Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0558 ATGGAAGATGGTGAGCTTGAATCCTCTAACCCCGGAATGTTTTCGAGTTCGAATGTCGTTGAGCTACCGAGCAGTTGCTCGATGGATAGTTTCTTTGATGAAATTCTAAAGGACACTCATGCTTGCACTCACACTCATACTTGCAATCCTCCTGGTCCTGATTACTCACACACACATACCTGTTTACATGTCCACACTCAAATTTTTTCTTCCCCTGGTGATGATAAGGTTTCCACTGATGACACAGAAGAGTCTGTTGATTTAAAGCCGAAGAAACGACCGTTGGGTAACCGTGAAGCGGTTCGTAAGTATCGCGAGAAGAAAAAGGCTAGGGCTGCATCGTTGGAAGATGAGGTTGTGAGGTTGAGGGCTGTGAATCAGCAATTGGTGAAGAGGTTGCAAGGTCAAGCTGCATTGGAGGGTGAGATTTCCAGGCTCAAGTGTTTGCTTGTGGATATTCGGGGAAGAATTGAAGGAGAGATTGGATCATTTCCGTATCAGAAATTAGTCGATTCGAATCTGCCTAGCCAAAACACACCTGGTAGTTACATGATAAACCCTTGTAGTGGGCAGTTTAATGATCAGGTGTACTGCCTTCAGTCAGGGGCAGTTGGAAAGGGTGGAGAGAGTATTCCACTAAATGAGCAAAGTTTTAATGCTTGTGACTTTGAGAATCATCATCAGTGCTTGGAAAATCAGAACACAGGAGGAAAGGGGGCTTCCTGA 726 44.9 MEDGELESSNPGMFSSSNVVELPSSCSMDSFFDEILKDTHACTHTHTCNPPGPDYSHTHTCLHVHTQIFSSPGDDKVSTDDTEESVDLKPKKRPLGNREAVRKYREKKKARAASLEDEVVRLRAVNQQLVKRLQGQAALEGEISRLKCLLVDIRGRIEGEIGSFPYQKLVDSNLPSQNTPGSYMINPCSGQFNDQVYCLQSGAVGKGGESIPLNEQSFNACDFENHHQCLENQNTGGKGAS 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49429474 49430199 + evm.model.ptg000010l.946 HCH2g0558 539783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0558 241 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0558 241 Pfam Basic region leucine zipper 89 139 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0558 241 CDD bZIP 91 134 - -
HCH2g0558 241 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 189 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
HCH2g0558 241 MobiDBLite consensus disorder prediction 76 93 - -
HCH2g0558 241 SUPERFAMILY Leucine zipper domain 89 134 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0558 241 MobiDBLite consensus disorder prediction 72 93 - -
HCH2g0558 241 Coils Coil 98 132 - -
HCH2g0558 241 Gene3D - 76 153 - -
HCH2g0558 241 SMART brlzneu 85 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0534 HCH-Chr1:54315124 HCH2g0558 HCH-Chr2:49429474 6.50E-26 transposed
HCH2g0558 HCH-Chr2:49429474 HCH7g0470 HCH-Chr7:3530153 7.80E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33166 PF07716 bZIP_2 1.90E-14 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0558 K25785 - csv:101219501 384.03