Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0571 ATGTTCTCAGAGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGAGGTCGGATCGATTTGTGCACAAAGGTTCAGACGCCGGGGGTCGCCAGGATGGGCTCCTATGGTACAAAGACATTGGGCAGCATTCCGGTGGTGAATTTTCAATGGCTGTAGTTCAGGCCAACAATTTACTTGAGGATCAAAGCCAGATAGAGTCAGGCAGTTTGAGCGTGCACGAGTCTGGGCCATATGGTACCTTTGTTGGTGTATATGATGGGCACGGAGGGCCTGAGACATCTCGCTATGTAAATCATCACCTTTTCCAGCATCTTAAGAGATTTACTTCAGAGCAACAATCCATGTCAGTGGATGTCATTCGGAAGGCATTCCAAGCTACAGAAGAGGGGGTTATTGCTCAGGTTTCGAAACAATGGTCAATGAACCCACAAATTGCAGCTGTTGGATCTTGCTGCCTTGTTGGTGTAATTTGTGGCGGAACCCTTTACATTGCTAACCTGGGTGATTCCCGTGCTGTTTTAGGGAGAGTTGTGAAGGTAACGGGGGAAGTTCTGTCCATTCAGTTGTCAGCGGAGCATAATGCTGCCATAGAGTCCGTGAGGCAGGAGCTTCGTGCTCTGCATCCTGATGACTCAAAGATTGTAGTCTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATACAGATTTCTCGATCCATTGGTGATGTTTATTTAAAGAAAGCAGAGTTCAACAGGGAGCCTCTTTATGCTAAGTTCCGGCTTCGTGAACCCATCAAGAGGCCTATATTGAGCGCTGAGCCATCTATTTCAACGTTAGAATTGCAGCCACAGGACCAATTTATTATATTTGCTTCTGATGGGCTCTGGGAACACCTTAGCAATCAGGAGGCTGTTGATATTGTCCAAAACCATCCACATAGTGGAAGTGCAAGGAGGCTGGTGAAAGCAGCACTGCATGAAGCAGCAAAGAAGAGAGAAATGCGGTACTCCGATTTGAAGAAGATCGACCGTGGCGTACGGCGGCATTTCCACGATGACATTACGGTGATTGTCGTGTTTCTCGACTCGAACCTCGTGAGCAGGGCTAGTTCTACGAAATGTCCTAGTATTTCCGTGCGAGGGGGTGGAGTGAACTTGCCTCCAAACACGTTGGCTCCTTGCACGACACCTTCAGACACTGGCATAGTCTGA 1194 47.74 MFSELMNFLRACFRPRSDRFVHKGSDAGGRQDGLLWYKDIGQHSGGEFSMAVVQANNLLEDQSQIESGSLSVHESGPYGTFVGVYDGHGGPETSRYVNHHLFQHLKRFTSEQQSMSVDVIRKAFQATEEGVIAQVSKQWSMNPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVKVTGEVLSIQLSAEHNAAIESVRQELRALHPDDSKIVVLKHNVWRVKGLIQISRSIGDVYLKKAEFNREPLYAKFRLREPIKRPILSAEPSISTLELQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPHSGSARRLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCPSISVRGGGVNLPPNTLAPCTTPSDTGIV 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49532998 49535796 + evm.model.ptg000010l.933 HCH2g0571 539796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0571 397 CDD PP2Cc 48 355 IPR001932 -
HCH2g0571 397 Gene3D - 38 367 IPR036457 -
HCH2g0571 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
HCH2g0571 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
HCH2g0571 397 SMART PP2C_4 41 353 IPR001932 -
HCH2g0571 397 PANTHER PROTEIN PHOSPHATASE 42 354 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH2g0571 397 FunFam Phosphatase 2C family protein 36 365 - -
HCH2g0571 397 Pfam Protein phosphatase 2C 79 322 IPR001932 -
HCH2g0571 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1328 HCH-Chr13:41196164 HCH2g0571 HCH-Chr2:49532998 6.20E-185 dispersed
HCH1g0512 HCH-Chr1:53977394 HCH2g0571 HCH-Chr2:49532998 4.80E-142 dispersed
HCH2g0571 HCH-Chr2:49532998 HCH7g0452 HCH-Chr7:3352611 1.40E-176 dispersed
HCH11g0562 HCH-Chr11:8501636 HCH2g0571 HCH-Chr2:49532998 3.80E-113 transposed
HCH7g0720 HCH-Chr7:8945553 HCH2g0571 HCH-Chr2:49532998 7.30E-111 transposed
HCH14g0682 HCH-Chr14:35329750 HCH2g0571 HCH-Chr2:49532998 4.80E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0571 - - - 0.0