAAGTTCAAGGGAAGCTTTGCTCAGTTCGTATGAAGAAGCATCGGTTCTTCCCCGAAATCTGATGATGCATGTACATTCTGGGACTTACATGGATTCATTGCCATCACAGACGCAAAATGGTTGTGATCAGATGACATCAGTTGGAGCTTCAGGAACTGCCCAACAGCAGCAAGAATTTTTATCAAATCTTGGTGGTTCACAAATTTCTGAGCATGATTTCAACTCATGGAGAGAGGATAGAAGTGAACTTTTGGGTTCAAACTCAATGCGCGGCCCTGCCATTATTCTCCCTAGTAGGCAGAATTTGCAGGGTCAGGGATTATCTCTTACTCTTAGTACACATATTCCATCTGGAATCCAAATGGCTTCACTCCCATATCGGAATCCTGATATGGGTTTAACTTCATTCTTGAGTCCTAATCCAAGTAATTCAGGTGAGGGTGGCGGCAGAAATGGTGCTTCTAGAGATGAACAGCTGAGAAATGGAGAAAACTTTTCACCTGGTTTTCAAGAATTGGCTAAAGGTGAATTATCTCAGTACGGCATGTCTAGTACTGCAAGAACCATGCCCAACTCGAAGTACCTCAAGGCAGCACAACAATTGCTTGATGAAGTTGTCAATGTCAGGAAAGCTTTGAAACGACCAAATAATGAGAGAAACCAGAGCCCACGTGAGCATGAAACGAAGAGCGGAAAGGATGGTGATGCAGGAACCAAAACTGATAGTTCCATGCTCACTGCTAGTGGAGTATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTTTCACATGCTGAAAGGCAAGATTTGCAGAACAAGTTGACAAAACTTTTATACATGTTGGATGAGGTTGATAGGAGGTACAATCAGTATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCAGGATGTGGCGCATCTAAGCCATATACTGCACTTGCACTTCAGACTATATCCCGTCATTTTCGTTGCTTGCGTGATGCAATAGCGGGTCAAGTCAAAGCTACTCGTAGAAGCCTGGGAGAGCATGAAAATTCTGGAAGTGATAAAGGAGTTGGAATTAGTCGTCTTCGATATGTGGACCAGCAGTTAAGACAACAAAGGGCTCTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAACGAGGGTTGCCTGAGAACTCCGTTTCAATTCTCCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCGTATCCAAAGGATTCTGATAAGATTATGCTGGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCTAATTGGTTCATCAATGCACGTGTGCGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAGACGGGCAATGCGGACTTGGACTCCATATCATCATCTGAAAATGCCGCCAAGGCAACAAAAGGAGATATTCGGACATGTGAAGATGAAAGAGAGGAGGATCTGCAACAAAGTGCAAGTTCAACAGCCACAGAAAGATGTAGTGCCGGAGATATTATGGACTTAAAATCTGATCAGGTCTCCAGTCTTGGAATTGCAGGTTCCACGAGACTAACCAGTTTCCAGAACGGCCCTATAGAATCCCAAAATGAGTTGGTGAAGCCGAGGGAAGAGCAAAGGCCTAATGTAAGTAACTCCAATTTCTTTCCTGATGCCATTGTCCATGCTCAGCCAGGCAGCGACAGGTTTATGGCTGCCGCTGCTGCATATCAAATGTCTGAATTGGGAAGATTTGGGACTGGAGTATCTCTCACACTGGGTTTGCAGCATTGTGAGGGTGGTGGCATACCAATGCCTGCTGGGGCGCATCACGGTTTTGCTACCATGAGAGAAGATGATATGTACAATGCTGCAGCATCTTCTCTTGGGGAAACAGTGCCCTTTGAATGTGTAAATTCTGGGAATCCACAACAGAGGTTTGGTCCTTCTCATCTTTATCATGATTTTGTCGTGTAA | 2043 | 44.44 | MAAYYSNSNNERDTTPILYSSSREALLSSYEEASVLPRNLMMHVHSGTYMDSLPSQTQNGCDQMTSVGASGTAQQQQEFLSNLGGSQISEHDFNSWREDRSELLGSNSMRGPAIILPSRQNLQGQGLSLTLSTHIPSGIQMASLPYRNPDMGLTSFLSPNPSNSGEGGGRNGASRDEQLRNGENFSPGFQELAKGELSQYGMSSTARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSPREHETKSGKDGDAGTKTDSSMLTASGVSSNPQETGSNSTCELSHAERQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVKATRRSLGEHENSGSDKGVGISRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEETGNADLDSISSSENAAKATKGDIRTCEDEREEDLQQSASSTATERCSAGDIMDLKSDQVSSLGIAGSTRLTSFQNGPIESQNELVKPREEQRPNVSNSNFFPDAIVHAQPGSDRFMAAAAAYQMSELGRFGTGVSLTLGLQHCEGGGIPMPAGAHHGFATMREDDMYNAAASSLGETVPFECVNSGNPQQRFGPSHLYHDFVV | 680 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 48310821 | 48314071 | - | evm.model.ptg000010l.1025 | HCH2g0479 | 539704 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0479 | 680 | SMART | prehox3 | 203 | 358 | IPR006563 | - | |
