Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0544 ATGGCTTCTTTTCTCTCTCTTTCTCTTTCTCTCTCCATTTTTCTCCTTTCTTTCACCCATTTCTCCCCCATTTCCGCCCTCTTCCCTTTGAAAAAAACCTTCATTTTCCTCATCGACTCTCAATCTAAACCCTCCATTTTCCCCACCCATTACCACTGGTACACTTCTGAATTCGTTCAATCCCCACAAATCCTTCATCTTTACGACACCCTTTTCCATGGATTCTCCGCTTCTCTCACTCCCGACCAATTCTCTTCCCTCAAACAACACCCTTCCATTCTAGCTGCCTTCGAAGACCGTCGCCGCAATCTCCACACCACTCGCTCCCCTCAATTCCTCGGCCTCCGTAACCAGCGCGGTCTTTGGTCCGATTCCGATTACGGCTCTGACGTCATCGTCGGAGTTTTCGATACTGGGATTTCCCCAGAACGACGTAGTTTCTCCGATGTTAATCTCGGTCCGATCCCCCGTCGTTGGAAGGGTGTTTGTGAAACCGGAACGAAATTCAGTGCTAAAAACTGCAACAGGAAAATCATCGGAGCGAGGTTTTTCTCTAAAGGTCATGAAGCCGGGTCTAATAACGGCGGTGGTCCATTCATTGGGATTAATGATACCGTTGAGTTTCGATCACCGAGAGACGCTGACGGACATGGGACCCACACGGCTTCCACGGCGGCGGGGCGTTATTCGTTCCAAGCGAGTTTAGACGGTTACGCTTCTGGGATTGCGAAGGGGGTTGCTCCGAAAGCGAGATTGGCGGTTTATAAAGTTTGCTGGAAGAACGCCGGTTGTTTTGATTCCGATATCCTCGCGGCGTTTGATGCTGCTGTTAAAGACGGAGTTGATGTCATTTCGATTTCGATTGGTGGCGGTGATGGCGTTTCTTCCCCGTATTATCTCGACCCAATTGCGATTGGGGCGTACGGTGCTGCTTCTAGAGGTGTTTTTGTTTCGTCTTCCGCTGGTAATGATGGGCCTAATGGGATGTCTGTGACGAATTTGGCGCCATGGATGACGACGGTCGGGGCGGGGACGATTGATCGGAGTTTTCCGGCTGTGGTGAGTCTTGGCAATGGGCAGAAGGTTAATGGGGCGTCATTGTATTCAGGGGCAGCATTGAATGGGAAAATGTATCCTTTGGTTTATCCTGGGAAAAATGGGGTTCTTGCTGCTTCTCTTTGTATGGAGAATTCGCTTGATTTTGAGGTTGTCAGCGGCAAAATTGTAATATGTGATCGTGGGAGTAGTCCTAGAGTGGCCAAGGGATTGGTGGTTAAGAAAGCTGGTGGTGTTGGAATGATTCTTGCTAATGGAATTTCTAATGGTGAAGGGCTTGTGGGTGATGCTCATGTGATTCCTGCTTGTGCTGTGGGTTCTGATGAAGGTGATGCTTTGAAAGCTTATGTGAAATCGAATCCCAATCCTACTGCTACCATTGATTTCAAGGGTACTATAATTGGGATCAAACCGGCCCCTGTCGTGGCGTCGTTCTCGGCCAGAGGACCGAGTGGATTGAATCCGGAGATTCTGAAGCCGGATTTGATTGCTCCTGGGGTTAACATTTTGGCTGCTTGGACAGATTCTGTCGGTCCGACTGGCTTGGATTTCGATACTCGAAAAACCGAGTTCAATATCTTGTCCGGGACATCAATGGCTTGTCCTCATGTCAGTGGTGCTGCTGCGTTGCTTAAATCTGCTCATCCAGATTGGAGTCCGGCTGCATTGAGATCTGCTTTGATGACGACGGCGAGAATTGTTGATAATCGAGGGCTACCGATGACTGAGGAGTCGACAGGAAAACCATCTACACCTTATGATTTTGGTGCTGGACATGTGAATTTGGGACTTGCAATGGACCCTGGGTTGGTGTATGATATCATAAATGCTGATTATGTGAACTTCTTATGCGGAATTGGGTACGGAGCGAAGACGATTCAGGTGATCACGAGGACGCCGGTGACTTGTCCTGCTAAGAAACCATTGCCGGAGAACCTGAATTACCCATCGATGGTTGCGCTGTTTTCAATTCCAGCCAAAGGGTTGTCGACCAAGTCGTTTATTCGTACGGTAACGAATGTCGGTCCATCGAATTCGACTTACCGAGCGAAAGTCGAGGCACCGAAAGGGGTGACGGTGAAAGTAAAGCCGACGAAACTAGTGTTCACAACAGCAGTGAAGAAGCAAAGTTTCGTTGTAACAGTATCAGCCGACAGCCAGAATCTGGCATTAGGTGATGCAGGGGCTGTTTTTGGTTCACTTTCTTGGTTGGATGGAAAGCATGTGGTCCGAAGCCCAATTGTGGTGACTCAAATAGAACCGTTGTGA 2325 48.77 