Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0479 ATGGCTGCTTACTACTCTAATTCTAATAATGAAAGGGATACTACTCCCATCCTTTACTCAAGTTCAAGGGAAGCTTTGCTCAGTTCGTATGAAGAAGCATCGGTTCTTCCCCGAAATCTGATGATGCATGTACATTCTGGGACTTACATGGATTCATTGCCATCACAGACGCAAAATGGTTGTGATCAGATGACATCAGTTGGAGCTTCAGGAACTGCCCAACAGCAGCAAGAATTTTTATCAAATCTTGGTGGTTCACAAATTTCTGAGCATGATTTCAACTCATGGAGAGAGGATAGAAGTGAACTTTTGGGTTCAAACTCAATGCGCGGCCCTGCCATTATTCTCCCTAGTAGGCAGAATTTGCAGGGTCAGGGATTATCTCTTACTCTTAGTACACATATTCCATCTGGAATCCAAATGGCTTCACTCCCATATCGGAATCCTGATATGGGTTTAACTTCATTCTTGAGTCCTAATCCAAGTAATTCAGGTGAGGGTGGCGGCAGAAATGGTGCTTCTAGAGATGAACAGCTGAGAAATGGAGAAAACTTTTCACCTGGTTTTCAAGAATTGGCTAAAGGTGAATTATCTCAGTACGGCATGTCTAGTACTGCAAGAACCATGCCCAACTCGAAGTACCTCAAGGCAGCACAACAATTGCTTGATGAAGTTGTCAATGTCAGGAAAGCTTTGAAACGACCAAATAATGAGAGAAACCAGAGCCCACGTGAGCATGAAACGAAGAGCGGAAAGGATGGTGATGCAGGAACCAAAACTGATAGTTCCATGCTCACTGCTAGTGGAGTATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTTTCACATGCTGAAAGGCAAGATTTGCAGAACAAGTTGACAAAACTTTTATACATGTTGGATGAGGTTGATAGGAGGTACAATCAGTATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCAGGATGTGGCGCATCTAAGCCATATACTGCACTTGCACTTCAGACTATATCCCGTCATTTTCGTTGCTTGCGTGATGCAATAGCGGGTCAAGTCAAAGCTACTCGTAGAAGCCTGGGAGAGCATGAAAATTCTGGAAGTGATAAAGGAGTTGGAATTAGTCGTCTTCGATATGTGGACCAGCAGTTAAGACAACAAAGGGCTCTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAACGAGGGTTGCCTGAGAACTCCGTTTCAATTCTCCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCGTATCCAAAGGATTCTGATAAGATTATGCTGGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCTAATTGGTTCATCAATGCACGTGTGCGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAGACGGGCAATGCGGACTTGGACTCCATATCATCATCTGAAAATGCCGCCAAGGCAACAAAAGGAGATATTCGGACATGTGAAGATGAAAGAGAGGAGGATCTGCAACAAAGTGCAAGTTCAACAGCCACAGAAAGATGTAGTGCCGGAGATATTATGGACTTAAAATCTGATCAGGTCTCCAGTCTTGGAATTGCAGGTTCCACGAGACTAACCAGTTTCCAGAACGGCCCTATAGAATCCCAAAATGAGTTGGTGAAGCCGAGGGAAGAGCAAAGGCCTAATGTAAGTAACTCCAATTTCTTTCCTGATGCCATTGTCCATGCTCAGCCAGGCAGCGACAGGTTTATGGCTGCCGCTGCTGCATATCAAATGTCTGAATTGGGAAGATTTGGGACTGGAGTATCTCTCACACTGGGTTTGCAGCATTGTGAGGGTGGTGGCATACCAATGCCTGCTGGGGCGCATCACGGTTTTGCTACCATGAGAGAAGATGATATGTACAATGCTGCAGCATCTTCTCTTGGGGAAACAGTGCCCTTTGAATGTGTAAATTCTGGGAATCCACAACAGAGGTTTGGTCCTTCTCATCTTTATCATGATTTTGTCGTGTAA 2043 44.44 