Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0582 ATGGATTTCTCACTCAAGTCATTCAAATCCCACTCCTCTTACAAAAATTTAAAGAGTTCTGTCTCTGCAAAAGACGATTTTACTCAAGAACACCTCCCCATTCTTTCCGATCACGATCATCAGCATTCCATGACGACGACGGTGGATTCTAACCGGCAAGAAGTCATCGTCAAGATCGTCCACTCACCGCAGGCCAACTCTTCCAATGACGGTGGGAAGATTTGGCGGGAATCAAGCTATGATTTTTTGAATGACAATGATAATAACACACAAAACCCTAGAGCTAGAGGTTTTAACGCCGATGAGGGTTTTGAGTTTAGGCAAAATAAGAAAAGTGTGGAAAATGACGATGATGTTGATGATCCGCCTTCTAAGCTCATTGGACAGTTTTTGCATAAGCAAAAAGCTTCCGGTGAGATTTCATTAGATATGGATTTGGAAATGCTGGAATTAAATGAGAAGACTTTGCCTCCGGTGGCCGAGTCTCCGATGAGACGGGGATCCAAAGAGCTTAAGGTTTCGTTTGAGTCTATTTCTGAGATTTCCGAGAATGATTCGATGCGAAAACGACGTAAAGACTTGCCGGATGATGAAGACGGTAACCATCGAGCTTCGACGAATGGCGGTGATGAGGTTTTGAGGTGTACTTCTAACTCGTCGTTTCAGAGAAAATCTAGTTTGTTGAGAGCTAAGACTCATAATAAGTCAAGGTTGATGAACCCGCCGGAGCGGAGGTCGGGACGGGTGGCGAAATCGGGACAAATGCGGTCGGGGTTGTTGTTTTCGAGAGGTTTTGATGAGGAAGAAGATGATCCATTTTTGGCGGATGATTTGCCAGATGAGTATAAGAAGGCTAATTTTGGTGTTCTTACTTTGTTGCAATGGGCTAGTTTGTTTTTTATTATTACTGCTTTGGTTTGTAGTCTTTCAATTCCTTTTTGGAGGCATAAGAATCTTTGGAAACTTAAGTTATGGAAATGGGAGGTTATGGTTTTAGTTTTGATTTGTGGTAGGTTGGTTTCTGGTTGGGGTATAAGGATTATTGTTTTCTTTATTGAGAGGAATTTCTTGCTGCGAAAACGGGTTTTATATTTCGTTTACGGGATTCGAAAGGCGGTTCAGAATTGTCTCTGGTTGGGTCTTGTTTTGATTGCTTGGAATTTTCTGTTTGATGAAAAGGTTCAGAGAGAGACCAAGAGCAATGCTCTTGATTATGTGACTAAAGTATTGGTATGCCTTTTGGTGACTACTTTGGTTTGGTTGGTGAAAACGTTGATGGTGAAGGTACTGGCATCTTCGTTCCATGTGAGTACGTATTTTGATCGAATTCAGGATGCGTTGTTTAATCAATATGTAATCGAGACATTATCGGGACCGCCGTTGGTTGAAATTCAGAAGAATGAAGAAGAGGAGATGAAGCTTGCAGAAGAGGTACTAAAATTACAAAATGCAGGGGCCACTATCCCCCCTGATCTCAAGGCAACTGCCTTCTCTACTGCCAAAGGTGGGAGGGTGATTGGGAGTGGAGGACTACAGAAAAGTCCCCGTGGAAGAAGCGCGAAGCTTTCTCGGGCACTTTCCAGGAATCATGATGAAGGTATAACAATCGACCATTTACATAAGCTTAGTCCTAAGAATATCTCTGCTTGGAATATGAAGAGGTTGATGAACATGGTTCGGCATGGAGCTCTTTCAACATTGGATGAACAAATCAAGGATTCCACTCATGATGATGAGTCATCTACACAGATCAAGAGTGAATATGAGGCTAAAGTTGCTGCAAAGAAGATTTTCCAAAACGTGGCCAAGCACGGTTCCAAATATATCTACCTTGAGGACTTGATGCGTTTCATGCAAGAAGACGAAGCTTCAAAAACCATGAGTCTCTTTGAAGGAGCATCTGAGAGCAAGAAAATAAGTAAATCGTCCTTGAAGAACTGGGTGGTCAATGCCTTCAGAGAACGGAGGGCCCTAGCTTTAACACTGAACGACACCAAAACAGCTGTAAACAAACTTCACCGTATAGTGAACTTTTTAGTTGCTATTGTTATTGTGGTTATTTGGCTACTGATTCTGGGGATAGCTACCAGCAAGTTTCTTCTATTTGTAACCTCTCAACTTGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTATTTTTGAAGCAGTCATCTTCTTATTTGTGATACATCCATTTGATGTTGGAGACAGATGCGAAATTGACGGGGTGCAGATGATTGTAGAAGAAATGAATATTTTGACGACTGTTTTTCTAAGGTACGACAACCAGAAGATTATATTTCCAAATAGCGTCCTTGCAACCAAGTCCATCAACAACTTCTACCGTAGTCCTGACATGGGAGATGCTGTTGAATTTTGCCTCCACATATCTACTCCTCTTGAAAAAATTGCTGTCATTAAACAGAGAGTTCTAAGTTACATTGAGGGCAAGAAGGAGCACTGGTGCCCTGCACCCATGATCGTATTAAAGGATGTAGAAGAGTTAAATAGGCTGAGAATAGCAGTATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGGCAAGGAGAGCCCTTTTGGTTGAAGAAATGGTTAAGATTTTCCAAGAGCTTGATCTTCCGTACCGCCTTCTGCCACTGGATATCAATGTCCGATCCTTGCCTCCAGTGAACTCTACCAGTACTAGGCTTCCAGCTACTTGGACAGCCACTGCAAGTTGA 