Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0582 ATGGATTTCTCACTCAAGTCATTCAAATCCCACTCCTCTTACAAAAATTTAAAGAGTTCTGTCTCTGCAAAAGACGATTTTACTCAAGAACACCTCCCCATTCTTTCCGATCACGATCATCAGCATTCCATGACGACGACGGTGGATTCTAACCGGCAAGAAGTCATCGTCAAGATCGTCCACTCACCGCAGGCCAACTCTTCCAATGACGGTGGGAAGATTTGGCGGGAATCAAGCTATGATTTTTTGAATGACAATGATAATAACACACAAAACCCTAGAGCTAGAGGTTTTAACGCCGATGAGGGTTTTGAGTTTAGGCAAAATAAGAAAAGTGTGGAAAATGACGATGATGTTGATGATCCGCCTTCTAAGCTCATTGGACAGTTTTTGCATAAGCAAAAAGCTTCCGGTGAGATTTCATTAGATATGGATTTGGAAATGCTGGAATTAAATGAGAAGACTTTGCCTCCGGTGGCCGAGTCTCCGATGAGACGGGGATCCAAAGAGCTTAAGGTTTCGTTTGAGTCTATTTCTGAGATTTCCGAGAATGATTCGATGCGAAAACGACGTAAAGACTTGCCGGATGATGAAGACGGTAACCATCGAGCTTCGACGAATGGCGGTGATGAGGTTTTGAGGTGTACTTCTAACTCGTCGTTTCAGAGAAAATCTAGTTTGTTGAGAGCTAAGACTCATAATAAGTCAAGGTTGATGAACCCGCCGGAGCGGAGGTCGGGACGGGTGGCGAAATCGGGACAAATGCGGTCGGGGTTGTTGTTTTCGAGAGGTTTTGATGAGGAAGAAGATGATCCATTTTTGGCGGATGATTTGCCAGATGAGTATAAGAAGGCTAATTTTGGTGTTCTTACTTTGTTGCAATGGGCTAGTTTGTTTTTTATTATTACTGCTTTGGTTTGTAGTCTTTCAATTCCTTTTTGGAGGCATAAGAATCTTTGGAAACTTAAGTTATGGAAATGGGAGGTTATGGTTTTAGTTTTGATTTGTGGTAGGTTGGTTTCTGGTTGGGGTATAAGGATTATTGTTTTCTTTATTGAGAGGAATTTCTTGCTGCGAAAACGGGTTTTATATTTCGTTTACGGGATTCGAAAGGCGGTTCAGAATTGTCTCTGGTTGGGTCTTGTTTTGATTGCTTGGAATTTTCTGTTTGATGAAAAGGTTCAGAGAGAGACCAAGAGCAATGCTCTTGATTATGTGACTAAAGTATTGGTATGCCTTTTGGTGACTACTTTGGTTTGGTTGGTGAAAACGTTGATGGTGAAGGTACTGGCATCTTCGTTCCATGTGAGTACGTATTTTGATCGAATTCAGGATGCGTTGTTTAATCAATATGTAATCGAGACATTATCGGGACCGCCGTTGGTTGAAATTCAGAAGAATGAAGAAGAGGAGATGAAGCTTGCAGAAGAGGTACTAAAATTACAAAATGCAGGGGCCACTATCCCCCCTGATCTCAAGGCAACTGCCTTCTCTACTGCCAAAGGTGGGAGGGTGATTGGGAGTGGAGGACTACAGAAAAGTCCCCGTGGAAGAAGCGCGAAGCTTTCTCGGGCACTTTCCAGGAATCATGATGAAGGTATAACAATCGACCATTTACATAAGCTTAGTCCTAAGAATATCTCTGCTTGGAATATGAAGAGGTTGATGAACATGGTTCGGCATGGAGCTCTTTCAACATTGGATGAACAAATCAAGGATTCCACTCATGATGATGAGTCATCTACACAGATCAAGAGTGAATATGAGGCTAAAGTTGCTGCAAAGAAGATTTTCCAAAACGTGGCCAAGCACGGTTCCAAATATATCTACCTTGAGGACTTGATGCGTTTCATGCAAGAAGACGAAGCTTCAAAAACCATGAGTCTCTTTGAAGGAGCATCTGAGAGCAAGAAAATAAGTAAATCGTCCTTGAAGAACTGGGTGGTCAATGCCTTCAGAGAACGGAGGGCCCTAGCTTTAACACTGAACGACACCAAAACAGCTGTAAACAAACTTCACCGTATAGTGAACTTTTTAGTTGCTATTGTTATTGTGGTTATTTGGCTACTGATTCTGGGGATAGCTACCAGCAAGTTTCTTCTATTTGTAACCTCTCAACTTGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTATTTTTGAAGCAGTCATCTTCTTATTTGTGATACATCCATTTGATGTTGGAGACAGATGCGAAATTGACGGGGTGCAGATGATTGTAGAAGAAATGAATATTTTGACGACTGTTTTTCTAAGGTACGACAACCAGAAGATTATATTTCCAAATAGCGTCCTTGCAACCAAGTCCATCAACAACTTCTACCGTAGTCCTGACATGGGAGATGCTGTTGAATTTTGCCTCCACATATCTACTCCTCTTGAAAAAATTGCTGTCATTAAACAGAGAGTTCTAAGTTACATTGAGGGCAAGAAGGAGCACTGGTGCCCTGCACCCATGATCGTATTAAAGGATGTAGAAGAGTTAAATAGGCTGAGAATAGCAGTATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGGCAAGGAGAGCCCTTTTGGTTGAAGAAATGGTTAAGATTTTCCAAGAGCTTGATCTTCCGTACCGCCTTCTGCCACTGGATATCAATGTCCGATCCTTGCCTCCAGTGAACTCTACCAGTACTAGGCTTCCAGCTACTTGGACAGCCACTGCAAGTTGA 2736 42.14 MDFSLKSFKSHSSYKNLKSSVSAKDDFTQEHLPILSDHDHQHSMTTTVDSNRQEVIVKIVHSPQANSSNDGGKIWRESSYDFLNDNDNNTQNPRARGFNADEGFEFRQNKKSVENDDDVDDPPSKLIGQFLHKQKASGEISLDMDLEMLELNEKTLPPVAESPMRRGSKELKVSFESISEISENDSMRKRRKDLPDDEDGNHRASTNGGDEVLRCTSNSSFQRKSSLLRAKTHNKSRLMNPPERRSGRVAKSGQMRSGLLFSRGFDEEEDDPFLADDLPDEYKKANFGVLTLLQWASLFFIITALVCSLSIPFWRHKNLWKLKLWKWEVMVLVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGIRKAVQNCLWLGLVLIAWNFLFDEKVQRETKSNALDYVTKVLVCLLVTTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLVEIQKNEEEEMKLAEEVLKLQNAGATIPPDLKATAFSTAKGGRVIGSGGLQKSPRGRSAKLSRALSRNHDEGITIDHLHKLSPKNISAWNMKRLMNMVRHGALSTLDEQIKDSTHDDESSTQIKSEYEAKVAAKKIFQNVAKHGSKYIYLEDLMRFMQEDEASKTMSLFEGASESKKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRIVNFLVAIVIVVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTIFEAVIFLFVIHPFDVGDRCEIDGVQMIVEEMNILTTVFLRYDNQKIIFPNSVLATKSINNFYRSPDMGDAVEFCLHISTPLEKIAVIKQRVLSYIEGKKEHWCPAPMIVLKDVEELNRLRIAVWLTHRMNHQDMGERWARRALLVEEMVKIFQELDLPYRLLPLDINVRSLPPVNSTSTRLPATWTATAS 