HCH2g0479 | 680 | CDD | homeodomain | 408 | 469 | IPR001356 | GO:0003677(InterPro) | |
HCH2g0479 | 680 | ProSiteProfiles | 'Homeobox' domain profile. | 405 | 468 | IPR001356 | GO:0003677(InterPro) | |
HCH2g0479 | 680 | Pfam | Associated with HOX | 210 | 357 | IPR006563 | - | |
HCH2g0479 | 680 | MobiDBLite | consensus disorder prediction | 230 | 287 | - | - | |
HCH2g0479 | 680 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 145 | 504 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH2g0479 | 680 | Pfam | Homeobox KN domain | 425 | 464 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH2g0479 | 680 | SMART | HOX_1 | 408 | 472 | IPR001356 | GO:0003677(InterPro) | |
HCH2g0479 | 680 | SUPERFAMILY | Homeodomain-like | 409 | 475 | IPR009057 | - | |
HCH2g0479 | 680 | MobiDBLite | consensus disorder prediction | 257 | 287 | - | - | |
HCH2g0479 | 680 | FunFam | BEL1-like homeodomain protein 4 | 411 | 473 | - | - | |
HCH2g0479 | 680 | MobiDBLite | consensus disorder prediction | 547 | 575 | - | - | |
HCH2g0479 | 680 | Gene3D | - | 403 | 482 | - | - | |
HCH2g0479 | 680 | MobiDBLite | consensus disorder prediction | 150 | 188 | - | - | |
HCH2g0479 | 680 | MobiDBLite | consensus disorder prediction | 230 | 256 | - | - | |
HCH2g0479 | 680 | MobiDBLite | consensus disorder prediction | 481 | 495 | - | - | |
HCH2g0479 | 680 | MobiDBLite | consensus disorder prediction | 480 | 523 | - | - | |
HCH2g0479 | 680 | MobiDBLite | consensus disorder prediction | 497 | 512 | - | - | |
HCH2g0479 | 680 | Coils | Coil | 290 | 310 | - | - | |
HCH2g0479 | 680 | MobiDBLite | consensus disorder prediction | 153 | 169 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0479 | HCH-Chr11:5458923 | HCH2g0479 | HCH-Chr2:48310821 | 3.50E-85 | dispersed | |
HCH2g0479 | HCH-Chr2:48310821 | HCH2g1297 | HCH-Chr2:55081650 | 1.90E-85 | dispersed | |
HCH14g0218 | HCH-Chr14:29123419 | HCH2g0479 | HCH-Chr2:48310821 | 1.30E-71 | transposed | |
HCH2g0120 | HCH-Chr2:7860613 | HCH2g0479 | HCH-Chr2:48310821 | 1.30E-71 | transposed | |
HCH4g1319 | HCH-Chr4:9296258 | HCH2g0479 | HCH-Chr2:48310821 | 1.10E-96 | transposed | |
HCH2g0479 | HCH-Chr2:48310821 | HCH4g0753 | HCH-Chr4:4846249 | 1.70E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33160 | PF07526 | POX | 3.20E-51 | No_clan | HCH | TF |
Pathway information