2736 42.14 MDFSLKSFKSHSSYKNLKSSVSAKDDFTQEHLPILSDHDHQHSMTTTVDSNRQEVIVKIVHSPQANSSNDGGKIWRESSYDFLNDNDNNTQNPRARGFNADEGFEFRQNKKSVENDDDVDDPPSKLIGQFLHKQKASGEISLDMDLEMLELNEKTLPPVAESPMRRGSKELKVSFESISEISENDSMRKRRKDLPDDEDGNHRASTNGGDEVLRCTSNSSFQRKSSLLRAKTHNKSRLMNPPERRSGRVAKSGQMRSGLLFSRGFDEEEDDPFLADDLPDEYKKANFGVLTLLQWASLFFIITALVCSLSIPFWRHKNLWKLKLWKWEVMVLVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGIRKAVQNCLWLGLVLIAWNFLFDEKVQRETKSNALDYVTKVLVCLLVTTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLVEIQKNEEEEMKLAEEVLKLQNAGATIPPDLKATAFSTAKGGRVIGSGGLQKSPRGRSAKLSRALSRNHDEGITIDHLHKLSPKNISAWNMKRLMNMVRHGALSTLDEQIKDSTHDDESSTQIKSEYEAKVAAKKIFQNVAKHGSKYIYLEDLMRFMQEDEASKTMSLFEGASESKKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRIVNFLVAIVIVVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTIFEAVIFLFVIHPFDVGDRCEIDGVQMIVEEMNILTTVFLRYDNQKIIFPNSVLATKSINNFYRSPDMGDAVEFCLHISTPLEKIAVIKQRVLSYIEGKKEHWCPAPMIVLKDVEELNRLRIAVWLTHRMNHQDMGERWARRALLVEEMVKIFQELDLPYRLLPLDINVRSLPPVNSTSTRLPATWTATAS 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49639800 49643782 - evm.model.ptg000010l.922 HCH2g0582 539807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0582 911 MobiDBLite consensus disorder prediction 232 253 - -
HCH2g0582 911 Coils Coil 464 484 - -
HCH2g0582 911 FunFam Predicted mechanosensitive ion channel 733 782 - -
HCH2g0582 911 MobiDBLite consensus disorder prediction 1 22 - -
HCH2g0582 911 Gene3D - 733 782 IPR023408 -
HCH2g0582 911 MobiDBLite consensus disorder prediction 176 215 - -
HCH2g0582 911 MobiDBLite consensus disorder prediction 182 205 - -
HCH2g0582 911 Pfam Mechanosensitive ion channel, beta-domain 726 782 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g0582 911 PIRSF Memb_At2g17000 29 911 IPR016688 -
HCH2g0582 911 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 46 908 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
HCH2g0582 911 SUPERFAMILY Sm-like ribonucleoproteins 723 782 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0582 HCH-Chr2:49639800 HCH8g0615 HCH-Chr8:42947174 1.40E-152 dispersed
HCH2g0582 HCH-Chr2:49639800 HCH7g0440 HCH-Chr7:3258243 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0582 K22048 - csv:101210264 1327.0