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49639800 49643782 - evm.model.ptg000010l.922 HCH2g0582 539807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0582 911 MobiDBLite consensus disorder prediction 232 253 - -
HCH2g0582 911 Coils Coil 464 484 - -
HCH2g0582 911 FunFam Predicted mechanosensitive ion channel 733 782 - -
HCH2g0582 911 MobiDBLite consensus disorder prediction 1 22 - -
HCH2g0582 911 Gene3D - 733 782 IPR023408 -
HCH2g0582 911 MobiDBLite consensus disorder prediction 176 215 - -
HCH2g0582 911 MobiDBLite consensus disorder prediction 182 205 - -
HCH2g0582 911 Pfam Mechanosensitive ion channel, beta-domain 726 782 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g0582 911 PIRSF Memb_At2g17000 29 911 IPR016688 -
HCH2g0582 911 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 46 908 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
HCH2g0582 911 SUPERFAMILY Sm-like ribonucleoproteins 723 782 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0582 K22048 - - csv:101210264 1327.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0582 HCH-Chr2:49639800 HCH8g0615 HCH-Chr8:42947174 1.40E-152 dispersed
HCH2g0582 HCH-Chr2:49639800 HCH7g0440 HCH-Chr7:3258243 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1640 . 69 534 Mechanosensitive Ion Channel Family AT4G00290 60.7 1.8e-154 542.7
HCH11g0771 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 55.7 7.4e-199 690.6
HCH4g0275 . 31 692 Mechanosensitive Ion Channel Family AT5G10490 57.5 3.2e-194 675.2
HCH4g0275 . 8 688 Mechanosensitive Ion Channel Family AT1G58200 57.7 7.7e-204 707.2
HCH11g0771 . 49 696 Mechanosensitive Ion Channel Family AT1G58200 51.6 3.0e-171 599.0
HCH2g0582 . 44 911 Mechanosensitive Ion Channel Family AT1G53470 55.3 3.9e-256 881.3
HCH7g0440 . 73 847 Mechanosensitive Ion Channel Family AT1G53470 55.3 3.3e-239 825.1
HCH2g0582 . 44 906 Mechanosensitive Ion Channel Family AT3G14810 54.9 7.1e-247 850.5
HCH7g0440 . 57 846 Mechanosensitive Ion Channel Family AT3G14810 53.9 5.6e-228 787.7
HCH2g0582 . 50 911 Mechanosensitive Ion Channel Family AT1G78610 58.5 7.1e-279 956.8
HCH7g0440 . 78 847 Mechanosensitive Ion Channel Family AT1G78610 60.1 7.4e-260 893.6
HCH7g0440 . 53 851 Mechanosensitive Ion Channel Family AT2G17000 55.1 7.5e-233 803.9
HCH2g0582 . 209 907 Mechanosensitive Ion Channel Family AT2G17000 60.0 9.2e-231 797.0
HCH2g0582 . 1 648 Mechanosensitive Ion Channel Family AT2G17010 50.1 2.1e-161 566.2
HCH12g0472 . 57 727 Mechanosensitive Ion Channel Family AT5G19520 56.2 8.5e-204 707.2
HCH12g0472 . 48 727 Mechanosensitive Ion Channel Family AT5G12080 60.0 5.8e-221 764.2
HCH8g0615 . 33 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.7e-201 697.2
HCH6g1377 . 102 673 Mechanosensitive Ion Channel Family AT5G12080 50.3 2.8e-151 532.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67