Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0539 ATGGGATTTTTCCATCTCCCTCCTTCTTCAACAGCTTTGAAATGGCTTGGCTTTGTCTCCGCCGTCTGGGTTCAAGCCATTTCCGGCAACAACTACACGTTTTCCAACTACTCCGATGCTCTTAAGACTCTCATGAATCTTAATCAGCTGGAACTTAATAATCTCTCTGTCGCTAAAGATGTGGGAAAAGCTTTCGGTCTTCTTGCGGGAATTGCTTGTGACCGGTTTCCCACTTGGGTTATCTTGCTTATTGGCTCTGTTGAAGGGCTTCTTGGATATGGCACTCAATGGCTCGTTGTTAGTGAGAGAATTAAACCTCTCCCTTATTGGCAGATGTGTATCTTCCTATGCATGGGAGGAAACAGCACAACCTGGATGAACACGGCGGTGTTGGTGACATGTATCAGAAACTTCCGGAAGAATCGAGGTCCAGTTTCCGGCATACTAAAAGGCTATGTCGGCCTCAGCACCGCCATATTCACCGATCTCTGTACGGCTCTTTTCTCCAGTAACCCATCTTCCTTCCTCATAATGCTGGCCGTTGTTCCCTTCGCCGTTTGCCTGTTTGCCATGTTCTTCCTCCGCGAGATCCCACCCACCACCACCGCCGAAGTCCAAGAGGAATCAACCTACTTCGCCGTCTTCAATGCTCTCGCCGTCGTCGTCGCTCTTTATCTTTCAAGCTTTGACTTTATAAAAAACTCAAACAAAGTTTTCTCTCAAATGTTTTCCATTGGGTTACTGATTCTCTTAGCTTCTCCCATAGTTATTCCCGTATATTCGTTTATCAAAAGCTGTTACTCGAACCGGGTAGTACCCGATGAGGAGGCCAGAATCAAAGAACCGTTGTTGCTCAACGAAGAAGCTGCGGTGGAAGAGAGTACGGAAACACAGAGAGAGGTGGAGGCAGAGGTGGAGACGGTCACGGAGGAAGTGGCGGAGGTGAAGAAGAAGAAGAAGCCGGTGATCGGAGAAGAACATACGATAACGGAGGCGTTGAAAACGATTGATTTTTGGATATTGTTTGTGTCGTTTTTGTGTGGAGTGGGAACAGGATTGGCGGTAATGAATAACATGGGACAGATTGGTCTTGCACTCGGATATGCCGACGTATCCATGTTTGTTTCTCTTACTAGCATTTGGGGCTTCTTCGGTCGGATTCTTTCCGGTTCCGTTTCTGAGCACTTTCTCAAGAAAGCCGGCACCCCACGGCCTCTATGGAACGCAGCTTCTCAAATCATAATGGCCGTCGGTTACATTCTGATGGCCATAGCCATGCCCGGCTCCCTCTTCATAGGCTCCATCGTCGTCGGAGTTTGCTACGGTGTCCGTCTCTCCATCACGGTCCCGACAGCCTCGGAGCTCTTCGGTCTCAAATACTACGGTCTCATCTACAACATTCTCATCCTCAATCTCCCCATTGGCTCCTTCCTCTTCTCCGGTCTCCTCGCCGGAATTCTCTACGACATGGAGGCTACACCGGTGGAAGGCGGCGGCAACACTTGCATCGGCGGTCATTGCTATAGAACTGTGTTTTTGGTGATGGCTTCCGCTTGTGTAATTGGGTTCTTTTTGGATGTTTGGTTGGCGTTTAGAACCATGGGACTCTATTCGAAGCTCAAAGTCAGCAAGAAATCATCAAAGAAGGGAAGCAGCTCATAG 1662 48.62 MGFFHLPPSSTALKWLGFVSAVWVQAISGNNYTFSNYSDALKTLMNLNQLELNNLSVAKDVGKAFGLLAGIACDRFPTWVILLIGSVEGLLGYGTQWLVVSERIKPLPYWQMCIFLCMGGNSTTWMNTAVLVTCIRNFRKNRGPVSGILKGYVGLSTAIFTDLCTALFSSNPSSFLIMLAVVPFAVCLFAMFFLREIPPTTTAEVQEESTYFAVFNALAVVVALYLSSFDFIKNSNKVFSQMFSIGLLILLASPIVIPVYSFIKSCYSNRVVPDEEARIKEPLLLNEEAAVEESTETQREVEAEVETVTEEVAEVKKKKKPVIGEEHTITEALKTIDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYADVSMFVSLTSIWGFFGRILSGSVSEHFLKKAGTPRPLWNAASQIIMAVGYILMAIAMPGSLFIGSIVVGVCYGVRLSITVPTASELFGLKYYGLIYNILILNLPIGSFLFSGLLAGILYDMEATPVEGGGNTCIGGHCYRTVFLVMASACVIGFFLDVWLAFRTMGLYSKLKVSKKSSKKGSSS 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49198931 49201964 - evm.model.ptg000010l.965 HCH2g0539 539764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0539 553 SUPERFAMILY MFS general substrate transporter 16 534 IPR036259 -
HCH2g0539 553 Pfam Nodulin-like 14 259 IPR010658 -
HCH2g0539 553 Coils Coil 284 318 - -
HCH2g0539 553 CDD MFS_Mch1p_like 13 522 - -
HCH2g0539 553 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 539 - GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0539 HCH-Chr2:49198931 HCH8g1333 HCH-Chr8:48268150 2.50E-83 dispersed
HCH13g0945 HCH-Chr13:12917262 HCH2g0539 HCH-Chr2:49198931 7.20E-89 transposed
HCH3g1492 HCH-Chr3:52945267 HCH2g0539 HCH-Chr2:49198931 4.30E-64 transposed
HCH6g0265 HCH-Chr6:3768863 HCH2g0539 HCH-Chr2:49198931 9.00E-97 transposed
HCH6g1301 HCH-Chr6:47192178 HCH2g0539 HCH-Chr2:49198931 2.10E-64 transposed
HCH2g0539 HCH-Chr2:49198931 HCH7g0478 HCH-Chr7:3626169 3.00E-222 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0539 - - - 0.0