Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0608 ATGGAGAAAGAAGGAGATCATGAGAGTTATGTTGTGATTAAGGAGTTAATGGAAGTGAATCAAGTGATTGAGATTGTTGGGACATTTTCTGGGTTTAGAAAAACACAAGGGAAAGAGTGTTTGAATTTGGTTAGGAGGTTGAAAATGATGGTTCCATTAATGGAGGAGATAAGGGACCTTCATAGATTGGTTCCTACTGAGGTTTTGAGTTGTCATCTTGTTCATTTGAAAGAGGCTCTTCTTTTGGCTGAAAGGTTACTGAAGAATTGTCATAATGGAAGCAAGATTTACTTGGCACTTGAGAATGAGGCTGTTATGGCAAGGTTTCATGCTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATTCCTTATGATGAGCTTGGAATCTCAGTTGAATTGAAAGAGCAAGTTGAACTCATGTGTACACAGCTCAAAAGGGCTAAGTGTAGGAAAGATACACAAGACATGGAATTAGCAATGGATATGATGGTTGTGTTTTCTAAAAATGATGAGAGAAATGCCGACCCTGTTATACTCGAAAGATTGGCAAATAAATTGGAACTACGTAAAATTGCAGATTTGGAAGCAGAAACAGAAGCGGTTCAAAAATTAGTTAAACGTAGAGGTGGGCAGAATTCTGAAAGTCTCCAGCAAATTTTAGACGTTCTGTGCAAGTTTAGACAAATTGCAGGTATGGAAAGTAATATTGCTCCTGATGGTCCTGTTTCATCAAAATGTCTGCGAAGGTGTCAGTCTTCGTTAATTCCTCATGAATTCCTCTGTCCAATTACTCTAGAAATCATGACAGATCCCGTTATTGTCGCAACCGGGCAGACTTATGACCGGGAAAGCATACAGAAGTGGCTGAATTCCAATCACCGGACCTGCCCCAAAACAGGACAAATTTTGGCGCATTTGTCACTGGCACCAAATTATGCCCTCAAGAATCTCATTATGCAGTGGTGTCAAAAGAACAACTATGAACTACCGGAAAAGGATTTATGTGTTGGTGGTGACACTCCTCCTGATCTCGTTGGGGAAATCTCCTCCATTGTCCACAATCTATTATCCAATCAGTTGGATGTCCAGAGAGGAGCCATCATCAGGATCCGGATTCTCTCGAAAGAGAACCCGGAGAACAGAATTTGGATTGCAAATAGTGGAGTCATCCCTCCATTGGTTAAATTGCTCTCCTATCCAGATCCTAAGTTCCAAGAACACACTGTTACTGCTCTATTGAACTTGTCTATAGATGAAGCAAATAAAAGACTCATAGCAAGAGAAGGAGCTATTCCTGCTATTATAGAGATACTGCAGCATGGAACAGATGAAGCTAAAGAGAACTCTGCTGCTGCCTTGTTTAGCTTGTCAATGCTGGATGAGAATAAAGTTATGATTGGATCTCTAAAGGGAATCCCGCCCTTAGTAGCTCTTCTACGAGACGGAACAATCCGAGGAAAAAAGGATGCTGCCACTGCACTTTTTAATTTGTCATTAAATCAATCAAACAAGTCCAGAGCCATCAAAGCTGGTATCATACCGCCACTCCTCTATTTACTCGAGGATAAGAATCTGGGAATGATCGATGAAGCCCTATCGATTTTGTTACTCCTGACATCACATCCCGAAGGCCGAACCGAGATAAGTCACATTTCTTTCATCGAAACCCTGGTCGACATTATAAAGAACGGGACTCCAAAGAACAAGGAATGCGCTACATCAGTACTTCTAGAGCTGGGACTGAACAATTCACCTTCCATTTTGGTTGCACTCCAATATGGGGTGTATGAACATTTGGTAGAGCTCACAAGATGTGGGACAAATAGAGCCCAGAGAAAAGCAAATTCACTTTTGCTCTATATGAGCAAATGTGAACACATTCCCTGA 1890 41.22 MEKEGDHESYVVIKELMEVNQVIEIVGTFSGFRKTQGKECLNLVRRLKMMVPLMEEIRDLHRLVPTEVLSCHLVHLKEALLLAERLLKNCHNGSKIYLALENEAVMARFHAVYDKLKEALDGIPYDELGISVELKEQVELMCTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLEAETEAVQKLVKRRGGQNSESLQQILDVLCKFRQIAGMESNIAPDGPVSSKCLRRCQSSLIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQILAHLSLAPNYALKNLIMQWCQKNNYELPEKDLCVGGDTPPDLVGEISSIVHNLLSNQLDVQRGAIIRIRILSKENPENRIWIANSGVIPPLVKLLSYPDPKFQEHTVTALLNLSIDEANKRLIAREGAIPAIIEILQHGTDEAKENSAAALFSLSMLDENKVMIGSLKGIPPLVALLRDGTIRGKKDAATALFNLSLNQSNKSRAIKAGIIPPLLYLLEDKNLGMIDEALSILLLLTSHPEGRTEISHISFIETLVDIIKNGTPKNKECATSVLLELGLNNSPSILVALQYGVYEHLVELTRCGTNRAQRKANSLLLYMSKCEHIP 