MASFLSLSLSLSIFLLSFTHFSPISALFPLKKTFIFLIDSQSKPSIFPTHYHWYTSEFVQSPQILHLYDTLFHGFSASLTPDQFSSLKQHPSILAAFEDRRRNLHTTRSPQFLGLRNQRGLWSDSDYGSDVIVGVFDTGISPERRSFSDVNLGPIPRRWKGVCETGTKFSAKNCNRKIIGARFFSKGHEAGSNNGGGPFIGINDTVEFRSPRDADGHGTHTASTAAGRYSFQASLDGYASGIAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVKDGVDVISISIGGGDGVSSPYYLDPIAIGAYGAASRGVFVSSSAGNDGPNGMSVTNLAPWMTTVGAGTIDRSFPAVVSLGNGQKVNGASLYSGAALNGKMYPLVYPGKNGVLAASLCMENSLDFEVVSGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHVIPACAVGSDEGDALKAYVKSNPNPTATIDFKGTIIGIKPAPVVASFSARGPSGLNPEILKPDLIAPGVNILAAWTDSVGPTGLDFDTRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAALRSALMTTARIVDNRGLPMTEESTGKPSTPYDFGAGHVNLGLAMDPGLVYDIINADYVNFLCGIGYGAKTIQVITRTPVTCPAKKPLPENLNYPSMVALFSIPAKGLSTKSFIRTVTNVGPSNSTYRAKVEAPKGVTVKVKPTKLVFTTAVKKQSFVVTVSADSQNLALGDAGAVFGSLSWLDGKHVVRSPIVVTQIEPL 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49248762 49251086 + evm.model.ptg000010l.960 HCH2g0544 539769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0544 774 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 56 767 IPR045051 -
HCH2g0544 774 ProSiteProfiles Serine proteases, subtilase domain profile. 101 618 - -
HCH2g0544 774 Pfam Fibronectin type-III domain 664 768 IPR041469 -
HCH2g0544 774 FunFam Subtilisin-like protease SBT1.5 130 366 - -
HCH2g0544 774 Gene3D - 635 771 - -
HCH2g0544 774 SUPERFAMILY Subtilisin-like 104 622 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH2g0544 774 Pfam Peptidase inhibitor I9 40 105 IPR010259 -
HCH2g0544 774 SUPERFAMILY PA domain 400 474 IPR046450 -
HCH2g0544 774 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 30 105 IPR037045 -
HCH2g0544 774 Gene3D Peptidase S8/S53 domain 130 631 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH2g0544 774 PRINTS Subtilisin serine protease family (S8) signature 213 226 IPR015500 -
HCH2g0544 774 PRINTS Subtilisin serine protease family (S8) signature 547 563 IPR015500 -
HCH2g0544 774 PRINTS Subtilisin serine protease family (S8) signature 128 147 IPR015500 -
HCH2g0544 774 FunFam subtilisin-like protease SBT1.5 347 486 - -
HCH2g0544 774 Pfam Subtilase family 128 610 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH2g0544 774 Pfam PA domain 378 465 IPR003137 -
HCH2g0544 774 CDD PA_subtilisin_like 353 479 - -
HCH2g0544 774 CDD Peptidases_S8_3 104 583 IPR034197 -
HCH2g0544 774 ProSitePatterns Serine proteases, subtilase family, serine active site. 548 558 IPR023828 -
HCH2g0544 774 Gene3D - 347 486 - -
HCH2g0544 774 FunFam Subtilisin-like protease SBT1.5 635 771 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1153 HCH-Chr14:38356229 HCH2g0544 HCH-Chr2:49248762 1.30E-88 dispersed
HCH2g0544 HCH-Chr2:49248762 HCH8g0597 HCH-Chr8:42753632 3.60E-205 dispersed
HCH4g0630 HCH-Chr4:4128308 HCH2g0544 HCH-Chr2:49248762 7.20E-125 transposed
HCH4g1548 HCH-Chr4:12004080 HCH2g0544 HCH-Chr2:49248762 6.90E-233 transposed
HCH12g0105 HCH-Chr12:559257 HCH2g0544 HCH-Chr2:49248762 1.40E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0544 - - - 0.0