Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0520 ATGGATCAGCTTATACCACGCGACGCTTTCATTCAAAACACAGCCATTCCCTCTATTCAACCCAGTTCCAGCCAAAGGTCTGAAGGGGAGTTCAGGGATTCTGTAGCTGCTAGAAAAAGTCAGAAGGCTGACAGAGAGAAACTGAGAAGGGATCGACTGAACGAACAGTTTGTTGAACTGGGAAATGTTTTAGATCCTGATAGACCCAAAAATGACAAAGCAACCATTTTAATGGATACAATTCTATTGCTGAAGGACCTGACATCTGACGTTGACAAACTGAAAGCTGAGTATGCTACACTGACCGAAGAATCACGTGAGTTAACCCAGGAAAAGAATGATCTGAGAGAAGAAAAGGCATCACTCAAATCTGATATCGAAAATCTTAATGCTCAGTATCAGCAGAGACTCAGAGCTGTGTACCCTTGGGCTGCTATGGATCACTCAGTTGTCATGGCCCCTCCCCCTTATCCATTTCCAGTGCCGATGCAAATGCCTCCAGGGCCATTTCCCATGCATCCATCCTTGCAGCCTTATCCGTTCTTTGGAAATCAGAGTCCTGGGGTAATTGCAAACCCTTGTTCCACCTTTGTTCCGTATATAACTCCTAATTCTATGGTCGAGCAGCAGGTCTCCCAATACGCACCACCTTTCATTCATTCAGGTAACCAGTCCAATAGTTTGAGCAAACAAGATTCCGGGAATAAGTCCTCAGGTGAAAGCAAGATTGAGAAAAGCGAAGATTCTAACGAAGTTACAACTGATTTGGAGTTGAAGACTCCTGGATCCACGACAGATCAGGATATATCATTTGAACAAACAAAAGGTAAGAGAACTTGCAGGAAAGAAAAGAATGTATTGGAAGAGAGTTCTTCGAGTAGGTGCTCTTCATCTCGTAGTGTAGATGCCAATTCATCTTGTGGTACACTTAATGACAGAAAACATGCGGATAAATGTGAAAAAAACATATAA 972 42.9 MDQLIPRDAFIQNTAIPSIQPSSSQRSEGEFRDSVAARKSQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILMDTILLLKDLTSDVDKLKAEYATLTEESRELTQEKNDLREEKASLKSDIENLNAQYQQRLRAVYPWAAMDHSVVMAPPPYPFPVPMQMPPGPFPMHPSLQPYPFFGNQSPGVIANPCSTFVPYITPNSMVEQQVSQYAPPFIHSGNQSNSLSKQDSGNKSSGESKIEKSEDSNEVTTDLELKTPGSTTDQDISFEQTKGKRTCRKEKNVLEESSSSRCSSSRSVDANSSCGTLNDRKHADKCEKNI 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48903348 48906256 - evm.model.ptg000010l.984 HCH2g0520 539745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0520 323 SMART finulus 43 93 IPR011598 GO:0046983(InterPro)
HCH2g0520 323 Coils Coil 84 139 - -
HCH2g0520 323 MobiDBLite consensus disorder prediction 237 254 - -
HCH2g0520 323 MobiDBLite consensus disorder prediction 217 236 - -
HCH2g0520 323 MobiDBLite consensus disorder prediction 271 289 - -
HCH2g0520 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 37 87 IPR011598 GO:0046983(InterPro)
HCH2g0520 323 MobiDBLite consensus disorder prediction 290 310 - -
HCH2g0520 323 MobiDBLite consensus disorder prediction 217 323 - -
HCH2g0520 323 CDD bHLH_AtILR3_like 42 116 - -
HCH2g0520 323 MobiDBLite consensus disorder prediction 13 30 - -
HCH2g0520 323 Gene3D - 35 115 IPR036638 GO:0046983(InterPro)
HCH2g0520 323 MobiDBLite consensus disorder prediction 31 51 - -
HCH2g0520 323 PANTHER TRANSCRIPTION FACTOR BHLH121 18 306 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
HCH2g0520 323 MobiDBLite consensus disorder prediction 1 51 - -
HCH2g0520 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 106 IPR036638 GO:0046983(InterPro)
HCH2g0520 323 Coils Coil 36 56 - -
HCH2g0520 323 Pfam Helix-loop-helix DNA-binding domain 38 87 IPR011598 GO:0046983(InterPro)
HCH2g0520 323 MobiDBLite consensus disorder prediction 255 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0520 HCH-Chr2:48903348 HCH2g0758 HCH-Chr2:51219664 1.80E-09 dispersed
HCH14g0647 HCH-Chr14:35147169 HCH2g0520 HCH-Chr2:48903348 1.10E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33164 PF00010 HLH 2.00E-07 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0520 - - - 0.0