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49912466 49915523 + evm.model.ptg000010l.896 HCH2g0608 539833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0608 629 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515(InterPro)
HCH2g0608 629 FunFam RING-type E3 ubiquitin transferase 12 126 - -
HCH2g0608 629 FunFam RING-type E3 ubiquitin transferase 255 330 - -
HCH2g0608 629 SUPERFAMILY ARM repeat 349 623 IPR016024 -
HCH2g0608 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 330 IPR013083 -
HCH2g0608 629 SMART Ubox_2 259 322 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0608 629 Gene3D - 14 124 IPR036537 GO:0007166(InterPro)
HCH2g0608 629 PANTHER U BOX DOMAIN-CONTAINING 35 624 - -
HCH2g0608 629 CDD RING-Ubox_PUB 257 309 IPR045210 -
HCH2g0608 629 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 471 513 IPR000225 GO:0005515(InterPro)
HCH2g0608 629 SUPERFAMILY RING/U-box 256 331 - -
HCH2g0608 629 Gene3D - 490 627 IPR011989 -
HCH2g0608 629 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0608 629 Gene3D - 344 486 IPR011989 -
HCH2g0608 629 FunFam RING-type E3 ubiquitin transferase 343 628 - -
HCH2g0608 629 Pfam U-box domain 256 326 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g0608 629 Pfam Armadillo/beta-catenin-like repeat 378 417 IPR000225 GO:0005515(InterPro)
HCH2g0608 629 Pfam Armadillo/beta-catenin-like repeat 420 458 IPR000225 GO:0005515(InterPro)
HCH2g0608 629 Pfam Armadillo/beta-catenin-like repeat 461 499 IPR000225 GO:0005515(InterPro)
HCH2g0608 629 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 389 431 IPR000225 GO:0005515(InterPro)
HCH2g0608 629 SMART arm_5 378 418 IPR000225 GO:0005515(InterPro)
HCH2g0608 629 SMART arm_5 460 500 IPR000225 GO:0005515(InterPro)
HCH2g0608 629 SMART arm_5 584 624 IPR000225 GO:0005515(InterPro)
HCH2g0608 629 SMART arm_5 419 459 IPR000225 GO:0005515(InterPro)
HCH2g0608 629 SMART arm_5 501 541 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0608 HCH-Chr2:49912466 HCH3g1349 HCH-Chr3:51169913 9.10E-82 dispersed
HCH2g0608 HCH-Chr2:49912466 HCH2g1094 HCH-Chr2:53820840 6.30E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0608 - - - 0.0