Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0502 ATGGCTACCACCGCTGTAAATCTCTCTTCTCTCTCCTCCTCCTCTCTCTCACATCATTCTCCTCATATTCCTCTCTCTTTCCCCTGTAAAACCCTTCTAAAACCCCTTTTCCCTCATTCCCACAAAACCCATCTTCTTTTCTCGGCCAAAAACCCTATTTCCGACGTTATATCATCAAATAAACCATACCCAATTGATGATTCCGTCCATTTCGATGATGACGATAAGCCACGCGAGGAGTGCGGCGTCGTCGGCATATACGGCGATTCTGAAGCTTCTCGTTTATGTTATTTAGCGCTTCACGCGCTCCAGCACCGTGGCCAAGAAGGTGCCGGTATCGTTGCCGTTAACGATAACGTGCTTCAGTCGGTTACCGGCGTTGGTCTCGTCTCTGAAGTCTTTAACCAGACGAAACTCGATCAATTGCCCGGTGATTCGGCTATCGGGCACGTTCGGTACTCGACGGCGGGCTCGTCGATGCTTAAGAATGTCCAGCCTTTCGTCGCCGGATACCGATTTGGCTCTGTTGGGGTTGCTCATAATGGTAATTTAGTGAATTATCGTTCTTTAAGAGCTAAGCTTGAAGATAATGGTTCAATTTTTAATACTAGTTCTGATACTGAGGTTGTTCTTCACCTTATTGCTATTTCTAAGCATAGACCTTTTATATTGAGAATTGTTGATGCTTGTGAACAACTTGAAGGGGCTTATTCTATGGTTTTTATAACTGAAGATAAATTGGTTGCTGTTCGTGATCCTTTCGGTTTTCGCCCCCTTGTTATGGGGAGGAGAAGTAACGGGGCCGTTGTCTTTGCCTCTGAGACTTGTGCTCTTGATTTGATTGAGGCAACATATGAGAGAGAAGTGTTTCCTGGTGAGGTTTTGGTTGTGGATAAAAATGGGGTTCAATCACTTTGTTTAATGACTCATCCGCAGCCGAAATCGTGCATCTTTGAACATATTTACTTTGCTCTTCCTAACTCGGTTGTTTTCGGTCGGTCTGTGTACGAGTCACGGCGTGCTTTCGGTGAGATACTTGCCACGGAGGCTCCGGTTGATTGTGACGTTGTGATTGCTGTTCCGGATTCTGGTGTAGTGGCTGCTCTTGGATATGCAGCCAAAGCAGGGGTTGCTTTTCAACAGGGGCTTATAAGGTCTCACTATGTGGGGAGGACTTTTATCGAGCCATCACAGAAAATTCGGGACTTCGGTGTGAAGCTGAAGCTTTCTCCCGTTCGAGCAGTGTTAGAAGGGAAACGGGTAGTGGTTGTTGATGATTCAATTGTGAGAGGAACCACATCTTCAAAGATTGTGAGGTTGATAAAGGAAGCAGGAGCAAAAGAAGTTCATATGAGGATAGCTAGCCCTCCAATCATAGGGTCATGCTATTATGGAGTGGACACACCAAGCTCTGAAGAACTGATTTCCAACAGGATGAGTGTGGAGGAGATTAGAGAGTTTATCGGTTCTGATTCACTTGCTTTTCTGCCATTTGATAGCTTGCAGAAATTGTTAGGGAGTGAATCTCCAAACTATTGTTATGCTTGTTTTTCGGGCAATTATCCAGTGGAGCCAAGAGAGATTAAGGTTAAAAGGGTTGGAGATTTTGTGGATGATGGATTGAATGGAAGCTTGGAATCCATTGATGGAGGTTGGGTTAGAAACCAGACTCTGGATAGTCATCTCACAGTGGAGAAAGTGTGA 1704 45.07 MATTAVNLSSLSSSSLSHHSPHIPLSFPCKTLLKPLFPHSHKTHLLFSAKNPISDVISSNKPYPIDDSVHFDDDDKPREECGVVGIYGDSEASRLCYLALHALQHRGQEGAGIVAVNDNVLQSVTGVGLVSEVFNQTKLDQLPGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRSLRAKLEDNGSIFNTSSDTEVVLHLIAISKHRPFILRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVLVVDKNGVQSLCLMTHPQPKSCIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLPFDSLQKLLGSESPNYCYACFSGNYPVEPREIKVKRVGDFVDDGLNGSLESIDGGWVRNQTLDSHLTVEKV 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48682003 48683706 + evm.model.ptg000010l.1002 HCH2g0502 539727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0502 567 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 75 529 - GO:0004044(PANTHER)|GO:0005737(PANTHER)|GO:0006164(PANTHER)
HCH2g0502 567 MobiDBLite consensus disorder prediction 1 21 - -
HCH2g0502 567 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 81 304 IPR029055 -
HCH2g0502 567 Pfam Phosphoribosyl transferase domain 338 450 IPR000836 -
HCH2g0502 567 SUPERFAMILY PRTase-like 316 527 IPR029057 -
HCH2g0502 567 CDD PRTases_typeI 343 454 IPR000836 -
HCH2g0502 567 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 81 300 IPR017932 -
HCH2g0502 567 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 81 522 IPR029055 -
HCH2g0502 567 Gene3D - 340 504 IPR029057 -
HCH2g0502 567 Pfam Glutamine amidotransferase domain 161 278 IPR017932 -
HCH2g0502 567 CDD GPATase_N 81 331 IPR035584 -
HCH2g0502 567 NCBIfam amidophosphoribosyltransferase 81 522 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