MAAYYSNSNNERDTTPILYSSSREALLSSYEEASVLPRNLMMHVHSGTYMDSLPSQTQNGCDQMTSVGASGTAQQQQEFLSNLGGSQISEHDFNSWREDRSELLGSNSMRGPAIILPSRQNLQGQGLSLTLSTHIPSGIQMASLPYRNPDMGLTSFLSPNPSNSGEGGGRNGASRDEQLRNGENFSPGFQELAKGELSQYGMSSTARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSPREHETKSGKDGDAGTKTDSSMLTASGVSSNPQETGSNSTCELSHAERQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVKATRRSLGEHENSGSDKGVGISRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEETGNADLDSISSSENAAKATKGDIRTCEDEREEDLQQSASSTATERCSAGDIMDLKSDQVSSLGIAGSTRLTSFQNGPIESQNELVKPREEQRPNVSNSNFFPDAIVHAQPGSDRFMAAAAAYQMSELGRFGTGVSLTLGLQHCEGGGIPMPAGAHHGFATMREDDMYNAAASSLGETVPFECVNSGNPQQRFGPSHLYHDFVV 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48310821 48314071 - evm.model.ptg000010l.1025 HCH2g0479 539704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0479 680 SMART prehox3 203 358 IPR006563 -
HCH2g0479 680 CDD homeodomain 408 469 IPR001356 GO:0003677(InterPro)
HCH2g0479 680 ProSiteProfiles 'Homeobox' domain profile. 405 468 IPR001356 GO:0003677(InterPro)
HCH2g0479 680 Pfam Associated with HOX 210 357 IPR006563 -
HCH2g0479 680 MobiDBLite consensus disorder prediction 230 287 - -
HCH2g0479 680 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 145 504 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH2g0479 680 Pfam Homeobox KN domain 425 464 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH2g0479 680 SMART HOX_1 408 472 IPR001356 GO:0003677(InterPro)
HCH2g0479 680 SUPERFAMILY Homeodomain-like 409 475 IPR009057 -
HCH2g0479 680 MobiDBLite consensus disorder prediction 257 287 - -
HCH2g0479 680 FunFam BEL1-like homeodomain protein 4 411 473 - -
HCH2g0479 680 MobiDBLite consensus disorder prediction 547 575 - -
HCH2g0479 680 Gene3D - 403 482 - -
HCH2g0479 680 MobiDBLite consensus disorder prediction 150 188 - -
HCH2g0479 680 MobiDBLite consensus disorder prediction 230 256 - -
HCH2g0479 680 MobiDBLite consensus disorder prediction 481 495 - -
HCH2g0479 680 MobiDBLite consensus disorder prediction 480 523 - -
HCH2g0479 680 MobiDBLite consensus disorder prediction 497 512 - -
HCH2g0479 680 Coils Coil 290 310 - -
HCH2g0479 680 MobiDBLite consensus disorder prediction 153 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0479 HCH-Chr11:5458923 HCH2g0479 HCH-Chr2:48310821 3.50E-85 dispersed
HCH2g0479 HCH-Chr2:48310821 HCH2g1297 HCH-Chr2:55081650 1.90E-85 dispersed
HCH14g0218 HCH-Chr14:29123419 HCH2g0479 HCH-Chr2:48310821 1.30E-71 transposed
HCH2g0120 HCH-Chr2:7860613 HCH2g0479 HCH-Chr2:48310821 1.30E-71 transposed
HCH4g1319 HCH-Chr4:9296258 HCH2g0479 HCH-Chr2:48310821 1.10E-96 transposed
HCH2g0479 HCH-Chr2:48310821 HCH4g0753 HCH-Chr4:4846249 1.70E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33160 PF07526 POX 3.20E-51 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0479 - - - 0.0