Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0574 ATGGGAGTGGCAGATATCAACCATGATATCTTTGAAGAAGGAACACTTGAAATTGGCATGGAGTATAGAACCGTCTCTGGCGTTGCTGGTCCTTTGGTTATACTGGATAAAGTTAAGGGGCCTAAGTTTCAGGAGATAGTTAATATTCGTCTTGGAGATGGAACCACTAGACGTGGTCAGGTGCTTGAAGTTGATGGGGAGAAAGCTGTTGTTCAGGTTTTTGAAGGAACGTCTGGAATTGACAACAAATATACCACTGTACAATTTACCGGAGAGGTTCTGAAAACTCCAGTATCACTAGACATGCTTGGTCGTATTTTCAACGGATCTGGAAAACCCATTGATAATGGTCCTCCAATTTTGCCTGAAGCTTACTTGGATATTTCTGGAAGTTCTATCAACCCCAGTGAAAGAACCTATCCTGAAGAGATGATACAAACTGGAATTTCTACTATTGATGTCATGAACTCTATTGCAAGAGGACAAAAGATCCCACTTTTCTCTGCTGCTGGTCTTCCTCATAATGAAATAGCCGCTCAGATATGTCGCCAGGCTGGCTTAGTGAAACGACTGGAGAAAACTGATAATCTTGAGGATAAGGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTAAACATGGAGACGGCACAGTTCTTTAAACGTGATTTTGAGGAAAATGGCTCAATGGAGAGAGTGACATTATTCCTGAACTTGGCAAACGATCCTACAATTGAGCGTATTATTACCCCTCGGATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGGAAGCATGTTCTCGTCATACTCACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTTTCAGCTGCCCGTGAAGAAGTGCCTGGAAGGCGTGGATATCCTGGTTATATGTATACTGATCTGGCCACGATCTATGAGCGAGCTGGACGGATTGAAGGACGAAAAGGATCCATCACTCAAATTCCAATTCTAACTATGCCAAATGATGATATTACACACCCAACTCCTGATCTTACTGGATACATCACTGAAGGACAGATTTATATTGACAGGCAGCTCTACAACAGACAGATTTACCCCCCAATCAACGTTCTTCCTTCCTTGTCACGTCTCATGAAGAGTGCAATTGGTGAGGGAATGACTCGAAGGGATCATGCTGATGTTTCCAACCAGCTTTATGCAAATTATGCCATCGGAAAAGATGTCCAGGCGATGAAGGCTGTGGTTGGGGAAGAAGCGCTTTCTTCGGAGGACTTGCTTTACCTGGAGTTTTTGGACAAGTTCGAGAGGAAGTTCGTTGCTCAAGGCGCCTACGACACCCGTAATATCTTCCAGTCACTTGATTTGGCATGGACGTTGCTACGAATTTTCCCTCGTGAGCTTCTCCACCGAATACCAGCAAAGACCCTCGATCAGTTCTACAGCAGGGATGTGGGTAACTGA 1467 43.76 MGVADINHDIFEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLEDKEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDVGN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49552627 49556771 + evm.model.ptg000010l.930 HCH2g0574 539799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0574 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 17 485 IPR022879 GO:0007035(PANTHER)|GO:0046961(PANTHER)
HCH2g0574 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524(InterPro)
HCH2g0574 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 148 377 IPR000194 GO:0005524(InterPro)
HCH2g0574 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
HCH2g0574 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 383 IPR027417 -
HCH2g0574 488 FunFam V-type proton ATPase subunit B, brain 30 488 - -
HCH2g0574 488 CDD V_A-ATPase_B 93 385 - -
HCH2g0574 488 NCBIfam V-type ATPase subunit B 21 485 IPR005723 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH2g0574 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 91 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
HCH2g0574 488 PIRSF V-ATPsynth_beta/V-ATPase_B 13 488 IPR022879 -
HCH2g0574 488 Hamap V-type ATP synthase beta chain [atpB]. 19 486 IPR022879 -
HCH2g0574 488 CDD ATP-synt_V_A-type_beta_N 21 92 - -
HCH2g0574 488 Pfam C-terminal domain of V and A type ATP synthase 383 482 - -
HCH2g0574 488 Gene3D - 30 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1051 HCH-Chr10:35210655 HCH2g0574 HCH-Chr2:49552627 5.60E-38 dispersed
HCH2g0574 HCH-Chr2:49552627 HCH7g0450 HCH-Chr7:3339765 9.60E-273 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0574 K02147 - gmx:100793764 929.087