HCH2g0502 567 Hamap Amidophosphoribosyltransferase [purF]. 80 521 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0502 K00764 - - csv:101203840 938.717
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g0445 . 33 188 PRT Gene Family AT1G80050 78.8 1.0e-66 249.6
HCH5g0390 . 30 180 PRT Gene Family AT1G80050 77.5 9.2e-63 236.5
HCH6g0996 . 30 180 PRT Gene Family AT1G80050 76.8 1.6e-62 235.7
HCH4g0591 . 104 256 PRT Gene Family AT1G80050 68.0 7.0e-55 210.3
HCH4g0445 . 1 148 PRT Gene Family AT5G11160 80.4 6.2e-62 233.8
HCH4g0591 . 82 219 PRT Gene Family AT5G11160 72.5 8.1e-54 206.8
HCH6g0996 . 8 145 PRT Gene Family AT5G11160 73.2 1.4e-53 206.1
HCH5g0390 . 8 145 PRT Gene Family AT5G11160 74.6 1.8e-53 205.7
HCH4g0591 . 75 257 PRT Gene Family AT1G27450 79.8 3.6e-79 291.2
HCH6g0996 . 1 180 PRT Gene Family AT1G27450 74.4 5.9e-74 273.9
HCH5g0390 . 7 180 PRT Gene Family AT1G27450 74.1 8.0e-71 263.5
HCH4g0445 . 11 183 PRT Gene Family AT1G27450 68.8 1.7e-65 245.7
HCH2g0502 . 72 554 PRT Gene Family AT2G16570 84.7 1.7e-241 832.0
HCH2g0502 . 72 554 PRT Gene Family AT4G34740 86.0 1.4e-243 839.0
HCH2g0502 . 1 527 PRT Gene Family AT4G38880 67.9 5.3e-200 694.1
HCH4g0591 . 75 257 PRT Gene Family AT1G27450 79.8 3.6e-79 291.2
HCH6g0996 . 1 180 PRT Gene Family AT1G27450 74.4 5.9e-74 273.9
HCH5g0390 . 7 180 PRT Gene Family AT1G27450 74.1 8.0e-71 263.5
HCH4g0445 . 11 183 PRT Gene Family AT1G27450 68.8 1.7e-65 245.7
HCH4g0445 . 33 188 PRT Gene Family AT1G80050 78.8 1.0e-66 249.6
HCH5g0390 . 30 180 PRT Gene Family AT1G80050 77.5 9.2e-63 236.5
HCH6g0996 . 30 180 PRT Gene Family AT1G80050 76.8 1.6e-62 235.7
HCH4g0591 . 104 256 PRT Gene Family AT1G80050 68.0 7.0e-55 210.3
HCH5g0390 . 1 97 PRT Gene Family AT4G22570 85.7 2.8e-44 174.5
HCH6g0996 . 5 97 PRT Gene Family AT4G22570 86.0 1.8e-43 171.8
HCH4g0591 . 77 171 PRT Gene Family AT4G22570 78.9 3.6e-39 157.5
HCH4g0445 . 11 100 PRT Gene Family AT4G22570 81.1 1.4e-38 155.6
HCH6g0996 . 1 96 PRT Gene Family AT4G12440 84.4 5.9e-41 163.3
HCH5g0390 . 1 96 PRT Gene Family AT4G12440 83.3 2.3e-40 161.4
HCH4g0591 . 75 170 PRT Gene Family AT4G12440 80.2 1.6e-38 155.2
HCH4g0445 . 4 99 PRT Gene Family AT4G12440 80.2 2.1e-38 154.8
HCH4g0445 . 1 148 PRT Gene Family AT5G11160 80.4 6.2e-62 233.8
HCH4g0591 . 82 219 PRT Gene Family AT5G11160 72.5 8.1e-54 206.8
HCH6g0996 . 8 145 PRT Gene Family AT5G11160 73.2 1.4e-53 206.1
HCH5g0390 . 8 145 PRT Gene Family AT5G11160 74.6 1.8e-53 205.7
HCH13g0264 . 1 186 PRT Gene Family AT1G71750 63.5 4.0e-68 254.6
HCH12g1342 . 16 469 PRT Gene Family AT1G55810 84.6 2.4e-225 778.1
HCH9g0068 . 19 481 PRT Gene Family AT1G55810 74.4 1.8e-201 698.7
HCH12g1342 . 66 468 PRT Gene Family AT3G27440 76.4 7.9e-183 636.7
HCH9g0068 . 79 481 PRT Gene Family AT3G27440 75.7 2.8e-180 628.2
HCH9g0068 . 1 481 PRT Gene Family AT3G27190 86.1 9.3e-244 839.3
HCH12g1342 . 3 468 PRT Gene Family AT3G27190 73.9 3.3e-209 724.5
HCH9g0712 . 27 287 PRT Gene Family AT3G53900 69.5 1.2e-103 373.2
HCH12g1342 . 1 469 PRT Gene Family AT4G26510 84.6 3.4e-235 810.8
HCH9g0068 . 5 481 PRT Gene Family AT4G26510 76.3 7.5e-214 740.0
HCH9g0068 . 1 481 PRT Gene Family AT5G40870 87.6 1.8e-247 851.7
HCH12g1342 . 3 471 PRT Gene Family AT5G40870 73.4 3.4e-209 724.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40